1-29637339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637339
    reference: chr 1
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2857+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2857+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2875+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2875+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1229+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2875+47C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2887+47C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53560
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-29637339-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637339
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637339
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2857+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2875+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2887+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2875+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2857+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1229+47C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2875+47C>G
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53560
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 750
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-29637340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637340
    reference: chr 1
allele count: 16
allele frequency: 1.317935454111135e-4
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2887+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2875+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2875+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2857+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1229+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2857+48G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2875+48G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4876
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1729
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 627
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 63
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-29637342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637342
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637342
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2887+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2857+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2875+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2875+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2875+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2857+50G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1229+50G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53562
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-29637929-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637929
    reference: chr 1
allele count: 1
allele frequency: 8.386306838194597e-6
allele num: 119242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.72C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-39C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-39C>G
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

1-29637929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637929
    reference: chr 1
allele count: 1
allele frequency: 8.386306838194597e-6
allele num: 119242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.72C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-39C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-39C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

1-29637933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637933
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637933
    reference: chr 1
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.76T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-35T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-35T>C
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4717
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/1-29637947-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637947
    reference: chr 1
allele count: 1
allele frequency: 8.319467554076538e-6
allele num: 120200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.90A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-21A>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-21A>C
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8410
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-29637950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637950
    reference: chr 1
allele count: 3
allele frequency: 2.493185293531015e-5
allele num: 120328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.93C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-18C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-18C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25216
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-29637955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637955
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637955
    reference: chr 1
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-13C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.98C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-13C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-29637956-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637956
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637956
    reference: chr 1
allele count: 2
allele frequency: 1.657797450307521e-5
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2876-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2858-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2888-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.99C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2858-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2876-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1230-12C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2876-12C>A
  variant of: http://identifiers.org/hgnc/9683
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

1-29637971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637971
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637971
    reference: chr 1
allele count: 6
allele frequency: 4.954419342053112e-5
allele num: 121104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2891C>T
  hgvsp: ENSP00000334941.5:p.Pro964Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2879C>T
  hgvsp: ENSP00000349333.3:p.Pro960Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2861C>T
  hgvsp: ENSP00000392332.2:p.Pro954Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2861C>T
  hgvsp: ENSP00000362884.3:p.Pro954Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2879C>T
  hgvsp: ENSP00000314987.8:p.Pro960Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1233C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2879C>T
  hgvsp: ENSP00000432906.1:p.Pro960Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.114C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro964Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-29637983-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637983
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637983
    reference: chr 1
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2873T>C
  hgvsp: ENSP00000362884.3:p.Met958Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2903T>C
  hgvsp: ENSP00000334941.5:p.Met968Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2891T>C
  hgvsp: ENSP00000349333.3:p.Met964Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2873T>C
  hgvsp: ENSP00000392332.2:p.Met958Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2891T>C
  hgvsp: ENSP00000432906.1:p.Met964Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2891T>C
  hgvsp: ENSP00000314987.8:p.Met964Thr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.126T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1245T>C
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met968Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-29637984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637984
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637984
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1246G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2874G>A
  hgvsp: ENSP00000362884.3:p.Met958Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2892G>A
  hgvsp: ENSP00000314987.8:p.Met964Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2904G>A
  hgvsp: ENSP00000334941.5:p.Met968Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2892G>A
  hgvsp: ENSP00000349333.3:p.Met964Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2892G>A
  hgvsp: ENSP00000432906.1:p.Met964Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.127G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2874G>A
  hgvsp: ENSP00000392332.2:p.Met958Ile
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met968Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-29637989-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637989
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637989
    reference: chr 1
allele count: 6
allele frequency: 4.946740098275237e-5
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2897A>G
  hgvsp: ENSP00000349333.3:p.Tyr966Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2879A>G
  hgvsp: ENSP00000362884.3:p.Tyr960Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1251A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2909A>G
  hgvsp: ENSP00000334941.5:p.Tyr970Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2897A>G
  hgvsp: ENSP00000314987.8:p.Tyr966Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.132A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2897A>G
  hgvsp: ENSP00000432906.1:p.Tyr966Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2879A>G
  hgvsp: ENSP00000392332.2:p.Tyr960Cys
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5679
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Tyr970Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-29637991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29637991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29637991
    reference: chr 1
allele count: 27
allele frequency: 2.225886232481451e-4
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2899G>A
  hgvsp: ENSP00000314987.8:p.Asp967Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2911G>A
  hgvsp: ENSP00000334941.5:p.Asp971Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1253G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2899G>A
  hgvsp: ENSP00000432906.1:p.Asp967Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2881G>A
  hgvsp: ENSP00000392332.2:p.Asp961Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2881G>A
  hgvsp: ENSP00000362884.3:p.Asp961Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2899G>A
  hgvsp: ENSP00000349333.3:p.Asp967Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.134G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp971Asn
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-29638000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638000
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638000
    reference: chr 1
allele count: 3
allele frequency: 2.472839974282464e-5
allele num: 121318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2908C>T
  hgvsp: ENSP00000432906.1:p.Arg970Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2920C>T
  hgvsp: ENSP00000334941.5:p.Arg974Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2890C>T
  hgvsp: ENSP00000392332.2:p.Arg964Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1262C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2908C>T
  hgvsp: ENSP00000314987.8:p.Arg970Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2908C>T
  hgvsp: ENSP00000349333.3:p.Arg970Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.143C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2890C>T
  hgvsp: ENSP00000362884.3:p.Arg964Cys
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5687
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg974Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-29638001-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638001
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638001
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2909G>A
  hgvsp: ENSP00000349333.3:p.Arg970His
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2909G>A
  hgvsp: ENSP00000432906.1:p.Arg970His
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.144G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2909G>A
  hgvsp: ENSP00000314987.8:p.Arg970His
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1263G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2921G>A
  hgvsp: ENSP00000334941.5:p.Arg974His
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2891G>A
  hgvsp: ENSP00000362884.3:p.Arg964His
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2891G>A
  hgvsp: ENSP00000392332.2:p.Arg964His
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg974His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-29638002-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638002
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638002
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2910T>A
  hgvsp: ENST00000323874.8:c.2910T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1264T>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2922T>A
  hgvsp: ENST00000345512.3:c.2922T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.145T>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2910T>A
  hgvsp: ENST00000356870.3:c.2910T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2892T>A
  hgvsp: ENST00000373779.3:c.2892T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2910T>A
  hgvsp: ENST00000460170.2:c.2910T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2892T>A
  hgvsp: ENST00000428026.2:c.2892T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg974Arg
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-29638008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638008
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638008
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2916G>A
  hgvsp: ENST00000356870.3:c.2916G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2916G>A
  hgvsp: ENST00000460170.2:c.2916G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2898G>A
  hgvsp: ENST00000373779.3:c.2898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2916G>A
  hgvsp: ENST00000323874.8:c.2916G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2898G>A
  hgvsp: ENST00000428026.2:c.2898G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.151G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2928G>A
  hgvsp: ENST00000345512.3:c.2928G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1270G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10141
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24224
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8856
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5673
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val976Val
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

