3-187443251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443251
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443251
    reference: chr 3
allele count: 6
allele frequency: 6.391001469930338e-5
allele num: 93882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+36C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8061G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6908G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+36C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+36C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+36C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+36C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-187443254-TGCCCGCTCCGCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443254
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443241
    reference: chr 3
allele count: 3315
allele frequency: 2.943631455565817e-2
allele num: 112616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.75e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 7.5e0
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 3.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 14396
  bin: 2.25e1
  variant carriers: 669
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 5.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 4.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 4.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 13434
  bin: 2.75e1
  variant carriers: 679
genotype depth: GenotypeDepth
  all individuals: 10836
  bin: 3.25e1
  variant carriers: 641
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 3358
  bin: 7.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 16443
  bin: 6.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 1.75e1
  variant carriers: 333
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.25e1
  variant carriers: 187
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 5.25e1
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 1.25e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 9.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 10221
  bin: 9.75e1
  variant carriers: 1572
genotype quality: GenotypeQuality
  all individuals: 6444
  bin: 6.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 7.5e0
  variant carriers: 316
num of homozygotes: 55
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: TGCCCGCTCCGCTC
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

3-187443258-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443258
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443258
    reference: chr 3
allele count: 1
allele frequency: 1.056434744025862e-5
allele num: 94658
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8054C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6901C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+29G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+29G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+29G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+29G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+29G>C
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2980
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

3-187443258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443258
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443258
    reference: chr 3
allele count: 15
allele frequency: 1.584652116038792e-4
allele num: 94658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+29G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+29G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+29G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+29G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6901C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+29G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8054C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12495
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16356
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7763
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

3-187443259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443259
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443259
    reference: chr 3
allele count: 9
allele frequency: 9.610661427076437e-5
allele num: 93646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+28C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+28C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+28C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8053G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+28C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+28C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6900G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

3-187443259-GCTCCGCTCGCCTGCCCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443259
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443242
    reference: chr 3
allele count: 14
allele frequency: 1.494991777545224e-4
allele num: 93646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12447
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16443
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: GCTCCGCTCGCCTGCCCA
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-187443263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443263
    reference: chr 3
allele count: 2
allele frequency: 2.119811760715649e-5
allele num: 94348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+24G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+24G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6896C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8049C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+24G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+24G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+24G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17122
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-187443264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443264
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443264
    reference: chr 3
allele count: 7
allele frequency: 7.365164874476547e-5
allele num: 95042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+23C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+23C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+23C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+23C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+23C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8048G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6895G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

3-187443267-C-CGCCTGCCCACTCCTCCGCTCGCCTGCCCGCTCCGCTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443267
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443304
    reference: chr 3
allele count: 3
allele frequency: 2.637177165561982e-5
allele num: 113758
alternate allele: CGCCTGCCCACTCCTCCGCTCGCCTGCCCGCTCCGCTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18312
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2804
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-187443267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443267
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443267
    reference: chr 3
allele count: 355
allele frequency: 3.120659645915012e-3
allele num: 113758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+20G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+20G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8045C>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+20G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+20G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6892C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+20G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10905
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15318
  bin: 2.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 2.5e0
  variant carriers: 436
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 1.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.5e0
  variant carriers: 142
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 5.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 3.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 4.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 9541
  bin: 9.75e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 6897
  bin: 6.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 4757
  bin: 7.75e1
  variant carriers: 11
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-187443268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443268
    reference: chr 3
allele count: 332
allele frequency: 2.78290025146689e-3
allele num: 119300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6891G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8044G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+19C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11704
  bin: 9.75e1
  variant carriers: 329
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

3-187443268-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443268
    reference: chr 3
allele count: 1
allele frequency: 8.382229673093043e-6
allele num: 119300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+19C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8044G>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+19C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+19C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6891G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+19C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+19C>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4995
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

3-187443268-G-GCCTGCCCGCTCTGCTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443285
    reference: chr 3
allele count: 3
allele frequency: 2.514668901927913e-5
allele num: 119300
alternate allele: GCCTGCCCGCTCTGCTCA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2798
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

3-187443276-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443276
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443276
    reference: chr 3
allele count: 7
allele frequency: 5.796909419149676e-5
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6883A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8036A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+11T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+11T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+11T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+11T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+11T>C
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11733
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21773
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-187443284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443284
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443284
    reference: chr 3
allele count: 4
allele frequency: 3.307753373908441e-5
allele num: 120928
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1839+3G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6875C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1609+3G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.125+3G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8028C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1839+3G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1671+3G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22050
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1839+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

3-187443292-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443292
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443292
    reference: chr 3
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1834G>A
  hgvsp: ENSP00000384371.2:p.Val612Ile
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6867C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1666G>A
  hgvsp: ENSP00000413122.2:p.Val556Ile
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1604G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.120G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1834G>A
  hgvsp: ENSP00000232014.4:p.Val612Ile
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8020C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7891
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3715
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11702
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val612Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-187443305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443305
    reference: chr 3
allele count: 7
allele frequency: 5.769674590353104e-5
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1591C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1653C>T
  hgvsp: ENST00000450123.2:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.107C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1821C>T
  hgvsp: ENST00000232014.4:c.1821C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8007G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1821C>T
  hgvsp: ENST00000406870.2:c.1821C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6854G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12253
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4352
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys607Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-187443307-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443307
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443307
    reference: chr 3
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6852A>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1819T>A
  hgvsp: ENSP00000384371.2:p.Cys607Ser
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8005A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1651T>A
  hgvsp: ENSP00000413122.2:p.Cys551Ser
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.105T>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1819T>A
  hgvsp: ENSP00000232014.4:p.Cys607Ser
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1589T>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22397
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys607Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

