http://identifiers.org/exac.variant/2-152273111-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273111
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273111
    reference: chr 2
allele count: 3
allele frequency: 2.473084595980413e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.317A>C
  hgvsp: ENSP00000243326.4:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.367A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.317A>C
  hgvsp: ENSP00000390181.2:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.317A>C
  hgvsp: ENSP00000414615.2:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.317A>C
  hgvsp: ENSP00000416123.2:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.317A>C
  hgvsp: ENSP00000415691.2:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.291A>C
  hgvsp: ENSP00000390486.2:p.Asp98Ala
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.317A>C
  hgvsp: ENSP00000396865.2:p.Asp106Ala
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46029
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp106Ala
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-152273116-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273116
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273116
    reference: chr 2
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.322A>G
  hgvsp: ENSP00000390181.2:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.296A>G
  hgvsp: ENSP00000390486.2:p.Ile100Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.322A>G
  hgvsp: ENSP00000243326.4:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.322A>G
  hgvsp: ENSP00000414615.2:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.322A>G
  hgvsp: ENSP00000396865.2:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.322A>G
  hgvsp: ENSP00000416123.2:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.322A>G
  hgvsp: ENSP00000415691.2:p.Ile108Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.372A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6400
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile108Val
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-152273122-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273122
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273122
    reference: chr 2
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.378A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.328A>G
  hgvsp: ENSP00000390181.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.328A>G
  hgvsp: ENSP00000415691.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.328A>G
  hgvsp: ENSP00000416123.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.328A>G
  hgvsp: ENSP00000243326.4:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.328A>G
  hgvsp: ENSP00000414615.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.328A>G
  hgvsp: ENSP00000396865.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.302A>G
  hgvsp: ENSP00000390486.2:p.Asn102Asp
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn110Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-152273135-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273135
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273135
    reference: chr 2
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.341A>G
  hgvsp: ENSP00000416123.2:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.341A>G
  hgvsp: ENSP00000396865.2:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.315A>G
  hgvsp: ENSP00000390486.2:p.Asn106Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.391A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.341A>G
  hgvsp: ENSP00000390181.2:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.341A>G
  hgvsp: ENSP00000243326.4:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.341A>G
  hgvsp: ENSP00000414615.2:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.341A>G
  hgvsp: ENSP00000415691.2:p.Asn114Ser
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6092
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn114Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-152273140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273140
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273140
    reference: chr 2
allele count: 31
allele frequency: 2.55417318942078e-4
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.346C>T
  hgvsp: ENSP00000243326.4:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.346C>T
  hgvsp: ENSP00000414615.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.346C>T
  hgvsp: ENSP00000390181.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.396C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.346C>T
  hgvsp: ENSP00000396865.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.346C>T
  hgvsp: ENSP00000416123.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.320C>T
  hgvsp: ENSP00000390486.2:p.Arg108Cys
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.346C>T
  hgvsp: ENSP00000415691.2:p.Arg116Cys
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3344
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46036
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg116Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-152273141-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273141
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273141
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.347G>T
  hgvsp: ENSP00000415691.2:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.347G>T
  hgvsp: ENSP00000243326.4:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.347G>T
  hgvsp: ENSP00000414615.2:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.397G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.321G>T
  hgvsp: ENSP00000390486.2:p.Arg108Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.347G>T
  hgvsp: ENSP00000416123.2:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.347G>T
  hgvsp: ENSP00000396865.2:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.347G>T
  hgvsp: ENSP00000390181.2:p.Arg116Leu
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg116Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-152273142-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273142
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273142
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.322T>A
  hgvsp: ENST00000414861.2:c.322T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.348T>A
  hgvsp: ENST00000453091.2:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.348T>A
  hgvsp: ENST00000430328.2:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.348T>A
  hgvsp: ENST00000444746.2:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.348T>A
  hgvsp: ENST00000433166.2:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.348T>A
  hgvsp: ENST00000428287.2:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.348T>A
  hgvsp: ENST00000243326.5:c.348T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.398T>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg116Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/2-152273144-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273144
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273144
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.350C>A
  hgvsp: ENSP00000243326.4:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.350C>A
  hgvsp: ENSP00000396865.2:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.350C>A
  hgvsp: ENSP00000416123.2:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.350C>A
  hgvsp: ENSP00000414615.2:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.400C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.350C>A
  hgvsp: ENSP00000390181.2:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.350C>A
  hgvsp: ENSP00000415691.2:p.Thr117Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.324C>A
  hgvsp: ENSP00000390486.2:p.Thr109Asn
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr117Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