1-29638016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638016
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638016
    reference: chr 1
allele count: 248
allele frequency: 2.16446438234216e-3
allele num: 114578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2906A>G
  hgvsp: ENSP00000392332.2:p.Glu969Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2936A>G
  hgvsp: ENSP00000334941.5:p.Glu979Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2924A>G
  hgvsp: ENSP00000432906.1:p.Glu975Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1278A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2924A>G
  hgvsp: ENSP00000314987.8:p.Glu975Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2924A>G
  hgvsp: ENSP00000349333.3:p.Glu975Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2906A>G
  hgvsp: ENSP00000362884.3:p.Glu969Gly
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.159A>G
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9800
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 16647
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 23009
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 9.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 8331
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 9
hgvs: p.Glu979Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

1-29638018-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638018
    reference: chr 1
allele count: 8
allele frequency: 6.598046978094485e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2908C>G
  hgvsp: ENSP00000362884.3:p.His970Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1280C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2926C>G
  hgvsp: ENSP00000314987.8:p.His976Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2926C>G
  hgvsp: ENSP00000349333.3:p.His976Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2926C>G
  hgvsp: ENSP00000432906.1:p.His976Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2938C>G
  hgvsp: ENSP00000334941.5:p.His980Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2908C>G
  hgvsp: ENSP00000392332.2:p.His970Asp
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.161C>G
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4250
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His980Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/1-29638025-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
allele count: 2
allele frequency: 1.648288252649623e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2915C>A
  hgvsp: ENSP00000392332.2:p.Ser972Tyr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2933C>A
  hgvsp: ENSP00000314987.8:p.Ser978Tyr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1287C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2915C>A
  hgvsp: ENSP00000362884.3:p.Ser972Tyr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2945C>A
  hgvsp: ENSP00000334941.5:p.Ser982Tyr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2933C>A
  hgvsp: ENSP00000349333.3:p.Ser978Tyr
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.168C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2933C>A
  hgvsp: ENSP00000432906.1:p.Ser978Tyr
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser982Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-29638025-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
allele count: 10
allele frequency: 8.241441263248116e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2933C>G
  hgvsp: ENSP00000314987.8:p.Ser978Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.168C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2933C>G
  hgvsp: ENSP00000432906.1:p.Ser978Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2933C>G
  hgvsp: ENSP00000349333.3:p.Ser978Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1287C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2915C>G
  hgvsp: ENSP00000362884.3:p.Ser972Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2945C>G
  hgvsp: ENSP00000334941.5:p.Ser982Cys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2915C>G
  hgvsp: ENSP00000392332.2:p.Ser972Cys
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 9.75e1
  variant carriers: 10
hgvs: p.Ser982Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-29638025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638025
    reference: chr 1
allele count: 3
allele frequency: 2.472432378974435e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2933C>T
  hgvsp: ENSP00000432906.1:p.Ser978Phe
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1287C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2915C>T
  hgvsp: ENSP00000392332.2:p.Ser972Phe
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.168C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2915C>T
  hgvsp: ENSP00000362884.3:p.Ser972Phe
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2945C>T
  hgvsp: ENSP00000334941.5:p.Ser982Phe
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2933C>T
  hgvsp: ENSP00000349333.3:p.Ser978Phe
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2933C>T
  hgvsp: ENSP00000314987.8:p.Ser978Phe
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser982Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

