1-115263351-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115263351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115263351
    reference: chr 1
allele count: 2
allele frequency: 1.657879903179814e-5
allele num: 120636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1781-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2012-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1781-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1874-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.372-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1874-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1919-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1484-13A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.406-13A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

1-115263356-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115263356
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115263356
    reference: chr 1
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1874-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1781-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1919-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.372-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2012-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1781-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.406-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1484-18T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1874-18T>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/1-115263366-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115263366
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115263366
    reference: chr 1
allele count: 2
allele frequency: 1.663035705376594e-5
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.372-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1781-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2012-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1919-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1484-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1874-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.406-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1874-28G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1781-28G>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13893
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-115263384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115263384
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115263384
    reference: chr 1
allele count: 6
allele frequency: 5.017309718528925e-5
allele num: 119586
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1874-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.372-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2012-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1781-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1919-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1874-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.406-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1781-46G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1484-46G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS

1-115266454-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266454
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+50G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+50G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

1-115266462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266462
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266462
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+42C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

1-115266462-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266462
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266462
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+42C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+42C>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-115266465-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266465
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266465
    reference: chr 1
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+39T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+39T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-115266466-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266466
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266466
    reference: chr 1
allele count: 45
allele frequency: 3.706815598280038e-4
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+38A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+38A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS

1-115266469-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266469
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+35G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+35G>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1891
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-115266487-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266487
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266487
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1780+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1873+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2011+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1873+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1918+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1483+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.405+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.371+17T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1780+17T>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-115266505-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266505
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1779G>T
  hgvsp: ENSP00000342408.6:p.Glu593Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1779G>T
  hgvsp: ENSP00000261443.5:p.Glu593Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1872G>T
  hgvsp: ENSP00000432958.1:p.Glu624Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.370G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.404G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1482G>T
  hgvsp: ENSP00000431297.1:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1917G>T
  hgvsp: ENSP00000358543.1:p.Glu639Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.2010G>T
  hgvsp: ENSP00000407724.2:p.Glu670Asp
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1872G>T
  hgvsp: ENSP00000351329.4:p.Glu624Asp
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu670Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-115266522-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266522
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266522
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1762A>G
  hgvsp: ENSP00000261443.5:p.Ile588Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1762A>G
  hgvsp: ENSP00000342408.6:p.Ile588Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1465A>G
  hgvsp: ENSP00000431297.1:p.Ile489Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1993A>G
  hgvsp: ENSP00000407724.2:p.Ile665Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1855A>G
  hgvsp: ENSP00000432958.1:p.Ile619Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1900A>G
  hgvsp: ENSP00000358543.1:p.Ile634Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.353A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1855A>G
  hgvsp: ENSP00000351329.4:p.Ile619Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.387A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile665Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

1-115266554-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266554
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266554
    reference: chr 1
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1433T>C
  hgvsp: ENSP00000431297.1:p.Val478Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1961T>C
  hgvsp: ENSP00000407724.2:p.Val654Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1823T>C
  hgvsp: ENSP00000432958.1:p.Val608Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1730T>C
  hgvsp: ENSP00000342408.6:p.Val577Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.321T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1730T>C
  hgvsp: ENSP00000261443.5:p.Val577Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.355T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1868T>C
  hgvsp: ENSP00000358543.1:p.Val623Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1823T>C
  hgvsp: ENSP00000351329.4:p.Val608Ala
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val654Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-115266559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266559
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266559
    reference: chr 1
allele count: 35
allele frequency: 2.883934015589723e-4
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1725G>A
  hgvsp: ENST00000261443.5:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1428G>A
  hgvsp: ENST00000530886.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1818G>A
  hgvsp: ENST00000534699.1:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1863G>A
  hgvsp: ENST00000369530.1:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1956G>A
  hgvsp: ENST00000438362.2:c.1956G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1725G>A
  hgvsp: ENST00000339438.6:c.1725G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.316G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.350G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1818G>A
  hgvsp: ENST00000358528.4:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42569
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg652Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-115266563-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266563
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.312T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1952T>C
  hgvsp: ENSP00000407724.2:p.Leu651Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1721T>C
  hgvsp: ENSP00000261443.5:p.Leu574Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1721T>C
  hgvsp: ENSP00000342408.6:p.Leu574Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.346T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1814T>C
  hgvsp: ENSP00000432958.1:p.Leu605Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1424T>C
  hgvsp: ENSP00000431297.1:p.Leu475Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1814T>C
  hgvsp: ENSP00000351329.4:p.Leu605Pro
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1859T>C
  hgvsp: ENSP00000358543.1:p.Leu620Pro
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2576
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu651Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-115266565-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266565
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266565
    reference: chr 1
allele count: 13
allele frequency: 1.071263761619092e-4
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1422C>T
  hgvsp: ENST00000530886.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1950C>T
  hgvsp: ENST00000438362.2:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1812C>T
  hgvsp: ENST00000358528.4:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1857C>T
  hgvsp: ENST00000369530.1:c.1857C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1812C>T
  hgvsp: ENST00000534699.1:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.310C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1719C>T
  hgvsp: ENST00000261443.5:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1719C>T
  hgvsp: ENST00000339438.6:c.1719C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.344C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4988
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro650Pro
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