2-152273145-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273145
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273145
    reference: chr 2
allele count: 18
allele frequency: 1.483019427554501e-4
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.351T>G
  hgvsp: ENST00000428287.2:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.351T>G
  hgvsp: ENST00000453091.2:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.401T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.351T>G
  hgvsp: ENST00000444746.2:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.351T>G
  hgvsp: ENST00000433166.2:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.351T>G
  hgvsp: ENST00000243326.5:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.351T>G
  hgvsp: ENST00000430328.2:c.351T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.325T>G
  hgvsp: ENST00000414861.2:c.325T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46041
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr117Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-152273146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273146
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273146
    reference: chr 2
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.402A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.352A>G
  hgvsp: ENSP00000415691.2:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.352A>G
  hgvsp: ENSP00000414615.2:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.352A>G
  hgvsp: ENSP00000396865.2:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.352A>G
  hgvsp: ENSP00000243326.4:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.352A>G
  hgvsp: ENSP00000390181.2:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.326A>G
  hgvsp: ENSP00000390486.2:p.Arg110Gly
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.352A>G
  hgvsp: ENSP00000416123.2:p.Arg118Gly
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg118Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

2-152273155-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273155
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273155
    reference: chr 2
allele count: 2
allele frequency: 1.647690761397901e-5
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.411T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.361T>C
  hgvsp: ENSP00000415691.2:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.361T>C
  hgvsp: ENSP00000243326.4:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.335T>C
  hgvsp: ENSP00000390486.2:p.Trp113Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.361T>C
  hgvsp: ENSP00000416123.2:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.361T>C
  hgvsp: ENSP00000390181.2:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.361T>C
  hgvsp: ENSP00000396865.2:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.361T>C
  hgvsp: ENSP00000414615.2:p.Trp121Arg
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46042
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp121Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-152273166-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273166
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273166
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.372T>G
  hgvsp: ENST00000433166.2:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.372T>G
  hgvsp: ENST00000430328.2:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.372T>G
  hgvsp: ENST00000243326.5:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.372T>G
  hgvsp: ENST00000428287.2:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.346T>G
  hgvsp: ENST00000414861.2:c.346T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.422T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.372T>G
  hgvsp: ENST00000444746.2:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.372T>G
  hgvsp: ENST00000453091.2:c.372T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser124Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-152273175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273175
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273175
    reference: chr 2
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.355A>G
  hgvsp: ENST00000414861.2:c.355A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.381A>G
  hgvsp: ENST00000444746.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.381A>G
  hgvsp: ENST00000433166.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.381A>G
  hgvsp: ENST00000430328.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.381A>G
  hgvsp: ENST00000243326.5:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.381A>G
  hgvsp: ENST00000428287.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.381A>G
  hgvsp: ENST00000453091.2:c.381A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.431A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr127Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

2-152273212-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273212
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273212
    reference: chr 2
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+10G>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+10G>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6345
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-152273221-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273221
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273221
    reference: chr 2
allele count: 4
allele frequency: 3.29614186594591e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+19T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+19T>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-152273225-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273225
    reference: chr 2
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+23C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+23C>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-152273227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273227
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273227
    reference: chr 2
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+25A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

2-152273228-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273228
    reference: chr 2
allele count: 52
allele frequency: 4.285337552742616e-4
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+26T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+26T>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 9.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD

2-152273228-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273228
    reference: chr 2
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+26T>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-152273236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273236
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273236
    reference: chr 2
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+34A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46048
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-152273246-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273246
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273246
    reference: chr 2
allele count: 3
allele frequency: 2.473288484368817e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+44T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+44T>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

2-152273251-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273251
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273251
    reference: chr 2
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.382+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.458+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.408+49G>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-152273271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273271
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273271
    reference: chr 2
allele count: 2
allele frequency: 1.649402916144356e-5
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-50A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-152273273-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273273
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273273
    reference: chr 2
allele count: 2
allele frequency: 1.649511744523621e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-48A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6063
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/2-152273276-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273276
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273276
    reference: chr 2
allele count: 14
allele frequency: 1.154658221166535e-4
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-45C>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-45C>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9386
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-152273281-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273281
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273281
    reference: chr 2
allele count: 4
allele frequency: 3.300221114814693e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-40C>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-152273282-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273282
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273282
    reference: chr 2
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-39A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-39A>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28919
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-152273292-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273292
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273292
    reference: chr 2
allele count: 2
allele frequency: 1.649865535958819e-5
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-29C>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-29C>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-152273301-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273301
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273301
    reference: chr 2
allele count: 26
allele frequency: 2.144506763444408e-4
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-20T>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

2-152273311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273311
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273311
    reference: chr 2
allele count: 6
allele frequency: 4.948780125699015e-5
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-10C>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-152273311-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273311
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273310
    reference: chr 2
allele count: 4
allele frequency: 3.29918675046601e-5
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-9delG
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: CG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-152273312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273312
    reference: chr 2
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-9G>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6010
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

2-152273312-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273312
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273312
    reference: chr 2
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.383-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.409-9G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.459-9G>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6010
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

2-152273328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273328
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273328
    reference: chr 2
allele count: 15
allele frequency: 1.236848181008608e-4
allele num: 121276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.416G>A
  hgvsp: ENSP00000415691.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.390G>A
  hgvsp: ENSP00000390486.2:p.Ser131Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.466G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.416G>A
  hgvsp: ENSP00000243326.4:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.416G>A
  hgvsp: ENSP00000416123.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.416G>A
  hgvsp: ENSP00000396865.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.416G>A
  hgvsp: ENSP00000390181.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.416G>A
  hgvsp: ENSP00000414615.2:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 28974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser139Asn
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-152273334-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273334
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273334
    reference: chr 2
allele count: 5
allele frequency: 4.122147473948028e-5
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.422T>C
  hgvsp: ENSP00000415691.2:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.422T>C
  hgvsp: ENSP00000416123.2:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.422T>C
  hgvsp: ENSP00000396865.2:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.422T>C
  hgvsp: ENSP00000390181.2:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.472T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.422T>C
  hgvsp: ENSP00000243326.4:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.422T>C
  hgvsp: ENSP00000414615.2:p.Ile141Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.396T>C
  hgvsp: ENSP00000390486.2:p.Ile133Thr
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28989
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile141Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

2-152273335-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273335
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273335
    reference: chr 2
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.397T>C
  hgvsp: ENST00000414861.2:c.397T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.473T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.423T>C
  hgvsp: ENST00000444746.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.423T>C
  hgvsp: ENST00000433166.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.423T>C
  hgvsp: ENST00000430328.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.423T>C
  hgvsp: ENST00000243326.5:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.423T>C
  hgvsp: ENST00000453091.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.423T>C
  hgvsp: ENST00000428287.2:c.423T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile141Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-152273341-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273341
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273341
    reference: chr 2
allele count: 3
allele frequency: 2.473166147301776e-5
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.479A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.403A>G
  hgvsp: ENST00000414861.2:c.403A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.429A>G
  hgvsp: ENST00000433166.2:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.429A>G
  hgvsp: ENST00000243326.5:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.429A>G
  hgvsp: ENST00000453091.2:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.429A>G
  hgvsp: ENST00000444746.2:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.429A>G
  hgvsp: ENST00000430328.2:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.429A>G
  hgvsp: ENST00000428287.2:c.429A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37908
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser143Ser
num of homozygotes: 1
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ

2-152273342-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273342
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273342
    reference: chr 2
allele count: 2
allele frequency: 1.64883180266781e-5
allele num: 121298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.430T>G
  hgvsp: ENSP00000416123.2:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.480T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.404T>G
  hgvsp: ENSP00000390486.2:p.Leu136Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.430T>G
  hgvsp: ENSP00000243326.4:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.430T>G
  hgvsp: ENSP00000390181.2:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.430T>G
  hgvsp: ENSP00000414615.2:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.430T>G
  hgvsp: ENSP00000396865.2:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.430T>G
  hgvsp: ENSP00000415691.2:p.Leu144Val
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu144Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

2-152273356-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273356
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273356
    reference: chr 2
allele count: 2
allele frequency: 1.648614339647526e-5
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.444T>G
  hgvsp: ENSP00000415691.2:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.494T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.418T>G
  hgvsp: ENSP00000390486.2:p.Phe140Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.444T>G
  hgvsp: ENSP00000396865.2:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.444T>G
  hgvsp: ENSP00000414615.2:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.444T>G
  hgvsp: ENSP00000416123.2:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.444T>G
  hgvsp: ENSP00000243326.4:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.444T>G
  hgvsp: ENSP00000390181.2:p.Phe148Leu
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe148Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-152273360-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273360
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273360
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.448A>C
  hgvsp: ENSP00000415691.2:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.498A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.422A>C
  hgvsp: ENSP00000390486.2:p.Lys142Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.448A>C
  hgvsp: ENSP00000243326.4:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.448A>C
  hgvsp: ENSP00000416123.2:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.448A>C
  hgvsp: ENSP00000414615.2:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.448A>C
  hgvsp: ENSP00000396865.2:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.448A>C
  hgvsp: ENSP00000390181.2:p.Lys150Gln
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys150Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-152273370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273370
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273370
    reference: chr 2
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.508C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.458C>T
  hgvsp: ENSP00000243326.4:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.458C>T
  hgvsp: ENSP00000390181.2:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.432C>T
  hgvsp: ENSP00000390486.2:p.Thr145Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.458C>T
  hgvsp: ENSP00000415691.2:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.458C>T
  hgvsp: ENSP00000396865.2:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.458C>T
  hgvsp: ENSP00000416123.2:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.458C>T
  hgvsp: ENSP00000414615.2:p.Thr153Met
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37975
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr153Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

2-152273371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273371
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273371
    reference: chr 2
allele count: 27
allele frequency: 2.225996339472686e-4
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.459G>A
  hgvsp: ENST00000430328.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.459G>A
  hgvsp: ENST00000243326.5:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.433G>A
  hgvsp: ENST00000414861.2:c.433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.459G>A
  hgvsp: ENST00000444746.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.459G>A
  hgvsp: ENST00000433166.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.459G>A
  hgvsp: ENST00000428287.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.509G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.459G>A
  hgvsp: ENST00000453091.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr153Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-152273372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273372
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273372
    reference: chr 2
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.434C>T
  hgvsp: ENSP00000390486.2:p.His146Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.460C>T
  hgvsp: ENSP00000243326.4:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.510C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.460C>T
  hgvsp: ENSP00000416123.2:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.460C>T
  hgvsp: ENSP00000415691.2:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.460C>T
  hgvsp: ENSP00000414615.2:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.460C>T
  hgvsp: ENSP00000396865.2:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.460C>T
  hgvsp: ENSP00000390181.2:p.His154Tyr
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His154Tyr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

2-152273373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273373
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273373
    reference: chr 2
allele count: 2
allele frequency: 1.648940555692967e-5
allele num: 121290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.461A>G
  hgvsp: ENSP00000390181.2:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.461A>G
  hgvsp: ENSP00000243326.4:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.461A>G
  hgvsp: ENSP00000415691.2:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.511A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.461A>G
  hgvsp: ENSP00000416123.2:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.461A>G
  hgvsp: ENSP00000396865.2:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.461A>G
  hgvsp: ENSP00000414615.2:p.His154Arg
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.435A>G
  hgvsp: ENSP00000390486.2:p.His146Arg
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His154Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