3-187443310-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443310
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.102A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1816A>G
  hgvsp: ENSP00000232014.4:p.Thr606Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1648A>G
  hgvsp: ENSP00000413122.2:p.Thr550Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1586A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1816A>G
  hgvsp: ENSP00000384371.2:p.Thr606Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-8002T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6849T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr606Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

3-187443314-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443314
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443314
    reference: chr 3
allele count: 8488
allele frequency: 6.993721470593083e-2
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6845G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1644C>T
  hgvsp: ENST00000450123.2:c.1644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1582C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1812C>T
  hgvsp: ENST00000406870.2:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7998G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1812C>T
  hgvsp: ENST00000232014.4:c.1812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.98C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5756
  bin: 9.75e1
  variant carriers: 5574
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 4.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 6.25e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 13647
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys604Cys
num of homozygotes: 324
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

3-187443346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443346
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.66C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7966G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1550C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1780C>T
  hgvsp: ENSP00000232014.4:p.Arg594Ter
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1612C>T
  hgvsp: ENSP00000413122.2:p.Arg538Ter
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6813G>A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1780C>T
  hgvsp: ENSP00000384371.2:p.Arg594Ter
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg594Ter
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

3-187443353-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443353
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443353
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7959G>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1543C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6806G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1605C>G
  hgvsp: ENST00000450123.2:c.1605C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1773C>G
  hgvsp: ENST00000406870.2:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1773C>G
  hgvsp: ENST00000232014.4:c.1773C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.59C>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr591Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

3-187443371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443371
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443371
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7941C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1525G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1755G>A
  hgvsp: ENST00000232014.4:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6788C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1755G>A
  hgvsp: ENST00000406870.2:c.1755G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1587G>A
  hgvsp: ENST00000450123.2:c.1587G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.41G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg585Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-187443392-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443392
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443392
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.20C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1734C>T
  hgvsp: ENST00000232014.4:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1504C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1734C>T
  hgvsp: ENST00000406870.2:c.1734C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1566C>T
  hgvsp: ENST00000450123.2:c.1566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7920G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6767G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15213
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile578Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

3-187443403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443403
    reference: chr 3
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1723C>T
  hgvsp: ENSP00000232014.4:p.Arg575Cys
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7909G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1555C>T
  hgvsp: ENSP00000413122.2:p.Arg519Cys
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1723C>T
  hgvsp: ENSP00000384371.2:p.Arg575Cys
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.9C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1493C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6756G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg575Cys
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

3-187443409-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443409
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443409
    reference: chr 3
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1717C>G
  hgvsp: ENSP00000232014.4:p.Pro573Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1717C>G
  hgvsp: ENSP00000384371.2:p.Pro573Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7903G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1549C>G
  hgvsp: ENSP00000413122.2:p.Pro517Ala
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6750G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.3C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1487C>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5139
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro573Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

3-187443410-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443410
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443410
    reference: chr 3
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6749T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000113916
  ensembl transcript: ENST00000479110
  gene symbol: BCL6
  hgvsc: ENST00000479110.1:n.2A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1716A>G
  hgvsp: ENST00000406870.2:c.1716A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1716A>G
  hgvsp: ENST00000232014.4:c.1716A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1548A>G
  hgvsp: ENST00000450123.2:c.1548A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7902T>C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1486A>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11820
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys572Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

3-187443429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443429
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443429
    reference: chr 3
allele count: 16
allele frequency: 1.322095521401421e-4
allele num: 121020
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-12T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-12T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-12T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7883A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-12T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6730A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12339
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-187443442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443442
    reference: chr 3
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6717G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7870G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-25C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-25C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-25C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-25C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2090
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-187443457-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443457
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443457
    reference: chr 3
allele count: 2
allele frequency: 1.658539821541115e-5
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-40T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6702A>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-40T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-40T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-40T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7855A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11529
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11814
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-187443458-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443458
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443458
    reference: chr 3
allele count: 1
allele frequency: 8.294900295298451e-6
allele num: 120556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-41A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6701T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7854T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-41A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-41A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-41A>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7287
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5063
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-187443460-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443460
    reference: chr 3
allele count: 2
allele frequency: 1.659999004000598e-5
allele num: 120482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6699A>C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-43T>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-43T>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7852A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-43T>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-43T>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11392
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11814
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

3-187443464-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443464
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443464
    reference: chr 3
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-47T>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6695A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7848A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-47T>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-47T>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-47T>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11812
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-187443466-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187443466
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187443466
    reference: chr 3
allele count: 1
allele frequency: 8.329446258412741e-6
allele num: 120056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1709-49C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-7846G>T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1479-49C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-49C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1709-49C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-6693G>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2537
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11810
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2082
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