1-115266568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266568
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266568
    reference: chr 1
allele count: 6
allele frequency: 4.944375772558714e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1716C>T
  hgvsp: ENST00000261443.5:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.307C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1419C>T
  hgvsp: ENST00000530886.1:c.1419C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1854C>T
  hgvsp: ENST00000369530.1:c.1854C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.341C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1947C>T
  hgvsp: ENST00000438362.2:c.1947C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1716C>T
  hgvsp: ENST00000339438.6:c.1716C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1809C>T
  hgvsp: ENST00000358528.4:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1809C>T
  hgvsp: ENST00000534699.1:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42562
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg649Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-115266609-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266609
    reference: chr 1
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1768G>C
  hgvsp: ENSP00000351329.4:p.Glu590Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1675G>C
  hgvsp: ENSP00000261443.5:p.Glu559Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.300G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1906G>C
  hgvsp: ENSP00000407724.2:p.Glu636Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1813G>C
  hgvsp: ENSP00000358543.1:p.Glu605Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1675G>C
  hgvsp: ENSP00000342408.6:p.Glu559Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1768G>C
  hgvsp: ENSP00000432958.1:p.Glu590Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.266G>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1378G>C
  hgvsp: ENSP00000431297.1:p.Glu460Gln
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu636Gln
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-115266611-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266611
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266611
    reference: chr 1
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1673C>G
  hgvsp: ENSP00000342408.6:p.Thr558Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1766C>G
  hgvsp: ENSP00000432958.1:p.Thr589Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1376C>G
  hgvsp: ENSP00000431297.1:p.Thr459Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1766C>G
  hgvsp: ENSP00000351329.4:p.Thr589Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1904C>G
  hgvsp: ENSP00000407724.2:p.Thr635Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1673C>G
  hgvsp: ENSP00000261443.5:p.Thr558Ser
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.264C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.298C>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1811C>G
  hgvsp: ENSP00000358543.1:p.Thr604Ser
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr635Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

1-115266615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266615
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266615
    reference: chr 1
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.294A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1669A>G
  hgvsp: ENSP00000261443.5:p.Ile557Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.260A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1900A>G
  hgvsp: ENSP00000407724.2:p.Ile634Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1807A>G
  hgvsp: ENSP00000358543.1:p.Ile603Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1762A>G
  hgvsp: ENSP00000351329.4:p.Ile588Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1762A>G
  hgvsp: ENSP00000432958.1:p.Ile588Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1669A>G
  hgvsp: ENSP00000342408.6:p.Ile557Val
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1372A>G
  hgvsp: ENSP00000431297.1:p.Ile458Val
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile634Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-115266622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266622
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266622
    reference: chr 1
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1662G>A
  hgvsp: ENST00000339438.6:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1662G>A
  hgvsp: ENST00000261443.5:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1755G>A
  hgvsp: ENST00000534699.1:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1755G>A
  hgvsp: ENST00000358528.4:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1800G>A
  hgvsp: ENST00000369530.1:c.1800G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.287G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1893G>A
  hgvsp: ENST00000438362.2:c.1893G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1365G>A
  hgvsp: ENST00000530886.1:c.1365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.253G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1893G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-115266628-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266628
    reference: chr 1
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-5T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.281T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-5T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1892-5T>C
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-115266639-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266639
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266639
    reference: chr 1
allele count: 21
allele frequency: 1.758558317143431e-4
allele num: 119416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.270T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-16T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-16T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3897
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2149
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-115266642-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266642
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266642
    reference: chr 1
allele count: 1
allele frequency: 8.387854386847844e-6
allele num: 119220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.267A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-19A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-19A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-115266645-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266645
    reference: chr 1
allele count: 49
allele frequency: 4.115917681646367e-4
allele num: 119050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.264T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-22T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-22T>G
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-115266652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266652
    reference: chr 1
allele count: 2
allele frequency: 1.68503353216729e-5
allele num: 118692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.257T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-29T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