1-29638026-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638026
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2934C>T
  hgvsp: ENST00000460170.2:c.2934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2916C>T
  hgvsp: ENST00000428026.2:c.2916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2934C>T
  hgvsp: ENST00000323874.8:c.2934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1288C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2934C>T
  hgvsp: ENST00000356870.3:c.2934C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2916C>T
  hgvsp: ENST00000373779.3:c.2916C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2946C>T
  hgvsp: ENST00000345512.3:c.2946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.169C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser982Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

1-29638032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638032
    reference: chr 1
allele count: 11
allele frequency: 9.063941990771259e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1294C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2952C>T
  hgvsp: ENST00000345512.3:c.2952C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2940C>T
  hgvsp: ENST00000323874.8:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2922C>T
  hgvsp: ENST00000428026.2:c.2922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2940C>T
  hgvsp: ENST00000356870.3:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2922C>T
  hgvsp: ENST00000373779.3:c.2922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2940C>T
  hgvsp: ENST00000460170.2:c.2940C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.175C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24823
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8299
  bin: 9.75e1
  variant carriers: 11
hgvs: p.Ile984Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

1-29638033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638033
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638033
    reference: chr 1
allele count: 13
allele frequency: 1.071140187531928e-4
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2923G>A
  hgvsp: ENSP00000392332.2:p.Val975Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.176G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2941G>A
  hgvsp: ENSP00000349333.3:p.Val981Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2923G>A
  hgvsp: ENSP00000362884.3:p.Val975Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2941G>A
  hgvsp: ENSP00000432906.1:p.Val981Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2953G>A
  hgvsp: ENSP00000334941.5:p.Val985Ile
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1295G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2941G>A
  hgvsp: ENSP00000314987.8:p.Val981Ile
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24840
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val985Ile
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

1-29638036-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638036
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638036
    reference: chr 1
allele count: 17
allele frequency: 1.400791034937377e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2944A>T
  hgvsp: ENSP00000314987.8:p.Met982Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.179A>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2926A>T
  hgvsp: ENSP00000362884.3:p.Met976Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1298A>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2956A>T
  hgvsp: ENSP00000334941.5:p.Met986Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2944A>T
  hgvsp: ENSP00000349333.3:p.Met982Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2944A>T
  hgvsp: ENSP00000432906.1:p.Met982Leu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2926A>T
  hgvsp: ENSP00000392332.2:p.Met976Leu
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10119
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8317
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met986Leu
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

1-29638037-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638037
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638037
    reference: chr 1
allele count: 17
allele frequency: 1.400791034937377e-4
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2945T>G
  hgvsp: ENSP00000432906.1:p.Met982Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2945T>G
  hgvsp: ENSP00000349333.3:p.Met982Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2927T>G
  hgvsp: ENSP00000362884.3:p.Met976Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1299T>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.180T>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2945T>G
  hgvsp: ENSP00000314987.8:p.Met982Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2927T>G
  hgvsp: ENSP00000392332.2:p.Met976Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2957T>G
  hgvsp: ENSP00000334941.5:p.Met986Arg
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10117
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met986Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-29638048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638048
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2938C>T
  hgvsp: ENST00000428026.2:c.2938C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2956C>T
  hgvsp: ENST00000356870.3:c.2956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2968C>T
  hgvsp: ENST00000345512.3:c.2968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2938C>T
  hgvsp: ENST00000373779.3:c.2938C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2956C>T
  hgvsp: ENST00000460170.2:c.2956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1310C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.191C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2956C>T
  hgvsp: ENST00000323874.8:c.2956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4199
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu990Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-29638053-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638053
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638053
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.196C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2973C>G
  hgvsp: ENST00000345512.3:c.2973C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2961C>G
  hgvsp: ENST00000356870.3:c.2961C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2943C>G
  hgvsp: ENST00000428026.2:c.2943C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2961C>G
  hgvsp: ENST00000460170.2:c.2961C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2943C>G
  hgvsp: ENST00000373779.3:c.2943C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1315C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2961C>G
  hgvsp: ENST00000323874.8:c.2961C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val991Val
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