3-187444469-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444469
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444469
    reference: chr 3
allele count: 1
allele frequency: 8.491126772522713e-6
allele num: 117770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+50G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1052G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+50G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+50G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5690C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6843C>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-187444473-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444473
    reference: chr 3
allele count: 8
allele frequency: 6.79174802614823e-5
allele num: 117790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5686C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+46G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1056G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6839C>G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+46G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+46G>C
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24830
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

3-187444473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444473
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444473
    reference: chr 3
allele count: 1
allele frequency: 8.489685032685287e-6
allele num: 117790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+46G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6839C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+46G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+46G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1056G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5686C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8022
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4935
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/3-187444475-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444475
    reference: chr 3
allele count: 2
allele frequency: 1.69537501695375e-5
allele num: 117968
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+44G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5684C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+44G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1058G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6837C>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+44G>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24828
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-187444478-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444478
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444478
    reference: chr 3
allele count: 1
allele frequency: 8.463244130740195e-6
allele num: 118158
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5681A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+41T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+41T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+41T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1061T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6834A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24830
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-187444482-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444482
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444482
    reference: chr 3
allele count: 3
allele frequency: 2.538586515028432e-5
allele num: 118176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+37A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5677T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1065A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+37A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+37A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6830T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8760
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5033
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

3-187444494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444494
    reference: chr 3
allele count: 6
allele frequency: 5.059960532307848e-5
allele num: 118578
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6818C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1077G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+25G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+25G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+25G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5665C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24833
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-187444494-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444494
    reference: chr 3
allele count: 1
allele frequency: 8.433267553846413e-6
allele num: 118578
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+25G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5665C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6818C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+25G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1077G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+25G>C
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9388
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24833
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

3-187444495-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444495
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444495
    reference: chr 3
allele count: 2
allele frequency: 1.680418088020299e-5
allele num: 119018
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+24C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5664G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+24C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1078C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+24C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6817G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-187444500-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444500
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444500
    reference: chr 3
allele count: 15
allele frequency: 1.254957080467848e-4
allele num: 119526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+19C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1083C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5659G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6812G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+19C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8632
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6673
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10524
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-187444505-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444505
    reference: chr 3
allele count: 32
allele frequency: 2.667644803094468e-4
allele num: 119956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1088C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5654G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+14C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+14C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+14C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6807G>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10968
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24836
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-187444508-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444508
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444508
    reference: chr 3
allele count: 7
allele frequency: 5.828282155465263e-5
allele num: 120104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1478+11G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6804C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1708+11G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5651C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1708+11G>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1091G>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5396
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-187444520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444520
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444520
    reference: chr 3
allele count: 3
allele frequency: 2.484389751064147e-5
allele num: 120754
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1103C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5639G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6792G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1707C>T
  hgvsp: ENST00000232014.4:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1477C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1707C>T
  hgvsp: ENST00000406870.2:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4537
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24820
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1707C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-187444529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444529
    reference: chr 3
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1698C>T
  hgvsp: ENST00000232014.4:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6783G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1468C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1698C>T
  hgvsp: ENST00000406870.2:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5630G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1112C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24821
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr566Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

3-187444531-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444531
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444531
    reference: chr 3
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6781T>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1696A>C
  hgvsp: ENSP00000384371.2:p.Thr566Pro
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1696A>C
  hgvsp: ENSP00000232014.4:p.Thr566Pro
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1114A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1466A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5628T>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr566Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

3-187444543-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444543
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444543
    reference: chr 3
allele count: 3599
allele frequency: 3.253539207000669e-2
allele num: 110618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1454G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1126G>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1684G>C
  hgvsp: ENSP00000232014.4:p.Ala562Pro
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6769C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1684G>C
  hgvsp: ENSP00000384371.2:p.Ala562Pro
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5616C>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 1931
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 6.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 4.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 5.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 8.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4095
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 7.5e0
  variant carriers: 24
hgvs: p.Ala562Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

3-187444543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444543
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444543
    reference: chr 3
allele count: 3
allele frequency: 2.71203601583829e-5
allele num: 110618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1126G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1684G>A
  hgvsp: ENSP00000384371.2:p.Ala562Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1684G>A
  hgvsp: ENSP00000232014.4:p.Ala562Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5616C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1454G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6769C>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4095
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21046
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ala562Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-187444544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444544
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444544
    reference: chr 3
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1683C>T
  hgvsp: ENST00000232014.4:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5615G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1453C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6768G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1127C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1683C>T
  hgvsp: ENST00000406870.2:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24806
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu561Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-187444545-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444545
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444545
    reference: chr 3
allele count: 3597
allele frequency: 3.075410396716826e-2
allele num: 116960
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1682T>C
  hgvsp: ENSP00000384371.2:p.Leu561Pro
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5614A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6767A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1452T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1128T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1682T>C
  hgvsp: ENSP00000232014.4:p.Leu561Pro
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 5.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 8.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 8844
  bin: 3.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 6.25e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 5.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 2.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2588
  bin: 9.75e1
  variant carriers: 1531
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 7.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 9.25e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 4.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 4.25e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 4176
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 3.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 6.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 9.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 11095
  bin: 6.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 24
hgvs: p.Leu561Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-187444548-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444548
    reference: chr 3
allele count: 27
allele frequency: 2.274297073737765e-4
allele num: 118718
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1679A>C
  hgvsp: ENSP00000232014.4:p.Asn560Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6764T>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1679A>C
  hgvsp: ENSP00000384371.2:p.Asn560Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1449A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1131A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5611T>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22207
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Asn560Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-187444549-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444549
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444549
    reference: chr 3
allele count: 3
allele frequency: 2.477414240177052e-5
allele num: 121094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1448A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1678A>C
  hgvsp: ENSP00000232014.4:p.Asn560His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1132A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1678A>C
  hgvsp: ENSP00000384371.2:p.Asn560His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6763T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5610T>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4880
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22605
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 1
hgvs: p.Asn560His
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-187444550-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444550
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444550
    reference: chr 3
allele count: 3
allele frequency: 2.47520667975776e-5
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6762G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1133C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1677C>T
  hgvsp: ENST00000406870.2:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1677C>T
  hgvsp: ENST00000232014.4:c.1677C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5609G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1447C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4534
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12355
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2964
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly559Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

