http://identifiers.org/exac.variant/1-156130197-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130197
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130197
    reference: chr 1
allele count: 4
allele frequency: 3.295544423938835e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-37C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-37C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10267
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/1-156130199-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130199
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130199
    reference: chr 1
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-35C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-35C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

1-156130204-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130204
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130204
    reference: chr 1
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-30A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-30A>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

1-156130205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130205
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130205
    reference: chr 1
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-29G>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/1-156130208-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130208
    reference: chr 1
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-26C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-26C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-156130208-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130208
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-26C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-26C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-156130214-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130214
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130211
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-16_272-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-16_569-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-16_173-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-16_569-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-16_569-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-16_466-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-16_569-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-16_173-14delCTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-16_470-14delCTC
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10247
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: TCTC
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP

1-156130217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130217
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-17C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-156130221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130221
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130221
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-13T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-13T>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10246
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/1-156130226-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130226
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-8C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-8C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: c.569-8C>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

1-156130229-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130229
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130229
    reference: chr 1
allele count: 6
allele frequency: 4.942095118857387e-5
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.569-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.173-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.569-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.569-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.272-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.173-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.470-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.466-5C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.569-5C>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: c.569-5C>G
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-156130241-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130241
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130241
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.279G>A
  hgvsp: ENSP00000399230.1:p.Met93Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.576G>A
  hgvsp: ENSP00000401391.1:p.Met192Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.477G>A
  hgvsp: ENSP00000392865.1:p.Met159Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.576G>A
  hgvsp: ENSP00000347117.2:p.Met192Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.180G>A
  hgvsp: ENSP00000357269.2:p.Met60Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.473G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.180G>A
  hgvsp: ENSP00000357267.1:p.Met60Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.576G>A
  hgvsp: ENSP00000357268.3:p.Met192Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.576G>A
  hgvsp: ENSP00000357265.1:p.Met192Ile
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10241
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Met192Ile
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

1-156130257-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130257
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130257
    reference: chr 1
allele count: 3
allele frequency: 2.471210398853358e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.196A>G
  hgvsp: ENSP00000357267.1:p.Met66Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.592A>G
  hgvsp: ENSP00000357268.3:p.Met198Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.196A>G
  hgvsp: ENSP00000357269.2:p.Met66Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.592A>G
  hgvsp: ENSP00000347117.2:p.Met198Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.295A>G
  hgvsp: ENSP00000399230.1:p.Met99Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.493A>G
  hgvsp: ENSP00000392865.1:p.Met165Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.592A>G
  hgvsp: ENSP00000401391.1:p.Met198Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.592A>G
  hgvsp: ENSP00000357265.1:p.Met198Val
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.489A>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met198Val
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