1-115266653-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266653
    reference: chr 1
allele count: 8
allele frequency: 6.751510650508052e-5
allele num: 118492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.256T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-30T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-30T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-115266664-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266664
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266664
    reference: chr 1
allele count: 1
allele frequency: 8.484354849657232e-6
allele num: 117864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.245A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-41A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-41A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6094
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

1-115266669-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266669
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266669
    reference: chr 1
allele count: 2
allele frequency: 1.705960626428742e-5
allele num: 117236
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.240T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-46T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-46T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4994
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-115266675-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115266675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115266675
    reference: chr 1
allele count: 3
allele frequency: 2.568053415511043e-5
allele num: 116820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.252-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1799-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1661-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1661-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1754-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1364-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000530784
  gene symbol: CSDE1
  hgvsc: ENST00000530784.1:n.234A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1754-52A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1892-52A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-115267792-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267792
    reference: chr 1
allele count: 2
allele frequency: 1.650709805216243e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+50A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+50A>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31903
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-115267801-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267801
    reference: chr 1
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+41T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+41T>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7971
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4602
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-115267813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267813
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267813
    reference: chr 1
allele count: 8
allele frequency: 6.595979750342167e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+29T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+29T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31910
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-115267827-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267827
    reference: chr 1
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+15C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+15C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-115267831-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267831
    reference: chr 1
allele count: 6
allele frequency: 4.944375772558714e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+11G>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+11G>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31910
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-115267832-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267832
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267832
    reference: chr 1
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+10T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+10T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

1-115267833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267833
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267833
    reference: chr 1
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+9T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-115267836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267836
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267836
    reference: chr 1
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1753+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1891+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1660+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1660+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1798+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1753+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.251+6A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1363+6A>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8602
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1891+6A>C
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-115267847-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267847
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267847
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1358A>T
  hgvsp: ENSP00000431297.1:p.His453Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1655A>T
  hgvsp: ENSP00000261443.5:p.His552Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1748A>T
  hgvsp: ENSP00000432958.1:p.His583Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1655A>T
  hgvsp: ENSP00000342408.6:p.His552Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1748A>T
  hgvsp: ENSP00000351329.4:p.His583Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.246A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1886A>T
  hgvsp: ENSP00000407724.2:p.His629Leu
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1793A>T
  hgvsp: ENSP00000358543.1:p.His598Leu
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4718
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His629Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-115267848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267848
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267848
    reference: chr 1
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1792C>T
  hgvsp: ENSP00000358543.1:p.His598Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1654C>T
  hgvsp: ENSP00000261443.5:p.His552Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1747C>T
  hgvsp: ENSP00000351329.4:p.His583Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1747C>T
  hgvsp: ENSP00000432958.1:p.His583Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1357C>T
  hgvsp: ENSP00000431297.1:p.His453Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1654C>T
  hgvsp: ENSP00000342408.6:p.His552Tyr
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.245C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1885C>T
  hgvsp: ENSP00000407724.2:p.His629Tyr
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3419
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His629Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS

1-115267855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267855
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1785C>T
  hgvsp: ENST00000369530.1:c.1785C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1350C>T
  hgvsp: ENST00000530886.1:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1740C>T
  hgvsp: ENST00000358528.4:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1878C>T
  hgvsp: ENST00000438362.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1647C>T
  hgvsp: ENST00000261443.5:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1740C>T
  hgvsp: ENST00000534699.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1647C>T
  hgvsp: ENST00000339438.6:c.1647C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.238C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn626Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-115267874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267874
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267874
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1628T>C
  hgvsp: ENSP00000261443.5:p.Val543Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1721T>C
  hgvsp: ENSP00000432958.1:p.Val574Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1859T>C
  hgvsp: ENSP00000407724.2:p.Val620Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1721T>C
  hgvsp: ENSP00000351329.4:p.Val574Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1628T>C
  hgvsp: ENSP00000342408.6:p.Val543Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1331T>C
  hgvsp: ENSP00000431297.1:p.Val444Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1766T>C
  hgvsp: ENSP00000358543.1:p.Val589Ala
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.219T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val620Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-115267888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267888
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267888
    reference: chr 1
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1614C>T
  hgvsp: ENST00000339438.6:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1614C>T
  hgvsp: ENST00000261443.5:c.1614C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1707C>T
  hgvsp: ENST00000534699.1:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1317C>T
  hgvsp: ENST00000530886.1:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.205C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1707C>T
  hgvsp: ENST00000358528.4:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1845C>T
  hgvsp: ENST00000438362.2:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1752C>T
  hgvsp: ENST00000369530.1:c.1752C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly615Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD

1-115267891-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267891
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267891
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.202A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1611A>T
  hgvsp: ENSP00000342408.6:p.Lys537Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1749A>T
  hgvsp: ENSP00000358543.1:p.Lys583Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1704A>T
  hgvsp: ENSP00000351329.4:p.Lys568Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1611A>T
  hgvsp: ENSP00000261443.5:p.Lys537Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1704A>T
  hgvsp: ENSP00000432958.1:p.Lys568Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1314A>T
  hgvsp: ENSP00000431297.1:p.Lys438Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1842A>T
  hgvsp: ENSP00000407724.2:p.Lys614Asn
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys614Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-115267893-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267893
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1702A>C
  hgvsp: ENSP00000432958.1:p.Lys568Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1312A>C
  hgvsp: ENSP00000431297.1:p.Lys438Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1840A>C
  hgvsp: ENSP00000407724.2:p.Lys614Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1702A>C
  hgvsp: ENSP00000351329.4:p.Lys568Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1747A>C
  hgvsp: ENSP00000358543.1:p.Lys583Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1609A>C
  hgvsp: ENSP00000342408.6:p.Lys537Gln
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.200A>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1609A>C
  hgvsp: ENSP00000261443.5:p.Lys537Gln
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31905
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys614Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

1-115267900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267900
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267900
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1602C>T
  hgvsp: ENST00000339438.6:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1740C>T
  hgvsp: ENST00000369530.1:c.1740C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.193C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1602C>T
  hgvsp: ENST00000261443.5:c.1602C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1833C>T
  hgvsp: ENST00000438362.2:c.1833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1695C>T
  hgvsp: ENST00000358528.4:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1305C>T
  hgvsp: ENST00000530886.1:c.1305C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1695C>T
  hgvsp: ENST00000534699.1:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser611Ser
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-115267906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267906
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267906
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1827G>A
  hgvsp: ENST00000438362.2:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1596G>A
  hgvsp: ENST00000339438.6:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1689G>A
  hgvsp: ENST00000358528.4:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.187G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1734G>A
  hgvsp: ENST00000369530.1:c.1734G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1596G>A
  hgvsp: ENST00000261443.5:c.1596G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1689G>A
  hgvsp: ENST00000534699.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1299G>A
  hgvsp: ENST00000530886.1:c.1299G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu609Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-115267941-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267941
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267941
    reference: chr 1
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1264G>A
  hgvsp: ENSP00000431297.1:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.152G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1561G>A
  hgvsp: ENSP00000261443.5:p.Asp521Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1654G>A
  hgvsp: ENSP00000351329.4:p.Asp552Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1699G>A
  hgvsp: ENSP00000358543.1:p.Asp567Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1792G>A
  hgvsp: ENSP00000407724.2:p.Asp598Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1654G>A
  hgvsp: ENSP00000432958.1:p.Asp552Asn
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1561G>A
  hgvsp: ENSP00000342408.6:p.Asp521Asn
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp598Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-115267945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267945
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1650T>C
  hgvsp: ENST00000534699.1:c.1650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1695T>C
  hgvsp: ENST00000369530.1:c.1695T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1650T>C
  hgvsp: ENST00000358528.4:c.1650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.148T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1788T>C
  hgvsp: ENST00000438362.2:c.1788T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1260T>C
  hgvsp: ENST00000530886.1:c.1260T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1557T>C
  hgvsp: ENST00000339438.6:c.1557T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1557T>C
  hgvsp: ENST00000261443.5:c.1557T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser596Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/1-115267958-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267958
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267958
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-4T>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-4T>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7359
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31905
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1779-4T>G
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-115267965-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267965
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267965
    reference: chr 1
allele count: 12
allele frequency: 9.887447884910107e-5
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-11T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-11T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8588
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4715
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8570
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-115267967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267967
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267967
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-13C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-13C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