2-152273375-TCTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273375
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273372
    reference: chr 2
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.467_469delCTG
  hgvsp: ENSP00000416123.2:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.467_469delCTG
  hgvsp: ENSP00000415691.2:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.441_443delCTG
  hgvsp: ENSP00000390486.2:p.Ala148del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.467_469delCTG
  hgvsp: ENSP00000390181.2:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.517_519delCTG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.467_469delCTG
  hgvsp: ENSP00000396865.2:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.467_469delCTG
  hgvsp: ENSP00000243326.4:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.467_469delCTG
  hgvsp: ENSP00000414615.2:p.Ala156del
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala156del
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: TCTG
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

2-152273377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273377
    reference: chr 2
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.465T>C
  hgvsp: ENST00000430328.2:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.465T>C
  hgvsp: ENST00000428287.2:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.465T>C
  hgvsp: ENST00000433166.2:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.465T>C
  hgvsp: ENST00000243326.5:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.515T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.465T>C
  hgvsp: ENST00000444746.2:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.439T>C
  hgvsp: ENST00000414861.2:c.439T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.465T>C
  hgvsp: ENST00000453091.2:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser155Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

2-152273378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273378
    reference: chr 2
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.466G>A
  hgvsp: ENSP00000243326.4:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.466G>A
  hgvsp: ENSP00000416123.2:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.466G>A
  hgvsp: ENSP00000396865.2:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.466G>A
  hgvsp: ENSP00000390181.2:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.466G>A
  hgvsp: ENSP00000415691.2:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.516G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.466G>A
  hgvsp: ENSP00000414615.2:p.Ala156Thr
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.440G>A
  hgvsp: ENSP00000390486.2:p.Ala148Thr
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5948
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala156Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-152273380-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273380
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273380
    reference: chr 2
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.468T>C
  hgvsp: ENST00000453091.2:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.468T>C
  hgvsp: ENST00000444746.2:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.468T>C
  hgvsp: ENST00000243326.5:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.468T>C
  hgvsp: ENST00000428287.2:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.468T>C
  hgvsp: ENST00000430328.2:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.518T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.468T>C
  hgvsp: ENST00000433166.2:c.468T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.442T>C
  hgvsp: ENST00000414861.2:c.442T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37956
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala156Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-152273383-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273383
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273383
    reference: chr 2
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.471T>G
  hgvsp: ENST00000444746.2:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.471T>G
  hgvsp: ENST00000453091.2:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.471T>G
  hgvsp: ENST00000243326.5:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.471T>G
  hgvsp: ENST00000430328.2:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.471T>G
  hgvsp: ENST00000433166.2:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.521T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.471T>G
  hgvsp: ENST00000428287.2:c.471T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.445T>G
  hgvsp: ENST00000414861.2:c.445T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val157Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-152273410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273410
    reference: chr 2
allele count: 1
allele frequency: 8.270204108637402e-6
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.472C>T
  hgvsp: ENST00000414861.2:c.472C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.498C>T
  hgvsp: ENST00000433166.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.548C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.498C>T
  hgvsp: ENST00000444746.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.498C>T
  hgvsp: ENST00000430328.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.498C>T
  hgvsp: ENST00000453091.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.498C>T
  hgvsp: ENST00000243326.5:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.498C>T
  hgvsp: ENST00000428287.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3281
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile166Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-152273415-G-GGTAT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273415
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273419
    reference: chr 2
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: GGTAT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+2_477+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+2_553+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+2_503+5dupTATG
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-152273425-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273425
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273425
    reference: chr 2
allele count: 1
allele frequency: 8.333750020834376e-6
allele num: 119994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+10T>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5910
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-152273428-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273428
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273428
    reference: chr 2
allele count: 4
allele frequency: 3.340571237681643e-5
allele num: 119740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+13A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+13A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26714
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