1-156130258-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130258
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130258
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.197T>G
  hgvsp: ENSP00000357269.2:p.Met66Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.593T>G
  hgvsp: ENSP00000347117.2:p.Met198Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.593T>G
  hgvsp: ENSP00000401391.1:p.Met198Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.197T>G
  hgvsp: ENSP00000357267.1:p.Met66Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.296T>G
  hgvsp: ENSP00000399230.1:p.Met99Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.490T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.593T>G
  hgvsp: ENSP00000357265.1:p.Met198Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.593T>G
  hgvsp: ENSP00000357268.3:p.Met198Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.494T>G
  hgvsp: ENSP00000392865.1:p.Met165Arg
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met198Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-156130259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130259
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130259
    reference: chr 1
allele count: 5
allele frequency: 4.118751853438334e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.495G>A
  hgvsp: ENSP00000392865.1:p.Met165Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.198G>A
  hgvsp: ENSP00000357267.1:p.Met66Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.491G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.198G>A
  hgvsp: ENSP00000357269.2:p.Met66Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.594G>A
  hgvsp: ENSP00000357265.1:p.Met198Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.297G>A
  hgvsp: ENSP00000399230.1:p.Met99Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.594G>A
  hgvsp: ENSP00000401391.1:p.Met198Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.594G>A
  hgvsp: ENSP00000347117.2:p.Met198Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.594G>A
  hgvsp: ENSP00000357268.3:p.Met198Ile
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8979
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met198Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-156130267-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130267
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130267
    reference: chr 1
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.305T>C
  hgvsp: ENSP00000399230.1:p.Phe102Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.206T>C
  hgvsp: ENSP00000357269.2:p.Phe69Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.503T>C
  hgvsp: ENSP00000392865.1:p.Phe168Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.602T>C
  hgvsp: ENSP00000401391.1:p.Phe201Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.602T>C
  hgvsp: ENSP00000347117.2:p.Phe201Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.602T>C
  hgvsp: ENSP00000357265.1:p.Phe201Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.206T>C
  hgvsp: ENSP00000357267.1:p.Phe69Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.499T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.602T>C
  hgvsp: ENSP00000357268.3:p.Phe201Ser
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe201Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-156130272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130272
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130272
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.607G>A
  hgvsp: ENSP00000357268.3:p.Gly203Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.607G>A
  hgvsp: ENSP00000347117.2:p.Gly203Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.607G>A
  hgvsp: ENSP00000357265.1:p.Gly203Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.211G>A
  hgvsp: ENSP00000357267.1:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.310G>A
  hgvsp: ENSP00000399230.1:p.Gly104Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.211G>A
  hgvsp: ENSP00000357269.2:p.Gly71Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.607G>A
  hgvsp: ENSP00000401391.1:p.Gly203Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.504G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.508G>A
  hgvsp: ENSP00000392865.1:p.Gly170Ser
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10229
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly203Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-156130289-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130289
    reference: chr 1
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.228G>C
  hgvsp: ENST00000368284.1:c.228G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.624G>C
  hgvsp: ENST00000368285.3:c.624G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.228G>C
  hgvsp: ENST00000368286.2:c.228G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.624G>C
  hgvsp: ENST00000435124.1:c.624G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.327G>C
  hgvsp: ENST00000414683.1:c.327G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.525G>C
  hgvsp: ENST00000438830.1:c.525G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.521G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.624G>C
  hgvsp: ENST00000368282.1:c.624G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.624G>C
  hgvsp: ENST00000355014.2:c.624G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8947
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu208Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-156130291-T-TGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130293
    reference: chr 1
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: TGC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.629_630dupGC
  hgvsp: ENSP00000357265.1:p.Thr211AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.629_630dupGC
  hgvsp: ENSP00000401391.1:p.Thr211AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.526_527dupGC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.332_333dupGC
  hgvsp: ENSP00000399230.1:p.Thr112AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.233_234dupGC
  hgvsp: ENSP00000357267.1:p.Thr79AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.629_630dupGC
  hgvsp: ENSP00000357268.3:p.Thr211AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.530_531dupGC
  hgvsp: ENSP00000392865.1:p.Thr178AlafsTer?
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.233_234dupGC
  hgvsp: ENSP00000357269.2:p.Thr79AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.629_630dupGC
  hgvsp: ENSP00000347117.2:p.Thr211AlafsTer78
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2773
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr211AlafsTer78
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/1-156130307-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130307
    reference: chr 1
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.642C>A
  hgvsp: ENST00000368285.3:c.642C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.642C>A
  hgvsp: ENST00000368282.1:c.642C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.539C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.246C>A
  hgvsp: ENST00000368284.1:c.246C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.642C>A
  hgvsp: ENST00000435124.1:c.642C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.642C>A
  hgvsp: ENST00000355014.2:c.642C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.543C>A
  hgvsp: ENST00000438830.1:c.543C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.246C>A
  hgvsp: ENST00000368286.2:c.246C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.345C>A
  hgvsp: ENST00000414683.1:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser214Ser
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-156130319-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130319
    reference: chr 1
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.654C>G
  hgvsp: ENST00000368282.1:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.654C>G
  hgvsp: ENST00000368285.3:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.555C>G
  hgvsp: ENST00000438830.1:c.555C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.551C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.258C>G
  hgvsp: ENST00000368286.2:c.258C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.654C>G
  hgvsp: ENST00000435124.1:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.357C>G
  hgvsp: ENST00000414683.1:c.357C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.654C>G
  hgvsp: ENST00000355014.2:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.258C>G
  hgvsp: ENST00000368284.1:c.258C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10183
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu218Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-156130328-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130328
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130328
    reference: chr 1
allele count: 1
allele frequency: 8.264872638312644e-6
allele num: 120994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.663C>A
  hgvsp: ENSP00000401391.1:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.366C>A
  hgvsp: ENSP00000399230.1:p.Asp122Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.663C>A
  hgvsp: ENSP00000357265.1:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.663C>A
  hgvsp: ENSP00000357268.3:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.663C>A
  hgvsp: ENSP00000347117.2:p.Asp221Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.564C>A
  hgvsp: ENSP00000392865.1:p.Asp188Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.267C>A
  hgvsp: ENSP00000357269.2:p.Asp89Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.267C>A
  hgvsp: ENSP00000357267.1:p.Asp89Glu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.560C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp221Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-156130330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130330
    reference: chr 1
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.665A>G
  hgvsp: ENSP00000357265.1:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.665A>G
  hgvsp: ENSP00000401391.1:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.269A>G
  hgvsp: ENSP00000357269.2:p.Asn90Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.368A>G
  hgvsp: ENSP00000399230.1:p.Asn123Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.665A>G
  hgvsp: ENSP00000357268.3:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.269A>G
  hgvsp: ENSP00000357267.1:p.Asn90Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.665A>G
  hgvsp: ENSP00000347117.2:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.566A>G
  hgvsp: ENSP00000392865.1:p.Asn189Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.562A>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn222Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-156130350-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130350
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130350
    reference: chr 1
allele count: 1
allele frequency: 8.309098462816784e-6
allele num: 120350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289C>G
  hgvsp: ENSP00000357269.2:p.His97Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685C>G
  hgvsp: ENSP00000347117.2:p.His229Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388C>G
  hgvsp: ENSP00000399230.1:p.His130Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685C>G
  hgvsp: ENSP00000357265.1:p.His229Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289C>G
  hgvsp: ENSP00000357267.1:p.His97Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685C>G
  hgvsp: ENSP00000401391.1:p.His229Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586C>G
  hgvsp: ENSP00000392865.1:p.His196Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685C>G
  hgvsp: ENSP00000357268.3:p.His229Asp
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582C>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24903
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His229Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-156130357-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130356
    reference: chr 1
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+9delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+9delC
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 23939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 9.25e1
  variant carriers: 0
hgvs: c.685+9delC
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: AC
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