3-187444559-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444559
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444559
    reference: chr 3
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5600G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1142C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1668C>T
  hgvsp: ENST00000232014.4:c.1668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6753G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1668C>T
  hgvsp: ENST00000406870.2:c.1668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1438C>T
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4600
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg556Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum

3-187444565-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444565
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444565
    reference: chr 3
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1662C>A
  hgvsp: ENST00000406870.2:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1148C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1662C>A
  hgvsp: ENST00000232014.4:c.1662C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1432C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5594G>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6747G>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22556
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4504
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser554Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ

3-187444575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444575
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444575
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1652G>A
  hgvsp: ENSP00000384371.2:p.Cys551Tyr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6737C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1422G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5584C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1652G>A
  hgvsp: ENSP00000232014.4:p.Cys551Tyr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1158G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys551Tyr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-187444578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444578
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444578
    reference: chr 3
allele count: 5
allele frequency: 4.121671750061825e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1419G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6734C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1161G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1649G>A
  hgvsp: ENSP00000232014.4:p.Arg550His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5581C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1649G>A
  hgvsp: ENSP00000384371.2:p.Arg550His
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4500
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22547
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg550His
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-187444586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444586
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444586
    reference: chr 3
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1169G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1641G>A
  hgvsp: ENST00000406870.2:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6726C>T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1411G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5573C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1641G>A
  hgvsp: ENST00000232014.4:c.1641G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4497
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22543
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys547Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-187444589-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444589
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444589
    reference: chr 3
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1638C>T
  hgvsp: ENST00000406870.2:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5570G>A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1408C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1172C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6723G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1638C>T
  hgvsp: ENST00000232014.4:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22542
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr546Tyr
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-187444591-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444591
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444591
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1636T>C
  hgvsp: ENSP00000232014.4:p.Tyr546His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1636T>C
  hgvsp: ENSP00000384371.2:p.Tyr546His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6721A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5568A>G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1406T>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1174T>C
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4851
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr546His
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

3-187444593-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444593
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444593
    reference: chr 3
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5566G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1634C>A
  hgvsp: ENSP00000232014.4:p.Pro545His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1404C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1634C>A
  hgvsp: ENSP00000384371.2:p.Pro545His
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1176C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6719G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4496
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6014
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro545His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ

3-187444598-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444598
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444598
    reference: chr 3
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5561G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1629C>A
  hgvsp: ENSP00000232014.4:p.Asp543Glu
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1181C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1629C>A
  hgvsp: ENSP00000384371.2:p.Asp543Glu
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1399C>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6714G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4494
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp543Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-187444616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444616
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1381G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5543C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1611G>A
  hgvsp: ENST00000232014.4:c.1611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6696C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1611G>A
  hgvsp: ENST00000406870.2:c.1611G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1199G>A
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9154
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr537Thr
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