1-29638053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638053
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638053
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2943C>T
  hgvsp: ENST00000373779.3:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2961C>T
  hgvsp: ENST00000356870.3:c.2961C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2961C>T
  hgvsp: ENST00000323874.8:c.2961C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2961C>T
  hgvsp: ENST00000460170.2:c.2961C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1315C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2943C>T
  hgvsp: ENST00000428026.2:c.2943C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.196C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2973C>T
  hgvsp: ENST00000345512.3:c.2973C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8322
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8757
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val991Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

1-29638054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638054
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638054
    reference: chr 1
allele count: 2
allele frequency: 1.648043772042586e-5
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2962G>A
  hgvsp: ENSP00000432906.1:p.Glu988Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2944G>A
  hgvsp: ENSP00000392332.2:p.Glu982Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.197G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2944G>A
  hgvsp: ENSP00000362884.3:p.Glu982Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1316G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2974G>A
  hgvsp: ENSP00000334941.5:p.Glu992Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2962G>A
  hgvsp: ENSP00000349333.3:p.Glu988Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2962G>A
  hgvsp: ENSP00000314987.8:p.Glu988Lys
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu992Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-29638067-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638067
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638067
    reference: chr 1
allele count: 5
allele frequency: 4.120313143798929e-5
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+2T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+11T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+11T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+11T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+2T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+2T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+2T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+2T>C
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8340
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2985+2T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-29638071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638071
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638071
    reference: chr 1
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+15C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+15C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+15C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+6C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8350
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2985+6C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

1-29638072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638072
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638072
    reference: chr 1
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+16C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+16C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+16C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+7C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2985+7C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

1-29638073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638073
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638073
    reference: chr 1
allele count: 11
allele frequency: 9.064539521392314e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+17G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+17G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+17G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2985+8G>A
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ

1-29638075-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638075
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638075
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+19G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+10G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+19G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+10G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+10G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+10G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+19G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+10G>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-29638078-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638078
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638078
    reference: chr 1
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+22G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+13G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+22G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+13G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+13G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+22G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+13G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+13G>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5624
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS

1-29638084-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638084
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638084
    reference: chr 1
allele count: 10
allele frequency: 8.242120532770672e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+28C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+28C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+28C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+19C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24396
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-29638085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638085
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638085
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+20G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+20G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+29G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+20G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+29G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+20G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+29G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+20G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

1-29638089-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638089
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638090
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+37dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+37dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+28dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+28dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+28dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+28dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+37dupG
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+28dupG
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8382
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

1-29638094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638094
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638094
    reference: chr 1
allele count: 10
allele frequency: 8.241577108195424e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+38C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+29C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+29C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+38C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+29C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+38C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+29C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+29C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16956
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8393
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-29638095-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638095
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+30G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+39G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+30G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+30G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+30G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+39G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+30G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+39G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-29638105-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638105
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638105
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+40C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1318+49C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+40C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2946+49C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+40C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+40C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+40C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.199+49C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8699
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

1-29638108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638108
    reference: chr 1
allele count: 7
allele frequency: 5.769199070334778e-5
allele num: 121334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+43A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-47A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+43A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-47A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+43A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+43A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+43A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-47A>G
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16978
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5613
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8408
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

1-29638110-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638110
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638110
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2973+45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2973+45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2985+45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2955+45G>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2973+45G>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-29638113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638113
    reference: chr 1
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-42G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-42G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5617
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-29638124-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638124
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638124
    reference: chr 1
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-31C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-31C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-29638133-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638133
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638132
    reference: chr 1
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-19delC
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-19delC
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5595
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: TC
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-29638136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638136
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638136
    reference: chr 1
allele count: 36
allele frequency: 2.967701515176496e-4
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-19C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-19C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22056
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5588
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-29638137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638137
    reference: chr 1
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-18G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-18G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16985
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-29638142-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638142
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638142
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-13G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-13G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-29638147-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638147
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638147
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-8G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-8G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2986-8G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