1-156130367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130367
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130367
    reference: chr 1
allele count: 2
allele frequency: 1.678612794386719e-5
allele num: 119146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+17C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+17C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20740
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7924
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10082
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

1-156130375-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130375
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130374
    reference: chr 1
allele count: 1
allele frequency: 8.424315945545221e-6
allele num: 118704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+27delC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+27delC
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: TC
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

1-156130381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130381
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130381
    reference: chr 1
allele count: 6
allele frequency: 5.068166844052506e-5
allele num: 118386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+31C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+31C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8004
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

1-156130382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130382
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130382
    reference: chr 1
allele count: 1
allele frequency: 8.452228007302725e-6
allele num: 118312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+32C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+32C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-156130384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130384
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130384
    reference: chr 1
allele count: 8
allele frequency: 6.776674685731711e-5
allele num: 118052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+34G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+34G>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16776
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-156130397-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130397
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130397
    reference: chr 1
allele count: 11
allele frequency: 9.446114212108201e-5
allele num: 116450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.685+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.16+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.582+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.685+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.289+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.586+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.685+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.289+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.388+47C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.685+47C>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7867
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14440
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11799
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7748
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS

1-156130645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130645
    reference: chr 1
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-51C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-51C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3173
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-156130646-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130646
    reference: chr 1
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-50C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-50C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

1-156130647-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130647
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130646
    reference: chr 1
allele count: 3
allele frequency: 2.472717681579902e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-46delG
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-46delG
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: AG
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

1-156130648-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130648
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130648
    reference: chr 1
allele count: 3
allele frequency: 2.472717681579902e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-48G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-48G>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10546
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-156130653-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130653
    reference: chr 1
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-43T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-43T>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10547
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-156130654-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130654
    reference: chr 1
allele count: 550
allele frequency: 4.533166293023869e-3
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-42G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-42G>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 8.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 7.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 9.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 7.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 13
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-156130654-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130654
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130654
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-42G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-42G>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-156130656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130656
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-40A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-40A>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-156130660-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130660
    reference: chr 1
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-36G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-36G>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

1-156130666-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130666
    reference: chr 1
allele count: 18
allele frequency: 1.483337179022316e-4
allele num: 121348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-30T>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-30T>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-156130675-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130675
    reference: chr 1
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-21C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-21C>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-156130687-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130687
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130687
    reference: chr 1
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-9C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-9C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-156130691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130691
    reference: chr 1
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-5C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-5C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: c.686-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-156130695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130695
    reference: chr 1
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-1G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-1G>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10595
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.686-1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

1-156130695-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130695
    reference: chr 1
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686-1G>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686-1G>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
hgvs: c.686-1G>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-156130696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130696
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130696
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.686A>G
  hgvsp: ENSP00000357265.1:p.His229Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.587A>G
  hgvsp: ENSP00000392865.1:p.His196Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.389A>G
  hgvsp: ENSP00000399230.1:p.His130Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.290A>G
  hgvsp: ENSP00000357267.1:p.His97Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.686A>G
  hgvsp: ENSP00000347117.2:p.His229Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.17A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.583A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.686A>G
  hgvsp: ENSP00000357268.3:p.His229Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.290A>G
  hgvsp: ENSP00000357269.2:p.His97Arg
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.686A>G
  hgvsp: ENSP00000401391.1:p.His229Arg
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His229Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-156130700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130700
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130700
    reference: chr 1
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.294C>T
  hgvsp: ENST00000368286.2:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.591C>T
  hgvsp: ENST00000438830.1:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.294C>T
  hgvsp: ENST00000368284.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.690C>T
  hgvsp: ENST00000435124.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.690C>T
  hgvsp: ENST00000368285.3:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.393C>T
  hgvsp: ENST00000414683.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.690C>T
  hgvsp: ENST00000355014.2:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.21C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.690C>T
  hgvsp: ENST00000368282.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.587C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp230Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