2-152273428-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273428
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273428
    reference: chr 2
allele count: 1
allele frequency: 8.351428094204109e-6
allele num: 119740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+13A>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+13A>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-152273433-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273433
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273433
    reference: chr 2
allele count: 2
allele frequency: 1.677176975714477e-5
allele num: 119248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+18G>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+18G>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6411
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-152273438-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273438
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273438
    reference: chr 2
allele count: 1
allele frequency: 8.420768984623676e-6
allele num: 118754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+23A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+23A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10907
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-152273441-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273441
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273441
    reference: chr 2
allele count: 1
allele frequency: 8.435686327439601e-6
allele num: 118544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+26T>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-152273445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273445
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273445
    reference: chr 2
allele count: 1
allele frequency: 8.457947087083023e-6
allele num: 118232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+30G>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

2-152273445-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273445
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273444
    reference: chr 2
allele count: 8
allele frequency: 6.766357669666418e-5
allele num: 118232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+32delA
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+32delA
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6019
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5898
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: GA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

2-152273448-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273448
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273448
    reference: chr 2
allele count: 5
allele frequency: 4.238581262079956e-5
allele num: 117964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+33T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+33T>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

2-152273449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273449
    reference: chr 2
allele count: 1
allele frequency: 8.486370888353305e-6
allele num: 117836
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+34A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16596
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6815
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

2-152273454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273454
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273454
    reference: chr 2
allele count: 4
allele frequency: 3.411863047817261e-5
allele num: 117238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+39T>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13199
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13664
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-152273456-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152273456
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152273456
    reference: chr 2
allele count: 1
allele frequency: 8.567658801555887e-6
allele num: 116718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.553+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.503+41A>C
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.477+41A>C
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11674
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14150
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5887
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-152276664-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276664
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276664
    reference: chr 2
allele count: 1
allele frequency: 1.064645260199302e-5
allele num: 93928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-40A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-40A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5045
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-152276669-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276669
    reference: chr 2
allele count: 5
allele frequency: 5.272704264563209e-5
allele num: 94828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-35G>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18399
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14877
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11905
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-152276672-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276672
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276672
    reference: chr 2
allele count: 1
allele frequency: 1.043144454644079e-5
allele num: 95864
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-32A>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-32A>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4641
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

2-152276673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276673
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276673
    reference: chr 2
allele count: 1
allele frequency: 1.042861612264053e-5
allele num: 95890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-31C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-31C>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum

2-152276674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276674
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276674
    reference: chr 2
allele count: 2
allele frequency: 2.070822116380203e-5
allele num: 96580
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-30G>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20626
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22783
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

2-152276680-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276680
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276680
    reference: chr 2
allele count: 1
allele frequency: 9.996401295533608e-6
allele num: 100036
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-24T>A
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-24T>A
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS

2-152276687-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276687
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276687
    reference: chr 2
allele count: 42
allele frequency: 4.034814686725459e-4
allele num: 104094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-17T>G
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 32645
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6943
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 9.75e1
  variant carriers: 43
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-152276693-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 152276693
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 152276693
    reference: chr 2
allele count: 3
allele frequency: 2.78329282096005e-5
allele num: 107786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000416123
  ensembl transcript: ENST00000430328
  gene symbol: RIF1
  hgvsc: ENST00000430328.2:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl transcript: ENST00000494333
  gene symbol: RIF1
  hgvsc: ENST00000494333.1:n.554-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000414615
  ensembl transcript: ENST00000453091
  gene symbol: RIF1
  hgvsc: ENST00000453091.2:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000243326
  ensembl transcript: ENST00000243326
  gene symbol: RIF1
  hgvsc: ENST00000243326.5:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000396865
  ensembl transcript: ENST00000433166
  gene symbol: RIF1
  hgvsc: ENST00000433166.2:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390486
  ensembl transcript: ENST00000414861
  gene symbol: RIF1
  hgvsc: ENST00000414861.2:c.478-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000415691
  ensembl transcript: ENST00000428287
  gene symbol: RIF1
  hgvsc: ENST00000428287.2:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000080345
  ensembl protein: ENSP00000390181
  ensembl transcript: ENST00000444746
  gene symbol: RIF1
  hgvsc: ENST00000444746.2:c.504-11C>T
  variant of: http://identifiers.org/hgnc/23207
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36427
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6400
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.936483346243222e-4
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.178594e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.717e0