1-29638148-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638148
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638148
    reference: chr 1
allele count: 37
allele frequency: 3.049986810867845e-4
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-7C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-7C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2986-7C>T
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-29638149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638149
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638149
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-6C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-6C>T
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24263
  bin: 6.25e1
  variant carriers: 0
hgvs: c.2986-6C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-29638151-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638151
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638151
    reference: chr 1
allele count: 9
allele frequency: 7.418030760100886e-5
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2974-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.200-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2986-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2947-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1319-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2974-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2974-4C>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2956-4C>G
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2986-4C>G
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-29638158-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638158
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2977A>G
  hgvsp: ENSP00000432906.1:p.Lys993Glu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2977A>G
  hgvsp: ENSP00000349333.3:p.Lys993Glu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1322A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2950A>G
  hgvsp: ENSP00000392332.2:p.Lys984Glu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2977A>G
  hgvsp: ENSP00000314987.8:p.Lys993Glu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2959A>G
  hgvsp: ENSP00000362884.3:p.Lys987Glu
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.203A>G
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2989A>G
  hgvsp: ENSP00000334941.5:p.Lys997Glu
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys997Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

1-29638161-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638161
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638161
    reference: chr 1
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.206T>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1325T>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2962T>A
  hgvsp: ENSP00000362884.3:p.Cys988Ser
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2980T>A
  hgvsp: ENSP00000314987.8:p.Cys994Ser
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2992T>A
  hgvsp: ENSP00000334941.5:p.Cys998Ser
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2980T>A
  hgvsp: ENSP00000432906.1:p.Cys994Ser
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2980T>A
  hgvsp: ENSP00000349333.3:p.Cys994Ser
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2953T>A
  hgvsp: ENSP00000392332.2:p.Cys985Ser
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17075
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4168
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys998Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-29638168-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638168
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638168
    reference: chr 1
allele count: 2
allele frequency: 1.648342591524222e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2969G>A
  hgvsp: ENSP00000362884.3:p.Arg990Gln
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.2999G>A
  hgvsp: ENSP00000334941.5:p.Arg1000Gln
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2987G>A
  hgvsp: ENSP00000432906.1:p.Arg996Gln
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2987G>A
  hgvsp: ENSP00000314987.8:p.Arg996Gln
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2987G>A
  hgvsp: ENSP00000349333.3:p.Arg996Gln
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.213G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1332G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2960G>A
  hgvsp: ENSP00000392332.2:p.Arg987Gln
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4157
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg1000Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

1-29638178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638178
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638178
    reference: chr 1
allele count: 2
allele frequency: 1.648152421135907e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2970G>A
  hgvsp: ENST00000428026.2:c.2970G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2997G>A
  hgvsp: ENST00000323874.8:c.2997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2997G>A
  hgvsp: ENST00000356870.3:c.2997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3009G>A
  hgvsp: ENST00000345512.3:c.3009G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2979G>A
  hgvsp: ENST00000373779.3:c.2979G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2997G>A
  hgvsp: ENST00000460170.2:c.2997G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1342G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.223G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8479
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1003Pro
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

1-29638179-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638179
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638179
    reference: chr 1
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.2998G>A
  hgvsp: ENSP00000432906.1:p.Glu1000Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2971G>A
  hgvsp: ENSP00000392332.2:p.Glu991Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.2998G>A
  hgvsp: ENSP00000349333.3:p.Glu1000Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1343G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2980G>A
  hgvsp: ENSP00000362884.3:p.Glu994Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3010G>A
  hgvsp: ENSP00000334941.5:p.Glu1004Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.2998G>A
  hgvsp: ENSP00000314987.8:p.Glu1000Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.224G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8480
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu1004Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum

1-29638190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638190
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638190
    reference: chr 1
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3021C>T
  hgvsp: ENST00000345512.3:c.3021C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2982C>T
  hgvsp: ENST00000428026.2:c.2982C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.235C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3009C>T
  hgvsp: ENST00000356870.3:c.3009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2991C>T
  hgvsp: ENST00000373779.3:c.2991C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3009C>T
  hgvsp: ENST00000460170.2:c.3009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1354C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3009C>T
  hgvsp: ENST00000323874.8:c.3009C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8482
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp1007Asp
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