1-156130701-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130701
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130701
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.22G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.295G>A
  hgvsp: ENSP00000357267.1:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.394G>A
  hgvsp: ENSP00000399230.1:p.Ala132Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.691G>A
  hgvsp: ENSP00000347117.2:p.Ala231Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.592G>A
  hgvsp: ENSP00000392865.1:p.Ala198Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.588G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.691G>A
  hgvsp: ENSP00000401391.1:p.Ala231Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.691G>A
  hgvsp: ENSP00000357268.3:p.Ala231Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.691G>A
  hgvsp: ENSP00000357265.1:p.Ala231Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.295G>A
  hgvsp: ENSP00000357269.2:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala231Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-156130711-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130711
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130711
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.701T>C
  hgvsp: ENSP00000347117.2:p.Val234Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.701T>C
  hgvsp: ENSP00000401391.1:p.Val234Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.305T>C
  hgvsp: ENSP00000357267.1:p.Val102Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.32T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.598T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.305T>C
  hgvsp: ENSP00000357269.2:p.Val102Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.602T>C
  hgvsp: ENSP00000392865.1:p.Val201Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.701T>C
  hgvsp: ENSP00000357265.1:p.Val234Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.701T>C
  hgvsp: ENSP00000357268.3:p.Val234Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.404T>C
  hgvsp: ENSP00000399230.1:p.Val135Ala
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10597
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val234Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-156130717-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130717
    reference: chr 1
allele count: 7
allele frequency: 5.793455051065168e-5
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.604C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.707C>G
  hgvsp: ENSP00000357265.1:p.Ala236Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.707C>G
  hgvsp: ENSP00000357268.3:p.Ala236Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.410C>G
  hgvsp: ENSP00000399230.1:p.Ala137Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.311C>G
  hgvsp: ENSP00000357267.1:p.Ala104Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.38C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.608C>G
  hgvsp: ENSP00000392865.1:p.Ala203Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.707C>G
  hgvsp: ENSP00000347117.2:p.Ala236Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.311C>G
  hgvsp: ENSP00000357269.2:p.Ala104Gly
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.707C>G
  hgvsp: ENSP00000401391.1:p.Ala236Gly
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10610
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 3
hgvs: p.Ala236Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

1-156130722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130722
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130722
    reference: chr 1
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.712C>T
  hgvsp: ENSP00000357265.1:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.712C>T
  hgvsp: ENSP00000347117.2:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.613C>T
  hgvsp: ENSP00000392865.1:p.Pro205Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.316C>T
  hgvsp: ENSP00000357267.1:p.Pro106Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.712C>T
  hgvsp: ENSP00000401391.1:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.316C>T
  hgvsp: ENSP00000357269.2:p.Pro106Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.712C>T
  hgvsp: ENSP00000357268.3:p.Pro238Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.43C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.609C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.415C>T
  hgvsp: ENSP00000399230.1:p.Pro139Ser
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10603
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro238Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-156130741-ACTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130741
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130738
    reference: chr 1
allele count: 4
allele frequency: 3.295327225993541e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.343_345delTTC
  hgvsp: ENSP00000357267.1:p.Phe115del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.739_741delTTC
  hgvsp: ENSP00000401391.1:p.Phe247del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.739_741delTTC
  hgvsp: ENSP00000347117.2:p.Phe247del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.343_345delTTC
  hgvsp: ENSP00000357269.2:p.Phe115del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.640_642delTTC
  hgvsp: ENSP00000392865.1:p.Phe214del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.636_638delTTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.739_741delTTC
  hgvsp: ENSP00000357265.1:p.Phe247del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.9_11delTTC
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.442_444delTTC
  hgvsp: ENSP00000399230.1:p.Phe148del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.739_741delTTC
  hgvsp: ENSP00000357268.3:p.Phe247del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.70_72delTTC
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10604
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe247del
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: ACTT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-156130752-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130752
    reference: chr 1
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.643G>C
  hgvsp: ENSP00000392865.1:p.Glu215Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.639G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.346G>C
  hgvsp: ENSP00000357267.1:p.Glu116Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.742G>C
  hgvsp: ENSP00000357268.3:p.Glu248Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.742G>C
  hgvsp: ENSP00000357265.1:p.Glu248Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.445G>C
  hgvsp: ENSP00000399230.1:p.Glu149Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.346G>C
  hgvsp: ENSP00000357269.2:p.Glu116Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.12G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.73G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.742G>C
  hgvsp: ENSP00000347117.2:p.Glu248Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.742G>C
  hgvsp: ENSP00000401391.1:p.Glu248Gln
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu248Gln
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