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1822
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 971
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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South Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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FS
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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Latino
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQ
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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African
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Other
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East Asian
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Latino
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11578
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East Asian
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Other
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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DP
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Other
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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FS
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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South Asian
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East Asian
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European (Non-Finnish)
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QD
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VQSLOD
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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South Asian
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Other
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African
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MQRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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African
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FS
type: SiteQuality
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66730
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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European (Non-Finnish)
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allele num: 66730
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East Asian
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Latino
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

South Asian
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European (Finnish)
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num of homozygotes: 0

Other
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DP
type: SiteQuality
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VQSLOD
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QD
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MQ
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ClippingRankSum
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
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Other
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South Asian
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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African
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Latino
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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MQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 1.93e0

MQRankSum
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BaseQRankSum
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SIO_000300: 1.072e1

InbreedingCoeff
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SIO_000300: 1.0e-3

VQSLOD
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SIO_000300: 1.92e0

ReadPosRankSum
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SIO_000300: 9.0e-2

QD
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MQ
type: SiteQuality
SIO_000300: 5.987e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

DP
type: SiteQuality
SIO_000300: 3.187436e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -2.687e0

FS
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SIO_000300: 0.0e0

QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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SIO_000300: -2.604e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -4.63e-1

DP
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MQRankSum
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FS
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.6e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e0

FS
type: SiteQuality
SIO_000300: 1.696e0

MQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.695e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.098457e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.016e0

VQSLOD
type: SiteQuality
SIO_000300: -1.801e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 9.045999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.48e0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

South Asian
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allele count: 14
allele frequency: 8.48073661255149e-4
allele num: 16508
num of homozygotes: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

InbreedingCoeff
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SIO_000300: 1.89e-2

ClippingRankSum
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SIO_000300: 1.35e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.239e0

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.718172983479106e-5
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
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allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9351
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.298350824587706e-4
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

QD
type: SiteQuality
SIO_000300: 1.583e1

FS
type: SiteQuality
SIO_000300: 1.739e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 2.095923e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 529
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
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GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.496926260233305e-5
allele num: 66694
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.46e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

DP
type: SiteQuality
SIO_000300: 2.0942e6

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9349
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variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.997541008186643e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

DP
type: SiteQuality
SIO_000300: 2.0942e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.101e0

QD
type: SiteQuality
SIO_000300: 1.46e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.093678e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.484e1

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 9352
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
all individuals: 2212
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

QD
type: SiteQuality
SIO_000300: 1.484e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

DP
type: SiteQuality
SIO_000300: 2.093678e6

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.36e-1

GenotypeQuality
all individuals: 526
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variant carriers: 0

GenotypeQuality
all individuals: 37827
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2408
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.48073661255149e-4
allele num: 16508
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.45e-2

FS
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.76e0

QD
type: SiteQuality
SIO_000300: 1.292e1

DP
type: SiteQuality
SIO_000300: 2.093851e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9364
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 1.1432e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.362e1

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.092914e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.05e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 2.092768e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.513e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 2406
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.078e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

DP
type: SiteQuality
SIO_000300: 2.092714e6

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.885e0

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 9360
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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Latino
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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ClippingRankSum
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MQ
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FS
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VQSLOD
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QD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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Latino
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African
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East Asian
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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South Asian
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Latino
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East Asian
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European (Non-Finnish)
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African
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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African
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Other
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East Asian
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South Asian
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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African
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South Asian
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Latino
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European (Non-Finnish)
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QD
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FS
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Other
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BaseQRankSum
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MQ
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VQSLOD
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FS
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Latino
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European (Non-Finnish)
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South Asian
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QD
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MQRankSum
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FS
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SIO_000300: 1.319e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 2.090391e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.133e1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.090337e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