3-187444617-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444617
    reference: chr 3
allele count: 4
allele frequency: 3.295870274545994e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5542G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1610C>T
  hgvsp: ENSP00000384371.2:p.Thr537Met
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1610C>T
  hgvsp: ENSP00000232014.4:p.Thr537Met
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1200C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1380C>T
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6695G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22538
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Thr537Met
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-187444622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444622
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444622
    reference: chr 3
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1375G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1605G>A
  hgvsp: ENST00000406870.2:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6690C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1205G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5537C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1605G>A
  hgvsp: ENST00000232014.4:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22536
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4843
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg535Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-187444623-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444623
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444623
    reference: chr 3
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1604G>A
  hgvsp: ENSP00000384371.2:p.Arg535Lys
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1206G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1374G>A
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1604G>A
  hgvsp: ENSP00000232014.4:p.Arg535Lys
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6689C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5536C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg535Lys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-187444624-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444624
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444624
    reference: chr 3
allele count: 12
allele frequency: 9.88793671720501e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1603A>G
  hgvsp: ENSP00000232014.4:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6688T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1603A>G
  hgvsp: ENSP00000384371.2:p.Arg535Gly
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5535T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1207A>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1373A>G
  variant of: http://identifiers.org/hgnc/1001
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg535Gly
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-187444626-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444626
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444626
    reference: chr 3
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1371A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1601A>C
  hgvsp: ENSP00000384371.2:p.Lys534Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1601A>C
  hgvsp: ENSP00000232014.4:p.Lys534Thr
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1209A>C
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6686T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5533T>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys534Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-187444628-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444628
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444628
    reference: chr 3
allele count: 7
allele frequency: 5.768058142026072e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000232014
  ensembl transcript: ENST00000232014
  gene symbol: BCL6
  hgvsc: ENST00000232014.4:c.1599C>G
  hgvsp: ENST00000232014.4:c.1599C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000407813
  ensembl transcript: ENST00000449623
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000449623.1:c.130-6684G>C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000384371
  ensembl transcript: ENST00000406870
  gene symbol: BCL6
  hgvsc: ENST00000406870.2:c.1599C>G
  hgvsp: ENST00000406870.2:c.1599C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000413122
  ensembl transcript: ENST00000450123
  gene symbol: BCL6
  hgvsc: ENST00000450123.2:c.1541-1211C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000113916
  ensembl protein: ENSP00000398014
  ensembl transcript: ENST00000419510
  gene symbol: BCL6
  hgvsc: ENST00000419510.2:c.*1369C>G
  variant of: http://identifiers.org/hgnc/1001
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000228804
  ensembl protein: ENSP00000396953
  ensembl transcript: ENST00000437407
  gene symbol: RP11-211G3.3
  hgvsc: ENST00000437407.1:c.130-5531G>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9156
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22532
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu533Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/3-187444633-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 187444633
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 187444633
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: C
canonical: true
consequence: missense
filter: PASS
hgvs: p.Ser532Ala
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 649
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7675
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15066
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.858736059479554e-4
allele num: 10760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.656967840735069e-5
allele num: 52240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

FS
type: SiteQuality
SIO_000300: 1.656e0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

DP
type: SiteQuality
SIO_000300: 1.430395e6

GenotypeQuality
all individuals: 1191
bin: 3.75e1
variant carriers: 202

GenotypeQuality
all individuals: 885
bin: 4.75e1
variant carriers: 158

GenotypeQuality
all individuals: 620
bin: 2.5e0
variant carriers: 269

GenotypeQuality
all individuals: 1953
bin: 2.25e1
variant carriers: 324

GenotypeQuality
all individuals: 3660
bin: 8.25e1
variant carriers: 78

GenotypeQuality
all individuals: 4371
bin: 7.75e1
variant carriers: 79

GenotypeQuality
all individuals: 2048
bin: 8.75e1
variant carriers: 71

GenotypeQuality
all individuals: 1369
bin: 3.25e1
variant carriers: 228

Other
type: Population
allele count: 21
allele frequency: 2.424942263279446e-2
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 435
allele frequency: 4.623724489795918e-2
allele num: 9408
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 156
allele frequency: 2.550686723348594e-2
allele num: 6116
num of homozygotes: 4

South Asian
type: Population
allele count: 756
allele frequency: 5.168877341720225e-2
allele num: 14626
num of homozygotes: 15

Latino
type: Population
allele count: 170
allele frequency: 1.538461538461539e-2
allele num: 11050
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1731
allele frequency: 2.779204932245842e-2
allele num: 62284
num of homozygotes: 21

East Asian
type: Population
allele count: 46
allele frequency: 5.564964916525526e-3
allele num: 8266
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.614e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.798603e6

FS
type: SiteQuality
SIO_000300: 2.839e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.131e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.322e0

QD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.898686109212425e-5
allele num: 52668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 1.454753e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 2.396e0

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

QD
type: SiteQuality
SIO_000300: 1.609e1

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3386
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.024291497975708e-4
allele num: 9880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.594744436849701e-5
allele num: 52668
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 9.408602150537635e-4
allele num: 7440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.688172043010753e-3
allele num: 744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.609e1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.454753e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 2.396e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7540
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6912
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.529850746268657e-4
allele num: 10720
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.016880211511084e-4
allele num: 9834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.910876710234656e-5
allele num: 52332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5110
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.46419e6

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

QD
type: SiteQuality
SIO_000300: 3.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7540
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 6024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.565557729941292e-3
allele num: 5110
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.146526026140793e-4
allele num: 52332
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 3.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.46419e6

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7577
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.899046678567359e-5
allele num: 52658
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.295408068414203e-5
allele num: 10758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8092
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 2.007e0

QD
type: SiteQuality
SIO_000300: 1.389e1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.472794e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
all individuals: 17446
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7838
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4106
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.850481125092524e-4
allele num: 10808
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.338329764453962e-4
allele num: 7472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.781147200060498e-5
allele num: 52894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.368e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 1.342e0

VQSLOD
type: SiteQuality
SIO_000300: -2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.476778e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4757
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4026
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9541
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 849
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6897
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62608
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.980720982437607e-4
allele num: 15146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.627e0

QD
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: -3.824e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.428e0

DP
type: SiteQuality
SIO_000300: 1.72459e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.595e1