1-115267974-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267974
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267974
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-20G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-20G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-115267979-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267979
    reference: chr 1
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-25T>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-25T>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-115267987-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267987
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267987
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-33T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-33T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4599
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7964
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-115267991-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115267991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267991
    reference: chr 1
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1779-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1548-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1641-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.139-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1641-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1548-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1686-37G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1251-37G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 2323
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genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31899
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

1-115268002-AACAGTAACAGGCAGTCTTTATTTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115267978
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6017
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 1005
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: AACAGTAACAGGCAGTCTTTATTTT
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

1-115268782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268782
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268782
    reference: chr 1
allele count: 1
allele frequency: 8.733929569591951e-6
allele num: 114496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+50T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+50T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17256
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6883
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-115268790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268790
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268790
    reference: chr 1
allele count: 2
allele frequency: 1.745352997643774e-5
allele num: 114590
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+42C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+42C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3947
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4097
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6877
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-115268792-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268792
    reference: chr 1
allele count: 1
allele frequency: 8.72539438782633e-6
allele num: 114608
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+40A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+40A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6877
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-115268799-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268799
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268799
    reference: chr 1
allele count: 1
allele frequency: 8.701402666109778e-6
allele num: 114924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+33A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+33A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24598
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-115268800-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268800
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268800
    reference: chr 1
allele count: 3
allele frequency: 2.609557940884814e-5
allele num: 114962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+32A>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+32A>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18061
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-115268801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268801
    reference: chr 1
allele count: 1
allele frequency: 8.697618592029503e-6
allele num: 114974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+31T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+31T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-115268805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268805
    reference: chr 1
allele count: 1
allele frequency: 8.681610612400813e-6
allele num: 115186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+27C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+27C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-115268807-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268807
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 115360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+25T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+25T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4111
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25351
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

1-115268815-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268815
    reference: chr 1
allele count: 4
allele frequency: 3.451251078515962e-5
allele num: 115900
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+17A>G
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+17A>G
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18699
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6865
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-115268823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268823
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268823
    reference: chr 1
allele count: 1
allele frequency: 8.560764305037153e-6
allele num: 116812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+9T>C
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+9T>C
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-115268824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268824
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268824
    reference: chr 1
allele count: 2
allele frequency: 1.712094233666621e-5
allele num: 116816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+8G>A
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+8G>A
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27578
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1778+8G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-115268825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115268825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 115268825
    reference: chr 1
allele count: 3
allele frequency: 2.560557177241768e-5
allele num: 117162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000358543
  ensembl transcript: ENST00000369530
  gene symbol: CSDE1
  hgvsc: ENST00000369530.1:c.1685+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000351329
  ensembl transcript: ENST00000358528
  gene symbol: CSDE1
  hgvsc: ENST00000358528.4:c.1640+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000407724
  ensembl transcript: ENST00000438362
  gene symbol: CSDE1
  hgvsc: ENST00000438362.2:c.1778+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000432958
  ensembl transcript: ENST00000534699
  gene symbol: CSDE1
  hgvsc: ENST00000534699.1:c.1640+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000431297
  ensembl transcript: ENST00000530886
  gene symbol: CSDE1
  hgvsc: ENST00000530886.1:c.1250+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000261443
  ensembl transcript: ENST00000261443
  gene symbol: CSDE1
  hgvsc: ENST00000261443.5:c.1547+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl transcript: ENST00000483030
  gene symbol: CSDE1
  hgvsc: ENST00000483030.1:n.138+7C>T
  variant of: http://identifiers.org/hgnc/29905
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000009307
  ensembl protein: ENSP00000342408
  ensembl transcript: ENST00000339438
  gene symbol: CSDE1
  hgvsc: ENST00000339438.6:c.1547+7C>T
  variant of: http://identifiers.org/hgnc/29905
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1778+7C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