1-29638196-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638196
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638196
    reference: chr 1
allele count: 43
allele frequency: 3.543469303667079e-4
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2988C>T
  hgvsp: ENST00000428026.2:c.2988C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3015C>T
  hgvsp: ENST00000356870.3:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3015C>T
  hgvsp: ENST00000460170.2:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1360C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3027C>T
  hgvsp: ENST00000345512.3:c.3027C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.241C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2997C>T
  hgvsp: ENST00000373779.3:c.2997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3015C>T
  hgvsp: ENST00000323874.8:c.3015C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8511
  bin: 9.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr1009Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-29638197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638197
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638197
    reference: chr 1
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1361G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3028G>A
  hgvsp: ENSP00000334941.5:p.Gly1010Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3016G>A
  hgvsp: ENSP00000349333.3:p.Gly1006Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.2998G>A
  hgvsp: ENSP00000362884.3:p.Gly1000Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3016G>A
  hgvsp: ENSP00000314987.8:p.Gly1006Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2989G>A
  hgvsp: ENSP00000392332.2:p.Gly997Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3016G>A
  hgvsp: ENSP00000432906.1:p.Gly1006Arg
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.242G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8504
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly1010Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-29638205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638205
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638205
    reference: chr 1
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3024C>T
  hgvsp: ENST00000356870.3:c.3024C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3024C>T
  hgvsp: ENST00000323874.8:c.3024C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.3006C>T
  hgvsp: ENST00000373779.3:c.3006C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.2997C>T
  hgvsp: ENST00000428026.2:c.2997C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3036C>T
  hgvsp: ENST00000345512.3:c.3036C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1369C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.250C>T
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3024C>T
  hgvsp: ENST00000460170.2:c.3024C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8504
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile1012Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-29638219-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638219
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1383T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3038T>C
  hgvsp: ENSP00000349333.3:p.Val1013Ala
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.3011T>C
  hgvsp: ENSP00000392332.2:p.Val1004Ala
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3038T>C
  hgvsp: ENSP00000314987.8:p.Val1013Ala
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3050T>C
  hgvsp: ENSP00000334941.5:p.Val1017Ala
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.264T>C
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3038T>C
  hgvsp: ENSP00000432906.1:p.Val1013Ala
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.3020T>C
  hgvsp: ENSP00000362884.3:p.Val1007Ala
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8504
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val1017Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

1-29638227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638227
    reference: chr 1
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3058G>A
  hgvsp: ENSP00000334941.5:p.Glu1020Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3046G>A
  hgvsp: ENSP00000314987.8:p.Glu1016Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.3028G>A
  hgvsp: ENSP00000362884.3:p.Glu1010Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.3019G>A
  hgvsp: ENSP00000392332.2:p.Glu1007Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3046G>A
  hgvsp: ENSP00000432906.1:p.Glu1016Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.272G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3046G>A
  hgvsp: ENSP00000349333.3:p.Glu1016Lys
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1391G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4153
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8601
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu1020Lys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-29638231-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638231
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638231
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3062C>A
  hgvsp: ENSP00000334941.5:p.Thr1021Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3050C>A
  hgvsp: ENSP00000314987.8:p.Thr1017Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.3032C>A
  hgvsp: ENSP00000362884.3:p.Thr1011Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1395C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.276C>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3050C>A
  hgvsp: ENSP00000349333.3:p.Thr1017Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3050C>A
  hgvsp: ENSP00000432906.1:p.Thr1017Asn
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.3023C>A
  hgvsp: ENSP00000392332.2:p.Thr1008Asn
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22047
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24690
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr1021Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-29638241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29638241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 29638241
    reference: chr 1
allele count: 2
allele frequency: 1.650491846570278e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000362884
  ensembl transcript: ENST00000373779
  gene symbol: PTPRU
  hgvsc: ENST00000373779.3:c.3042G>A
  hgvsp: ENST00000373779.3:c.3042G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000432906
  ensembl transcript: ENST00000460170
  gene symbol: PTPRU
  hgvsc: ENST00000460170.2:c.3060G>A
  hgvsp: ENST00000460170.2:c.3060G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000392332
  ensembl transcript: ENST00000428026
  gene symbol: PTPRU
  hgvsc: ENST00000428026.2:c.3033G>A
  hgvsp: ENST00000428026.2:c.3033G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000526080
  gene symbol: PTPRU
  hgvsc: ENST00000526080.1:n.286G>A
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000314987
  ensembl transcript: ENST00000323874
  gene symbol: PTPRU
  hgvsc: ENST00000323874.8:c.3060G>A
  hgvsp: ENST00000323874.8:c.3060G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000349333
  ensembl transcript: ENST00000356870
  gene symbol: PTPRU
  hgvsc: ENST00000356870.3:c.3060G>A
  hgvsp: ENST00000356870.3:c.3060G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000060656
  ensembl protein: ENSP00000334941
  ensembl transcript: ENST00000345512
  gene symbol: PTPRU
  hgvsc: ENST00000345512.3:c.3072G>A
  hgvsp: ENST00000345512.3:c.3072G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9683
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000060656
  ensembl transcript: ENST00000415600
  gene symbol: PTPRU
  hgvsc: ENST00000415600.2:n.1405G>A
  variant of: http://identifiers.org/hgnc/9683
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu1024Glu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