GenotypeQuality
all individuals: 849
bin: 5.25e1
variant carriers: 18

GenotypeQuality
all individuals: 579
bin: 3.75e1
variant carriers: 26

GenotypeQuality
all individuals: 551
bin: 2.5e0
variant carriers: 139

GenotypeQuality
all individuals: 18312
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 247
bin: 1.25e1
variant carriers: 95

GenotypeQuality
all individuals: 3706
bin: 7.25e1
variant carriers: 18

GenotypeQuality
all individuals: 4026
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2804
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 459
bin: 2.75e1
variant carriers: 46

Latino
type: Population
allele count: 50
allele frequency: 4.464285714285714e-3
allele num: 11200
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.888528839922229e-3
allele num: 9258
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.289909995262909e-4
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 165
allele frequency: 2.635445949399438e-3
allele num: 62608
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.608294930875576e-3
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 30
allele frequency: 4.812319538017324e-3
allele num: 6234
num of homozygotes: 0

South Asian
type: Population
allele count: 63
allele frequency: 4.159514063118975e-3
allele num: 15146
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.824e-1

QD
type: SiteQuality
SIO_000300: 2.92e0

MQ
type: SiteQuality
SIO_000300: 5.595e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.428e0

FS
type: SiteQuality
SIO_000300: 1.627e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

DP
type: SiteQuality
SIO_000300: 1.72459e6

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4268
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2143
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 152
allele frequency: 2.317214464296604e-3
allele num: 65596
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.666666666666667e-3
allele num: 900
num of homozygotes: 1

Latino
type: Population
allele count: 11
allele frequency: 9.575208913649025e-4
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.017501508750754e-4
allele num: 9942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 160
allele frequency: 2.447980416156671e-2
allele num: 6536
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.981581e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20391
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524483200195134e-5
allele num: 65596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 1.981581e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

QD
type: SiteQuality
SIO_000300: 1.483e1

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4995
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11704
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.740947075208914e-4
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524483200195134e-5
allele num: 65596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.981581e6

QD
type: SiteQuality
SIO_000300: 1.483e1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7802
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.045953443492944e-5
allele num: 66328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.427e0

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 2.095e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.978571e6

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11698
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.018476723541272e-5
allele num: 66462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.735e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.355e0

FS
type: SiteQuality
SIO_000300: 3.494e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.982585e6

VQSLOD
type: SiteQuality
SIO_000300: -1.568e0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22253
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501095799933952e-5
allele num: 66618
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.079e-1

FS
type: SiteQuality
SIO_000300: 5.694e0

MQRankSum
type: SiteQuality
SIO_000300: 2.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

DP
type: SiteQuality
SIO_000300: 1.986278e6

QD
type: SiteQuality
SIO_000300: 1.468e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498965237995261e-5
allele num: 66682
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.918e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.988143e6

FS
type: SiteQuality
SIO_000300: 6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.169e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.834e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 8.103e0

QD
type: SiteQuality
SIO_000300: 1.81e1

DP
type: SiteQuality
SIO_000300: 1.988244e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.686e0

MQ
type: SiteQuality
SIO_000300: 5.533e1

DP
type: SiteQuality
SIO_000300: 1.988373e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8159

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 1

GenotypeQuality
all individuals: 3650
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 850
allele frequency: 9.831135785334259e-2
allele num: 8646
num of homozygotes: 35

Latino
type: Population
allele count: 308
allele frequency: 2.661137031277e-2
allele num: 11574
num of homozygotes: 5

Other
type: Population
allele count: 60
allele frequency: 6.607929515418502e-2
allele num: 908
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 5124
allele frequency: 7.680546811763647e-2
allele num: 66714
num of homozygotes: 221

European (Finnish)
type: Population
allele count: 564
allele frequency: 8.5273661929241e-2
allele num: 6614
num of homozygotes: 19

African
type: Population
allele count: 676
allele frequency: 6.5e-2
allele num: 10400
num of homozygotes: 20

South Asian
type: Population
allele count: 906
allele frequency: 5.487583282858873e-2
allele num: 16510
num of homozygotes: 23

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 6.22e-1

DP
type: SiteQuality
SIO_000300: 2.647054e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 4.48e0

VQSLOD
type: SiteQuality
SIO_000300: -2.12e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.853e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.802e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 2.031514e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.022e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

DP
type: SiteQuality
SIO_000300: 2.031502e6

FS
type: SiteQuality
SIO_000300: 8.621e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.358e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
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allele num: 10404
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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FS
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.030331e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.242e0

VQSLOD
type: SiteQuality
SIO_000300: -1.499e0

FS
type: SiteQuality
SIO_000300: 4.415e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 2.029863e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22546
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
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GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

DP
type: SiteQuality
SIO_000300: 2.029608e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

QD
type: SiteQuality
SIO_000300: 1.869e1

FS
type: SiteQuality
SIO_000300: 3.925e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

VQSLOD
type: SiteQuality
SIO_000300: -1.095e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11831
bin: 9.75e1
variant carriers: 16

Latino
type: Population
allele count: 13
allele frequency: 1.125541125541126e-3
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004627125773691e-5
allele num: 66564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 2.983e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 1.541e1