GenotypeQuality
all individuals: 19062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5079
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -9.5e-2

InbreedingCoeff
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SIO_000300: 1.51e-2

VQSLOD
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ClippingRankSum
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DP
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
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SIO_000300: 2.24e0

BaseQRankSum
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SIO_000300: 5.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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SIO_000300: 1.42e-2

ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

Latino
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allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10388
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

DP
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

FS
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.535e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15484
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.561093636583596e-5
allele num: 66128
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
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African
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

DP
type: SiteQuality
SIO_000300: 2.053625e6

QD
type: SiteQuality
SIO_000300: 1.419e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.68e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.758e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.449962e6

MQRankSum
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SIO_000300: 3.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

QD
type: SiteQuality
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -5.608e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.611687812379854e-5
allele num: 10404
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 16508
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
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MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ClippingRankSum
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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QD
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele num: 10404
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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DP
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Finnish)
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South Asian
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Latino
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

African
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European (Finnish)
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Latino
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allele num: 11576
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Other
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East Asian
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South Asian
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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allele num: 16508
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African
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MQ
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MQRankSum
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QD
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FS
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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South Asian
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Latino
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MQRankSum
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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Other
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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InbreedingCoeff
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MQRankSum
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FS
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QD
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

East Asian
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African
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allele num: 10402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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MQ
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FS
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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Latino
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allele num: 11576
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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Other
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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Other
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East Asian
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European (Finnish)
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.495352881213648e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
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SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.985e0

MQ
type: SiteQuality
SIO_000300: 5.991e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 3.431588e6

QD
type: SiteQuality
SIO_000300: 1.001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.927e1

FS
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 3.430515e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: 1.41e-1

QD
type: SiteQuality
SIO_000300: 1.587e1

MQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.215e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

FS
type: SiteQuality
SIO_000300: 4.199e0

DP
type: SiteQuality
SIO_000300: 3.426485e6

VQSLOD
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.523e0

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.280618012812461e-5
allele num: 15922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.417095e6

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

FS
type: SiteQuality
SIO_000300: 3.008e0

QD
type: SiteQuality
SIO_000300: 1.05e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.67e-2

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.408281e6

GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.3801261829653e-3
allele num: 15216
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.45e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
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VQSLOD
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SIO_000300: 9.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.513271390091099e-5
allele num: 66082
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Other
type: Population
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.543114153314959e-5
allele num: 66034
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European (Finnish)
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Latino
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allele frequency: 4.327505625757314e-4
allele num: 11554
num of homozygotes: 0

African
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allele frequency: 3.95600154380548e-3
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

DP
type: SiteQuality
SIO_000300: 3.370071e6

FS
type: SiteQuality
SIO_000300: 6.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033060357901122e-5
allele num: 65940
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.114e0

MQ
type: SiteQuality
SIO_000300: 3.655e1

VQSLOD
type: SiteQuality
SIO_000300: -3.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

FS
type: SiteQuality
SIO_000300: 2.473e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 3.357808e6

GenotypeQuality
all individuals: 2484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.48621588259498e-4
allele num: 14582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

DP
type: SiteQuality
SIO_000300: 3.354815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 1.0711e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -9.045e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 2290
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.326e0

DP
type: SiteQuality
SIO_000300: 3.345958e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.509e1

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
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variant carriers: 0

GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 1537
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13658
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.909e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 1.724e1

MQRankSum
type: SiteQuality
SIO_000300: 8.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

DP
type: SiteQuality
SIO_000300: 3.340948e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

GenotypeQuality
all individuals: 353
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 838
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variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 1384
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variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42490
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.478312892611427e-5
allele num: 13372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52699731248473e-5
allele num: 65488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.749e1

FS
type: SiteQuality
SIO_000300: 2.035e0

DP
type: SiteQuality
SIO_000300: 3.33814e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 601
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 2313
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GenotypeQuality
all individuals: 2020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21654501216545e-4
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.87852e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.636e-1