1-156130769-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130769
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130769
    reference: chr 1
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.90G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.462G>A
  hgvsp: ENST00000414683.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.656G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.660G>A
  hgvsp: ENST00000438830.1:c.660G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.759G>A
  hgvsp: ENST00000355014.2:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.759G>A
  hgvsp: ENST00000435124.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.363G>A
  hgvsp: ENST00000368284.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.363G>A
  hgvsp: ENST00000368286.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.29G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.759G>A
  hgvsp: ENST00000368282.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.759G>A
  hgvsp: ENST00000368285.3:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu253Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-156130771-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130771
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130771
    reference: chr 1
allele count: 2
allele frequency: 1.64774506088418e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.761T>C
  hgvsp: ENSP00000357265.1:p.Phe254Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.92T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.761T>C
  hgvsp: ENSP00000347117.2:p.Phe254Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.761T>C
  hgvsp: ENSP00000401391.1:p.Phe254Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.658T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.662T>C
  hgvsp: ENSP00000392865.1:p.Phe221Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.365T>C
  hgvsp: ENSP00000357267.1:p.Phe122Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.761T>C
  hgvsp: ENSP00000357268.3:p.Phe254Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.365T>C
  hgvsp: ENSP00000357269.2:p.Phe122Ser
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.31T>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.464T>C
  hgvsp: ENSP00000399230.1:p.Phe155Ser
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10606
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe254Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-156130773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130773
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130773
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.33G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.664G>A
  hgvsp: ENSP00000392865.1:p.Asp222Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.94G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.763G>A
  hgvsp: ENSP00000401391.1:p.Asp255Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.763G>A
  hgvsp: ENSP00000357268.3:p.Asp255Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.367G>A
  hgvsp: ENSP00000357269.2:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.466G>A
  hgvsp: ENSP00000399230.1:p.Asp156Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.367G>A
  hgvsp: ENSP00000357267.1:p.Asp123Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.763G>A
  hgvsp: ENSP00000357265.1:p.Asp255Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.763G>A
  hgvsp: ENSP00000347117.2:p.Asp255Asn
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.660G>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp255Asn
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-156130774-ACTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130771
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.768_770delCTT
  hgvsp: ENSP00000357265.1:p.Phe257del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.768_770delCTT
  hgvsp: ENSP00000347117.2:p.Phe257del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.38_40delCTT
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.665_667delCTT
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.372_374delCTT
  hgvsp: ENSP00000357269.2:p.Phe125del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.768_770delCTT
  hgvsp: ENSP00000401391.1:p.Phe257del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.768_770delCTT
  hgvsp: ENSP00000357268.3:p.Phe257del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.669_671delCTT
  hgvsp: ENSP00000392865.1:p.Phe224del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.372_374delCTT
  hgvsp: ENSP00000357267.1:p.Phe125del
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.99_101delCTT
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.471_473delCTT
  hgvsp: ENSP00000399230.1:p.Phe158del
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe257del
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: ACTT
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/1-156130791-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130791
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130792
    reference: chr 1
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.782dupA
  hgvsp: ENSP00000401391.1:p.His261GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.782dupA
  hgvsp: ENSP00000357268.3:p.His261GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.386dupA
  hgvsp: ENSP00000357267.1:p.His129GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.386dupA
  hgvsp: ENSP00000357269.2:p.His129GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.113dupA
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.683dupA
  hgvsp: ENSP00000392865.1:p.His228GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.782dupA
  hgvsp: ENSP00000357265.1:p.His261GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.782dupA
  hgvsp: ENSP00000347117.2:p.His261GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.679dupA
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.52dupA
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.485dupA
  hgvsp: ENSP00000399230.1:p.His162GlnfsTer7
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10608
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His261GlnfsTer7
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD

1-156130794-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130794
    reference: chr 1
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.784A>G
  hgvsp: ENSP00000401391.1:p.Thr262Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.388A>G
  hgvsp: ENSP00000357267.1:p.Thr130Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.784A>G
  hgvsp: ENSP00000347117.2:p.Thr262Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.681A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.784A>G
  hgvsp: ENSP00000357265.1:p.Thr262Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.784A>G
  hgvsp: ENSP00000357268.3:p.Thr262Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.685A>G
  hgvsp: ENSP00000392865.1:p.Thr229Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.487A>G
  hgvsp: ENSP00000399230.1:p.Thr163Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.388A>G
  hgvsp: ENSP00000357269.2:p.Thr130Ala
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.54A>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.115A>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10609
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr262Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