DP
type: SiteQuality
SIO_000300: 2.02255e6

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 205
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variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21296
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.827e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.925e0

DP
type: SiteQuality
SIO_000300: 2.011391e6

FS
type: SiteQuality
SIO_000300: 4.2216e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.794e0

QD
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7325
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.682416731216112e-5
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.974395e6

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeQuality
all individuals: 261
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
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variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 17231
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 2.076e0

DP
type: SiteQuality
SIO_000300: 1.971779e6

MQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5052
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variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4198
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variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.937984496124031e-4
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.527e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.967424e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3395
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6696
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GenotypeQuality
all individuals: 114
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511852926947267e-5
allele num: 66144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.582e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.95886e6

VQSLOD
type: SiteQuality
SIO_000300: -4.592e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3195
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GenotypeQuality
all individuals: 5028
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2548
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513912859175826e-5
allele num: 66054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.108e0

VQSLOD
type: SiteQuality
SIO_000300: -4.987e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.887e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 1.958236e6

GenotypeQuality
all individuals: 342
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2325
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GenotypeQuality
all individuals: 4406
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.754e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 2.471467e6

VQSLOD
type: SiteQuality
SIO_000300: -2.725e0

QD
type: SiteQuality
SIO_000300: 1.337e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.551e0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
all individuals: 914
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GenotypeQuality
all individuals: 2315
bin: 8.75e1
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 1380
bin: 2.25e1
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GenotypeQuality
all individuals: 3877
bin: 9.25e1
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GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14286
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.933610677760444e-4
allele num: 11538
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.692e1

DP
type: SiteQuality
SIO_000300: 2.474885e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

GenotypeQuality
all individuals: 446
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24830
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.999860002799944e-5
allele num: 14286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.692e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.33e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 2.474885e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 109
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4962
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4175
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3875
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GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.902e0

VQSLOD
type: SiteQuality
SIO_000300: -7.261e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

DP
type: SiteQuality
SIO_000300: 2.4776e6

FS
type: SiteQuality
SIO_000300: 1.0546e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 4186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521051350693599e-5
allele num: 65744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 2.480594e6

QD
type: SiteQuality
SIO_000300: 1.554e1

FS
type: SiteQuality
SIO_000300: 1.743e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e0

GenotypeQuality
all individuals: 295
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 3877
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variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.066400330624053e-4
allele num: 14518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.55e0

VQSLOD
type: SiteQuality
SIO_000300: 7.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.445e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.484591e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

GenotypeQuality
all individuals: 9388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 430
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variant carriers: 0

GenotypeQuality
all individuals: 4432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14796
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.314279102059708e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.535155050660117e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038128512836093e-5
allele num: 65830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

FS
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.500885e6

GenotypeQuality
all individuals: 2319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 539
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variant carriers: 0

GenotypeQuality
all individuals: 430
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variant carriers: 0

GenotypeQuality
all individuals: 4197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3878
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.243e0

FS
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 2.500885e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 24831
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515840533575868e-5
allele num: 65970
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

FS
type: SiteQuality
SIO_000300: 1.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 2.504475e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 1.168e1

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2696
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variant carriers: 0

GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 4479
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variant carriers: 0

GenotypeQuality
all individuals: 24839
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.238341968911917e-4
allele num: 15440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.210836991070077e-4
allele num: 66070
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.516107e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.284e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4488
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.624275693809088e-4
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.625377643504532e-4
allele num: 66200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 2.524054e6

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e-1

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 750
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24819
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-4
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.056603773584906e-5
allele num: 66250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.525856e6

MQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 5.93e0

QD
type: SiteQuality
SIO_000300: 1.172e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.163e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 11555
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 4248
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GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 5523
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variant carriers: 0

GenotypeQuality
all individuals: 2336
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variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.23395853899309e-4
allele num: 16208
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.341e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

FS
type: SiteQuality
SIO_000300: 1.858e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.537372e6

QD
type: SiteQuality
SIO_000300: 2.231e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

GenotypeQuality
all individuals: 4253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

QD
type: SiteQuality
SIO_000300: 1.068e1

VQSLOD
type: SiteQuality
SIO_000300: -5.184e-1

DP
type: SiteQuality
SIO_000300: 2.542117e6

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2336
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.685e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 1.71641e2

DP
type: SiteQuality
SIO_000300: 2.543533e6

VQSLOD
type: SiteQuality
SIO_000300: -1.381e2

QD
type: SiteQuality
SIO_000300: 2.11e0

MQ
type: SiteQuality
SIO_000300: 5.729e1

GenotypeQuality
all individuals: 343
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 4847
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 9793
bin: 6.25e1
variant carriers: 24

GenotypeQuality
all individuals: 21046
bin: 9.75e1
variant carriers: 3285

GenotypeQuality
all individuals: 473
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 15

GenotypeQuality
all individuals: 468
bin: 3.75e1
variant carriers: 31

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 19

Latino
type: Population
allele count: 193
allele frequency: 1.812206572769953e-2
allele num: 10650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 508
allele frequency: 9.968602825745683e-2
allele num: 5096
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2075
allele frequency: 3.390522875816993e-2
allele num: 61200
num of homozygotes: 0