FS
type: SiteQuality
SIO_000300: 2.401e0

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 3.729563e6

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.729563e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

FS
type: SiteQuality
SIO_000300: 2.401e0

QD
type: SiteQuality
SIO_000300: 1.164e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53563
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.045949214026602e-4
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048972007432716e-4
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.965e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

DP
type: SiteQuality
SIO_000300: 3.729798e6

VQSLOD
type: SiteQuality
SIO_000300: 5.25e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.393e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 3.96e0

DP
type: SiteQuality
SIO_000300: 3.729875e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.238e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.173e1

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.788890841975742e-5
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.103e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.587691e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.587691e6

VQSLOD
type: SiteQuality
SIO_000300: 9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 3.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

GenotypeQuality
all individuals: 943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65852
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159911297277319e-5
allele num: 16234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.739e1

FS
type: SiteQuality
SIO_000300: 3.716e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.60738e6

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5312
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6789
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.672029e6

FS
type: SiteQuality
SIO_000300: 2.018e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

GenotypeQuality
all individuals: 1843
bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.702194357366771e-4
allele num: 6380
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
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FS
type: SiteQuality
SIO_000300: 9.57e-1

BaseQRankSum
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SIO_000300: -2.467e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

DP
type: SiteQuality
SIO_000300: 1.682016e6

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.466e0

FS
type: SiteQuality
SIO_000300: 5.23e0

MQRankSum
type: SiteQuality
SIO_000300: -1.473e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.887e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013500482160077e-5
allele num: 66368
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.026e1

DP
type: SiteQuality
SIO_000300: 1.694962e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
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SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 3.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.360000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.635922918434129e-4
allele num: 16502
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.544e0

QD
type: SiteQuality
SIO_000300: 1.04e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

DP
type: SiteQuality
SIO_000300: 1.712204e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.678e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.716162e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.397e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.425e0

QD
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
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allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
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allele frequency: 3.11994453431939e-3
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.303e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.719141e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

DP
type: SiteQuality
SIO_000300: 1.719266e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.77e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 1.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.237e0

VQSLOD
type: SiteQuality
SIO_000300: -2.627e0

DP
type: SiteQuality
SIO_000300: 1.724043e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

QD
type: SiteQuality
SIO_000300: 1.424e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 7

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5933
bin: 9.75e1
variant carriers: 138

African
type: Population
allele count: 30
allele frequency: 3.171917953055614e-3
allele num: 9458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 1.09310214851112e-2
allele num: 5306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.187084520417854e-3
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.286343612334801e-4
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 2.18257129201848e-3
allele num: 62770
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 7.317073170731708e-3
allele num: 820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.81625e2

DP
type: SiteQuality
SIO_000300: 1.831766e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.959e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e0

VQSLOD
type: SiteQuality
SIO_000300: -3.726e2

QD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.545e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8250
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8659
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.066544004906471e-4
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996641880546894e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.758043e6

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.225e2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.239e0

FS
type: SiteQuality
SIO_000300: 2.20067e2

QD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8285
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 1.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

QD
type: SiteQuality
SIO_000300: 1.387e1

DP
type: SiteQuality
SIO_000300: 1.76023e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.348920863309352e-4
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.76023e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.387e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 8285
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.455e0

QD
type: SiteQuality
SIO_000300: 1.387e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.101e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.76023e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4178
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GenotypeQuality
all individuals: 8289
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.517e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: -1.2e-1

DP
type: SiteQuality
SIO_000300: 1.760304e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

FS
type: SiteQuality
SIO_000300: 2.347e0

VQSLOD
type: SiteQuality
SIO_000300: -7.68e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4194
bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995024129972123e-5
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 1.761506e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.499e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.609840476648087e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 1.762018e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

QD
type: SiteQuality
SIO_000300: 1.302e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 5585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.398009651988849e-4
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

DP
type: SiteQuality
SIO_000300: 1.76262e6

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

QD
type: SiteQuality
SIO_000300: 1.721e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 17

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 8764
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.398081534772182e-4
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-4
allele num: 6598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.76267e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.719e1

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8318
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 1.762845e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.303e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.794e0

GenotypeQuality
all individuals: 5591
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 4201
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 9.77e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

DP
type: SiteQuality
SIO_000300: 1.763131e6

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.763131e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.763201e6