1-156130795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130795
    reference: chr 1
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.488C>T
  hgvsp: ENSP00000399230.1:p.Thr163Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.785C>T
  hgvsp: ENSP00000357268.3:p.Thr262Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.785C>T
  hgvsp: ENSP00000357265.1:p.Thr262Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.389C>T
  hgvsp: ENSP00000357267.1:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.686C>T
  hgvsp: ENSP00000392865.1:p.Thr229Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.55C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.682C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.389C>T
  hgvsp: ENSP00000357269.2:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.785C>T
  hgvsp: ENSP00000401391.1:p.Thr262Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.785C>T
  hgvsp: ENSP00000347117.2:p.Thr262Ile
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.116C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10611
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr262Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-156130796-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130796
    reference: chr 1
allele count: 2
allele frequency: 1.648913366091746e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.786A>T
  hgvsp: ENST00000368285.3:c.786A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.687A>T
  hgvsp: ENST00000438830.1:c.687A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.390A>T
  hgvsp: ENST00000368284.1:c.390A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.786A>T
  hgvsp: ENST00000435124.1:c.786A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.117A>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.390A>T
  hgvsp: ENST00000368286.2:c.390A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.786A>T
  hgvsp: ENST00000368282.1:c.786A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.489A>T
  hgvsp: ENST00000414683.1:c.489A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.786A>T
  hgvsp: ENST00000355014.2:c.786A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.56A>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.683A>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10613
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr262Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-156130798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130798
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130798
    reference: chr 1
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.788C>T
  hgvsp: ENSP00000401391.1:p.Ser263Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.788C>T
  hgvsp: ENSP00000357268.3:p.Ser263Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.119C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.58C>T
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.788C>T
  hgvsp: ENSP00000347117.2:p.Ser263Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.392C>T
  hgvsp: ENSP00000357267.1:p.Ser131Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.689C>T
  hgvsp: ENSP00000392865.1:p.Ser230Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.788C>T
  hgvsp: ENSP00000357265.1:p.Ser263Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.392C>T
  hgvsp: ENSP00000357269.2:p.Ser131Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.491C>T
  hgvsp: ENSP00000399230.1:p.Ser164Leu
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.685C>T
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser263Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-156130801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130801
    reference: chr 1
allele count: 1
allele frequency: 8.245382585751979e-6
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.395G>A
  hgvsp: ENSP00000357269.2:p.Arg132Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.61G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.494G>A
  hgvsp: ENSP00000399230.1:p.Arg165Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.791G>A
  hgvsp: ENSP00000401391.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.791G>A
  hgvsp: ENSP00000357268.3:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.122G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.791G>A
  hgvsp: ENSP00000357265.1:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.395G>A
  hgvsp: ENSP00000357267.1:p.Arg132Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.791G>A
  hgvsp: ENSP00000347117.2:p.Arg264Gln
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.688G>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.692G>A
  hgvsp: ENSP00000392865.1:p.Arg231Gln
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg264Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-156130809-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130809
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130809
    reference: chr 1
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.700A>C
  hgvsp: ENST00000438830.1:c.700A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.502A>C
  hgvsp: ENST00000414683.1:c.502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.130A>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.799A>C
  hgvsp: ENST00000368282.1:c.799A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.403A>C
  hgvsp: ENST00000368284.1:c.403A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.403A>C
  hgvsp: ENST00000368286.2:c.403A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.799A>C
  hgvsp: ENST00000435124.1:c.799A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.799A>C
  hgvsp: ENST00000368285.3:c.799A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.696A>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.69A>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.799A>C
  hgvsp: ENST00000355014.2:c.799A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg267Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

1-156130810-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130810
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130810
    reference: chr 1
allele count: 2
allele frequency: 1.651145895251304e-5
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.800G>C
  hgvsp: ENSP00000347117.2:p.Arg267Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.800G>C
  hgvsp: ENSP00000357265.1:p.Arg267Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.70G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000392865
  ensembl transcript: ENST00000438830
  gene symbol: SEMA4A
  hgvsc: ENST00000438830.1:c.701G>C
  hgvsp: ENSP00000392865.1:p.Arg234Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.503G>C
  hgvsp: ENSP00000399230.1:p.Arg168Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.800G>C
  hgvsp: ENSP00000357268.3:p.Arg267Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.404G>C
  hgvsp: ENSP00000357267.1:p.Arg135Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.800G>C
  hgvsp: ENSP00000401391.1:p.Arg267Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.404G>C
  hgvsp: ENSP00000357269.2:p.Arg135Thr
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.131G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.697G>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg267Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-156130824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130824
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130824
    reference: chr 1
allele count: 1
allele frequency: 8.306061763875276e-6
allele num: 120394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.810+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.80+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.414+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.414+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.707+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.810+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.513+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.810+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.141+4C>A
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.810+4C>A
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10615
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
hgvs: c.810+4C>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-156130827-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130827
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130827
    reference: chr 1
allele count: 2
allele frequency: 1.664475107774763e-5
allele num: 120158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.141+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.414+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.810+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.513+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.810+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.810+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.80+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.810+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.707+7G>C
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.414+7G>C
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10617
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 6.75e1
  variant carriers: 0
hgvs: c.810+7G>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-156130830-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 156130830
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 156130830
    reference: chr 1
allele count: 1
allele frequency: 8.323899580475461e-6
allele num: 120136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000399230
  ensembl transcript: ENST00000414683
  gene symbol: SEMA4A
  hgvsc: ENST00000414683.1:c.513+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000469065
  gene symbol: SEMA4A
  hgvsc: ENST00000469065.1:n.80+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357267
  ensembl transcript: ENST00000368284
  gene symbol: SEMA4A
  hgvsc: ENST00000368284.1:c.414+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000347117
  ensembl transcript: ENST00000355014
  gene symbol: SEMA4A
  hgvsc: ENST00000355014.2:c.810+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357269
  ensembl transcript: ENST00000368286
  gene symbol: SEMA4A
  hgvsc: ENST00000368286.2:c.414+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000466698
  gene symbol: SEMA4A
  hgvsc: ENST00000466698.1:n.141+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357265
  ensembl transcript: ENST00000368282
  gene symbol: SEMA4A
  hgvsc: ENST00000368282.1:c.810+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000401391
  ensembl transcript: ENST00000435124
  gene symbol: SEMA4A
  hgvsc: ENST00000435124.1:c.810+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl transcript: ENST00000487358
  gene symbol: SEMA4A
  hgvsc: ENST00000487358.1:n.707+10C>G
  variant of: http://identifiers.org/hgnc/10729
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196189
  ensembl protein: ENSP00000357268
  ensembl transcript: ENST00000368285
  gene symbol: SEMA4A
  hgvsc: ENST00000368285.3:c.810+10C>G
  variant of: http://identifiers.org/hgnc/10729
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10618
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8949
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496268097479092e-5
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.214e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