Other
type: Population
allele count: 44
allele frequency: 5.612244897959184e-2
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 559
allele frequency: 6.268221574344024e-2
allele num: 8918
num of homozygotes: 0

East Asian
type: Population
allele count: 192
allele frequency: 2.359302039813222e-2
allele num: 8138
num of homozygotes: 0

South Asian
type: Population
allele count: 28
allele frequency: 1.768569984840829e-3
allele num: 15832
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.41112e2

MQ
type: SiteQuality
SIO_000300: 5.77e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

DP
type: SiteQuality
SIO_000300: 2.872178e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.541e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.065e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.074e0

QD
type: SiteQuality
SIO_000300: 5.14e0

GenotypeQuality
all individuals: 479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4309
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3520
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 5.886970172684458e-4
allele num: 5096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.14e0

MQ
type: SiteQuality
SIO_000300: 5.77e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.074e0

FS
type: SiteQuality
SIO_000300: 3.41112e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.065e0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

DP
type: SiteQuality
SIO_000300: 2.872178e6

VQSLOD
type: SiteQuality
SIO_000300: -5.541e2

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.828e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.519e0

MQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

DP
type: SiteQuality
SIO_000300: 2.785099e6

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 19

GenotypeQuality
all individuals: 223
bin: 4.25e1
variant carriers: 25

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 22

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 24

GenotypeQuality
all individuals: 22473
bin: 9.75e1
variant carriers: 3272

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 27

GenotypeQuality
all individuals: 2323
bin: 8.75e1
variant carriers: 15

GenotypeQuality
all individuals: 4508
bin: 7.75e1
variant carriers: 22

South Asian
type: Population
allele count: 29
allele frequency: 1.77153329260843e-3
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 200
allele frequency: 1.747946163258172e-2
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 551
allele frequency: 5.689797604295745e-2
allele num: 9684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 507
allele frequency: 8.826601671309192e-2
allele num: 5744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2073
allele frequency: 3.223047980347648e-2
allele num: 64318
num of homozygotes: 0

East Asian
type: Population
allele count: 193
allele frequency: 2.256782039289055e-2
allele num: 8552
num of homozygotes: 0

Other
type: Population
allele count: 44
allele frequency: 5.176470588235294e-2
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.796e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

FS
type: SiteQuality
SIO_000300: 1.91686e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.175e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e0

QD
type: SiteQuality
SIO_000300: 5.94e0

DP
type: SiteQuality
SIO_000300: 2.690648e6

GenotypeQuality
all individuals: 4063
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11324
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4701
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4401
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5590
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2458
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.953506544246923e-4
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.55913194127838e-5
allele num: 65802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 22
allele frequency: 4.168245547555892e-3
allele num: 5278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.022e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.413e0

FS
type: SiteQuality
SIO_000300: 1.225e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

DP
type: SiteQuality
SIO_000300: 2.505678e6

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5934
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.60546515198035e-4
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.395e1

VQSLOD
type: SiteQuality
SIO_000300: -1.718e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

FS
type: SiteQuality
SIO_000300: 5.4038e1

QD
type: SiteQuality
SIO_000300: 2.41e0

MQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 2.489325e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.905e0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22617
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2533
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504775061565259e-5
allele num: 66596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.408e0

DP
type: SiteQuality
SIO_000300: 2.489713e6

FS
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4887
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.095e0

QD
type: SiteQuality
SIO_000300: 1.273e1

DP
type: SiteQuality
SIO_000300: 2.490634e6

VQSLOD
type: SiteQuality
SIO_000300: 5.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.490827e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.491083e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.500180007200288e-5
allele num: 66664
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.324e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.59e-1

DP
type: SiteQuality
SIO_000300: 2.491359e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2506
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.863e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-2

DP
type: SiteQuality
SIO_000300: 2.491196e6

MQRankSum
type: SiteQuality
SIO_000300: 7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.07e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

FS
type: SiteQuality
SIO_000300: 3.341e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.865e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 2.491258e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.53e-1

DP
type: SiteQuality
SIO_000300: 2.491307e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.61e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 2.41e0

MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
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VQSLOD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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Latino
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East Asian
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MQ
type: SiteQuality
SIO_000300: 5.751e1

ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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VQSLOD
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
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allele num: 8650
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African
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Other
type: Population
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European (Finnish)
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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QD
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -8.287e-1

FS
type: SiteQuality
SIO_000300: 6.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.196e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.491526e6

MQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.759e0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2500
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.639e0

MQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.019e0

DP
type: SiteQuality
SIO_000300: 2.49144e6

VQSLOD
type: SiteQuality
SIO_000300: 9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 22539
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2911
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.499115521842113e-4
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.63e0

FS
type: SiteQuality
SIO_000300: 1.114e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 2.491799e6

QD
type: SiteQuality
SIO_000300: 1.341e1

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13170
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.795e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

FS
type: SiteQuality
SIO_000300: 5.088e0

DP
type: SiteQuality
SIO_000300: 2.491223e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.712e0

QD
type: SiteQuality
SIO_000300: 1.509e1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049412329095706e-4
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.491333e6

QD
type: SiteQuality
SIO_000300: 1.377e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1