FS
type: SiteQuality
SIO_000300: 3.741e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.206e1

ReadPosRankSum
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SIO_000300: 1.14e0

VQSLOD
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DP
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.681e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.226e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

VQSLOD
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SIO_000300: -2.265e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.089476e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.804e0

ClippingRankSum
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SIO_000300: 2.15e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.078492e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 9.06e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.057e0

DP
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InbreedingCoeff
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VQSLOD
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QD
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MQ
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65852
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East Asian
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allele count: 0
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African
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allele frequency: 9.710623422023694e-5
allele num: 10298
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Latino
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allele num: 11462
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 2.455192732629511e-4
allele num: 16292
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6592
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65684
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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SIO_000300: 6.929999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16292
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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Other
type: Population
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European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

DP
type: SiteQuality
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.279e0

QD
type: SiteQuality
SIO_000300: 1.598e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.781e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.072e0

DP
type: SiteQuality
SIO_000300: 1.972897e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-2

GenotypeQuality
all individuals: 5892
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.803e-1

QD
type: SiteQuality
SIO_000300: 1.553e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 1.905992e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.555e0

FS
type: SiteQuality
SIO_000300: 3.148e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
all individuals: 1678
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5893
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.824567596187787e-5
allele num: 11332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.724e0

DP
type: SiteQuality
SIO_000300: 1.872581e6

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.409e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.197322756569162e-5
allele num: 16136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.377e1

FS
type: SiteQuality
SIO_000300: 1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.834029e6

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3815
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 698
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6596
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variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.957858205255329e-4
allele num: 16136
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

QD
type: SiteQuality
SIO_000300: 1.377e1

FS
type: SiteQuality
SIO_000300: 1.252e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.834029e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.67e0

GenotypeQuality
all individuals: 1814
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6764
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5894
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variant carriers: 5

GenotypeQuality
all individuals: 5973
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.524855138761818e-4
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.649144557401438e-5
allele num: 64528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.9e0

QD
type: SiteQuality
SIO_000300: 1.595e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

DP
type: SiteQuality
SIO_000300: 1.781289e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64450
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.209637357178341e-5
allele num: 16104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.752e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 1.766092e6

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.838e1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.243171531137818e-5
allele num: 64070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.224e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

FS
type: SiteQuality
SIO_000300: 6.538e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.70961e6

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 692
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GenotypeQuality
all individuals: 3295
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.941344778254649e-5
allele num: 11184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15982
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63740
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.4e-2

DP
type: SiteQuality
SIO_000300: 1.680448e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

QD
type: SiteQuality
SIO_000300: 1.661e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2776
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 330
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GenotypeQuality
all individuals: 3088
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.087665869045029e-4
allele num: 9194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.97715e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.826e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.144e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.775e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.502013657853266e-4
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.911095822344532e-5
allele num: 52326
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.030954e6

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.027e0

QD
type: SiteQuality
SIO_000300: 1.169e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 464
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8722
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.890502117362372e-5
allele num: 52896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 8.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

DP
type: SiteQuality
SIO_000300: 1.06181e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.064282673478076e-4
allele num: 9396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.074075e6

VQSLOD
type: SiteQuality
SIO_000300: -3.685e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.246e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.84e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.517887563884156e-5
allele num: 11740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.876876876876877e-5
allele num: 53280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.09613e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e0

QD
type: SiteQuality
SIO_000300: 1.374e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 827
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.440507058484587e-4
allele num: 6942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55160
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

DP
type: SiteQuality
SIO_000300: 1.169454e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 42
allele frequency: 7.325496215160288e-4
allele num: 57334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12932
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.88e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

DP
type: SiteQuality
SIO_000300: 1.244277e6