FS
type: SiteQuality
SIO_000300: 1.442e0

DP
type: SiteQuality
SIO_000300: 2.165289e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32328
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10259
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 713
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.256e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.165548e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32409
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.165883e6

FS
type: SiteQuality
SIO_000300: 4.987e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

QD
type: SiteQuality
SIO_000300: 8.83e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.956e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.071e0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10249
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.166151e6

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.566e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.294e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1677
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.121e0

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

DP
type: SiteQuality
SIO_000300: 2.166358e6

FS
type: SiteQuality
SIO_000300: 2.595e0

QD
type: SiteQuality
SIO_000300: 1.068e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.121e0

QD
type: SiteQuality
SIO_000300: 1.068e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

FS
type: SiteQuality
SIO_000300: 2.595e0

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.166358e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.901e1

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
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SIO_000300: -1.468e0

VQSLOD
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ClippingRankSum
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SIO_000300: -7.06e-1

MQRankSum
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InbreedingCoeff
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SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
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DP
type: SiteQuality
SIO_000300: 2.166503e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.11e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.337e0

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -2.126e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
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SIO_000300: -6.063e-1

QD
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InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

DP
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MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.166711e6

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.095e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.247e1

VQSLOD
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SIO_000300: 1.04e0

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -6.49e-1

FS
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.166896e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
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DP
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495459585818323e-5
allele num: 66734
num of homozygotes: 0

DP
type: SiteQuality
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MQ
type: SiteQuality
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.354e0

InbreedingCoeff
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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South Asian
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African
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQRankSum
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49265719594797e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
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FS
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VQSLOD
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
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MQ
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 1.16e0

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.52e-1

BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10402
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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DP
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.002e1

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 2.351e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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East Asian
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DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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Other
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VQSLOD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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allele num: 66568
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African
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Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.989000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.75e1

BaseQRankSum
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SIO_000300: 4.45e0

VQSLOD
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SIO_000300: -1.352e0

DP
type: SiteQuality
SIO_000300: 2.147003e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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DP
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ReadPosRankSum
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SIO_000300: -7.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.181e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.815e0

MQRankSum
type: SiteQuality
SIO_000300: -1.253e0

FS
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 2.08362e6

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043954705953975e-5
allele num: 65704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1833e1

VQSLOD
type: SiteQuality
SIO_000300: -1.307e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.725e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

DP
type: SiteQuality
SIO_000300: 2.005574e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16210
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

FS
type: SiteQuality
SIO_000300: 3.781e0

MQ
type: SiteQuality
SIO_000300: 6.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.621e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.947025e6

QD
type: SiteQuality
SIO_000300: 1.176e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.185548071034906e-5
allele num: 65320
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.895388e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 9.369999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -4.803e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.531909678605349e-5
allele num: 65278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
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MQ
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DP
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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BaseQRankSum
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SIO_000300: 9.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

Latino
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allele count: 0
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allele num: 11028
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 4.951720722951226e-4
allele num: 16156
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.483e0

VQSLOD
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.709667391980106e-4
allele num: 64340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.371e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

DP
type: SiteQuality
SIO_000300: 1.782536e6

FS
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 51110
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 963
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.839e1

FS
type: SiteQuality
SIO_000300: 1.364e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.977000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.268895e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

GenotypeQuality
all individuals: 898
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-2

QD
type: SiteQuality
SIO_000300: 1.274e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.042e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 4.268879e6

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

GenotypeQuality
all individuals: 3290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
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variant carriers: 0

GenotypeQuality
all individuals: 124
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 51109
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variant carriers: 3

GenotypeQuality
all individuals: 960
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variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
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variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.026e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 4.26911e6