GenotypeQuality
all individuals: 31910
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2031
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variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 7495
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3828
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214034235765449e-4
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.495e1

VQSLOD
type: SiteQuality
SIO_000300: 4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.887774e6

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 46
bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 3747
bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 3854
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 8
allele frequency: 6.912044237083118e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.34e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 2.896974e6

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

FS
type: SiteQuality
SIO_000300: 1.377e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3743
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.108e0

DP
type: SiteQuality
SIO_000300: 2.900715e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.717e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.118e0

QD
type: SiteQuality
SIO_000300: 1.33e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.369e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.635041802980734e-4
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 7.576e0

DP
type: SiteQuality
SIO_000300: 2.901617e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

FS
type: SiteQuality
SIO_000300: 1.887e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 2.901571e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 1.226e1

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 1.038e0

DP
type: SiteQuality
SIO_000300: 2.901512e6

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.54e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.27e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.432e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 2.901623e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e0

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 2.901465e6

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49599856128046e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.678e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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MQRankSum
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SIO_000300: 1.4e-2

VQSLOD
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MQ
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SIO_000300: 5.96e1

ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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South Asian
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
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DP
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MQ
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Other
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allele count: 0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
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FS
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

African
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Other
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Latino
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East Asian
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South Asian
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European (Finnish)
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MQRankSum
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FS
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ClippingRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66730
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South Asian
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Latino
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European (Finnish)
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African
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East Asian
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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European (Finnish)
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QD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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East Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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QD
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.135e0

InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 1.499250374812594e-5
allele num: 66700
num of homozygotes: 0

InbreedingCoeff
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MQ
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QD
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.42e-1

ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -4.0e-4

ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 4.23e0

FS
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VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

DP
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SIO_000300: 2.895489e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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VQSLOD
type: SiteQuality
SIO_000300: -8.753e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
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SIO_000300: 1.7e-2

ReadPosRankSum
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SIO_000300: -3.17e-1

FS
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BaseQRankSum
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DP
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MQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
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East Asian
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allele frequency: 1.156871818602499e-4
allele num: 8644
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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South Asian
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Other
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European (Finnish)
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BaseQRankSum
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QD
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DP
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MQ
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 64734
num of homozygotes: 0

East Asian
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Latino
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African
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European (Finnish)
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Other
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South Asian
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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Other
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African
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East Asian
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European (Non-Finnish)
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South Asian
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QD
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.542257865515114e-5
allele num: 64840
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.107e0

VQSLOD
type: SiteQuality
SIO_000300: -1.876e0

DP
type: SiteQuality
SIO_000300: 1.735097e6

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

QD
type: SiteQuality
SIO_000300: 2.286e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541782300339192e-5
allele num: 64860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.747030048916841e-4
allele num: 11448
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 4.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

DP
type: SiteQuality
SIO_000300: 1.736745e6

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5416872224963e-5
allele num: 64864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.755e0

FS
type: SiteQuality
SIO_000300: 6.107e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 2.166e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.73868e6

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.744689144416293e-5
allele num: 10262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

QD
type: SiteQuality
SIO_000300: 1.141e1

DP
type: SiteQuality
SIO_000300: 1.746939e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8310
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variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0675e1

QD
type: SiteQuality
SIO_000300: 1.401e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

VQSLOD
type: SiteQuality
SIO_000300: -9.595e-1

DP
type: SiteQuality
SIO_000300: 1.74963e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.641448131817127e-4
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

FS
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.222e1

DP
type: SiteQuality
SIO_000300: 1.762973e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529379377848469e-5
allele num: 65386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.51e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 4.027e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

DP
type: SiteQuality
SIO_000300: 1.776064e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529239050648397e-5
allele num: 65392
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13528
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
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African
type: Population
allele count: 1
allele frequency: 9.704968944099378e-5
allele num: 10304
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.298e1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-2

DP
type: SiteQuality
SIO_000300: 1.778543e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
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South Asian
type: Population
allele count: 1
allele frequency: 7.268498328245384e-5
allele num: 13758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.053901358986105e-5
allele num: 65490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.781978e6

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
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