VQSLOD
type: SiteQuality
SIO_000300: -9.83e-2

FS
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 5609
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 24540
bin: 6.25e1
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GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496251874062968e-5
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.765033e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
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SIO_000300: 1.256e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.765205e6

ClippingRankSum
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SIO_000300: 9.26e-1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.712e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
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Other
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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SIO_000300: 2.81e-1

ClippingRankSum
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SIO_000300: -3.97e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.765466e6

BaseQRankSum
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SIO_000300: -2.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.649224864313773e-4
allele num: 66698
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

DP
type: SiteQuality
SIO_000300: 1.766032e6

MQRankSum
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SIO_000300: -2.29e-1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.5e1

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.172e0

QD
type: SiteQuality
SIO_000300: 1.637e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.075e0

FS
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.765887e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
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SIO_000300: 1.0e-4

VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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DP
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.610000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999400119976005e-5
allele num: 66680
num of homozygotes: 0

East Asian
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allele count: 7
allele frequency: 8.090614886731392e-4
allele num: 8652
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
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allele num: 66684
num of homozygotes: 0

Other
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Latino
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South Asian
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European (Finnish)
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allele count: 0
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African
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VQSLOD
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
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allele num: 11572
num of homozygotes: 0

Other
type: Population
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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QD
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ClippingRankSum
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MQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 3.069e0

VQSLOD
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SIO_000300: 1.29e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 8.997120921305183e-5
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African
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allele num: 10406
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East Asian
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South Asian
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allele num: 16498
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InbreedingCoeff
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ClippingRankSum
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MQ
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SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 3.176e0

DP
type: SiteQuality
SIO_000300: 1.767991e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
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SIO_000300: -7.8e-2

QD
type: SiteQuality
SIO_000300: 1.313e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.061e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.94e-1

MQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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SIO_000300: 1.76783e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.768519e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
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MQRankSum
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QD
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SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 4.28e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 3.636804461146806e-4
allele num: 16498
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.408e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.46e0

DP
type: SiteQuality
SIO_000300: 1.768506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.768663e6

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

FS
type: SiteQuality
SIO_000300: 4.167e0

QD
type: SiteQuality
SIO_000300: 1.125e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.768353e6

VQSLOD
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.820167455405897e-4
allele num: 16482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.768902e6

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.302e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499235130027895e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.768489e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

FS
type: SiteQuality
SIO_000300: 2.881e0

QD
type: SiteQuality
SIO_000300: 1.386e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 36

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.650046500465004e-4
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.770932e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.836e0

VQSLOD
type: SiteQuality
SIO_000300: 2.91e0

BaseQRankSum
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SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.439e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8609
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212856276531231e-4
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

FS
type: SiteQuality
SIO_000300: 7.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.770672e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 5595
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.206e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: -5.513e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.93e0

DP
type: SiteQuality
SIO_000300: 1.770929e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.047e-1

DP
type: SiteQuality
SIO_000300: 1.771067e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.655e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.429e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

FS
type: SiteQuality
SIO_000300: 7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 37

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
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allele count: 36
allele frequency: 3.459542571593312e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.893e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

DP
type: SiteQuality
SIO_000300: 1.773205e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-2

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.621e1

FS
type: SiteQuality
SIO_000300: 9.84e-1

DP
type: SiteQuality
SIO_000300: 1.772471e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.939e0

MQRankSum
type: SiteQuality
SIO_000300: -1.367e0

VQSLOD
type: SiteQuality
SIO_000300: -1.658e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.199868014518403e-4
allele num: 66674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

DP
type: SiteQuality
SIO_000300: 1.773094e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.66e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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SIO_000300: -1.407e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

FS
type: SiteQuality
SIO_000300: 2.567e0

QD
type: SiteQuality
SIO_000300: 1.853e1

DP
type: SiteQuality
SIO_000300: 1.773368e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.773779e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 9.31e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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ClippingRankSum
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FS
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DP
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SIO_000300: 1.776185e6

BaseQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

MQ
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SIO_000300: 5.98e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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FS
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
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BaseQRankSum
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QD
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FS
type: SiteQuality
SIO_000300: 4.538e0

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999130252226854e-5
allele num: 66686
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 40
allele frequency: 3.843936190659235e-3
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
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SIO_000300: -1.765e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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MQ
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DP
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VQSLOD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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BaseQRankSum
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ReadPosRankSum
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FS
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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allele frequency: 8.638562543192812e-5
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num of homozygotes: 0

European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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MQ
type: SiteQuality
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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FS
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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DP
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