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
all individuals: 959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 893
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1457
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51105
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 157
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

QD
type: SiteQuality
SIO_000300: 1.372e1

FS
type: SiteQuality
SIO_000300: 1.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.166e0

DP
type: SiteQuality
SIO_000300: 4.268959e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 51112
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variant carriers: 2

GenotypeQuality
all individuals: 961
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 3530
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999310158663508e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 5.847e0

DP
type: SiteQuality
SIO_000300: 4.270107e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.729e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51184
bin: 9.75e1
variant carriers: 536

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 655
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 954
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 10
allele frequency: 8.640055296353896e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 535
allele frequency: 5.149181905678537e-2
allele num: 10390
num of homozygotes: 13

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498695378340282e-5
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

FS
type: SiteQuality
SIO_000300: 1.528e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 4.274303e6

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 76
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 954
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.528e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

DP
type: SiteQuality
SIO_000300: 4.274303e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51042
bin: 9.75e1
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GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 49
bin: 5.25e1
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GenotypeQuality
all individuals: 892
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GenotypeQuality
all individuals: 3684
bin: 6.25e1
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 668
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GenotypeQuality
all individuals: 960
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.272874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.43e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

MQRankSum
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SIO_000300: 8.090000000000001e-1

FS
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SIO_000300: 2.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
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SIO_000300: -9.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

BaseQRankSum
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SIO_000300: -2.285e0

QD
type: SiteQuality
SIO_000300: 1.249e1

MQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

FS
type: SiteQuality
SIO_000300: 3.41e0

DP
type: SiteQuality
SIO_000300: 4.27353e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 15
allele frequency: 2.248808131690204e-4
allele num: 66702
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
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SIO_000300: 4.38e0

DP
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SIO_000300: 4.27465e6

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

FS
type: SiteQuality
SIO_000300: 1.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
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SIO_000300: 1.136e1

DP
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SIO_000300: 4.275381e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

MQRankSum
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SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 3.944e0

BaseQRankSum
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SIO_000300: -2.676e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.73e0

FS
type: SiteQuality
SIO_000300: 5.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 4.276186e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.469812630117973e-4
allele num: 8646
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 2.299e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
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VQSLOD
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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FS
type: SiteQuality
SIO_000300: 3.489e0

InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
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SIO_000300: 9.02e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.276297e6

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

ReadPosRankSum
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FS
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SIO_000300: 5.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
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SIO_000300: 6.19e-1

FS
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.276136e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.624e0

DP
type: SiteQuality
SIO_000300: 4.276055e6

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.77e-1

VQSLOD
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SIO_000300: 4.28e-1

MQRankSum
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SIO_000300: -6.96e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.276958e6

FS
type: SiteQuality
SIO_000300: 1.495e0

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 607
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variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.939111886755866e-4
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011141222523336e-5
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.60546515198035e-4
allele num: 6514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.863e1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 4.277568e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.709999999999999e1

FS
type: SiteQuality
SIO_000300: 1.35694e2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.396e0

QD
type: SiteQuality
SIO_000300: 4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.676e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1454
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313208420078649e-4
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 4.272616e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
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SIO_000300: -2.8e-2

InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.91e-1

ReadPosRankSum
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ClippingRankSum
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SIO_000300: -4.91e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
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VQSLOD
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.16e-1

InbreedingCoeff
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SIO_000300: 6.6e-3

FS
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 5.51e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.25e-1

MQ
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
type: SiteQuality
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MQRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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South Asian
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European (Non-Finnish)
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Latino
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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Other
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African
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East Asian
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European (Finnish)
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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South Asian
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QD
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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Other
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South Asian
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MQ
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FS
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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African
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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MQ
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QD
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FS
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 1.767e0

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.163e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 4.270833e6

GenotypeDepth
all individuals: 2192
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

ReadPosRankSum
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SIO_000300: 1.13e0

MQ
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SIO_000300: 5.964e1

MQRankSum
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SIO_000300: -5.659999999999999e-1

FS
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SIO_000300: 4.57e-1

QD
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SIO_000300: 1.22e1

BaseQRankSum
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SIO_000300: -1.427e0

DP
type: SiteQuality
SIO_000300: 4.270356e6

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 4.269365e6

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

InbreedingCoeff
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QD
type: SiteQuality
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DP
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SIO_000300: 4.26528e6

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 892
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ReadPosRankSum
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SIO_000300: 1.3e0

MQ
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QD
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DP
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SIO_000300: 4.265214e6

InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.127e0

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509023963300537e-5
allele num: 66268
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

InbreedingCoeff
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MQ
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SIO_000300: 5.956e1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 1.399e0

BaseQRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023797284630038e-5
allele num: 66142
num of homozygotes: 0

Other
type: Population
allele count: 0
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FS
type: SiteQuality
SIO_000300: 3.718e0

ReadPosRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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