1-144868113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868113
    reference: chr 1
allele count: 33
allele frequency: 2.718241874104216e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5581G>A
  hgvsp: ENSP00000435654.1:p.Asp1861Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5734G>A
  hgvsp: ENSP00000358366.4:p.Asp1912Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5326G>A
  hgvsp: ENSP00000358363.4:p.Asp1776Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3789G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.484G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.5008G>A
  hgvsp: ENSP00000327209.9:p.Asp1670Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2760G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5326G>A
  hgvsp: ENSP00000358360.3:p.Asp1776Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10385G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25861
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3794
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp1776Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-144868114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868114
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868114
    reference: chr 1
allele count: 11
allele frequency: 9.060358460727464e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5325C>T
  hgvsp: ENST00000369354.3:c.5325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.5007C>T
  hgvsp: ENST00000313382.9:c.5007C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3790C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5580C>T
  hgvsp: ENST00000530740.1:c.5580C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.483C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5325C>T
  hgvsp: ENST00000369356.4:c.5325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5733C>T
  hgvsp: ENST00000369359.4:c.5733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10386C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2759C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1775Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-144868114-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868114
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868114
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5325C>A
  hgvsp: ENST00000369354.3:c.5325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.483C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.5007C>A
  hgvsp: ENST00000313382.9:c.5007C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10386C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3790C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5580C>A
  hgvsp: ENST00000530740.1:c.5580C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5325C>A
  hgvsp: ENST00000369356.4:c.5325C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2759C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5733C>A
  hgvsp: ENST00000369359.4:c.5733C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala1775Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

1-144868120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868120
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868120
    reference: chr 1
allele count: 29
allele frequency: 2.388758010576432e-4
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5319G>A
  hgvsp: ENST00000369354.3:c.5319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5319G>A
  hgvsp: ENST00000369356.4:c.5319G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5574G>A
  hgvsp: ENST00000530740.1:c.5574G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2753G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3796G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10392G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.5001G>A
  hgvsp: ENST00000313382.9:c.5001G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5727G>A
  hgvsp: ENST00000369359.4:c.5727G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.477G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25842
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56206
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu1773Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-144868125-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868125
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868125
    reference: chr 1
allele count: 8
allele frequency: 6.589568712727751e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3801G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5314G>A
  hgvsp: ENSP00000358363.4:p.Asp1772Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10397G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.472G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4996G>A
  hgvsp: ENSP00000327209.9:p.Asp1666Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2748G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5314G>A
  hgvsp: ENSP00000358360.3:p.Asp1772Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5569G>A
  hgvsp: ENSP00000435654.1:p.Asp1857Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5722G>A
  hgvsp: ENSP00000358366.4:p.Asp1908Asn
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3811
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25831
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp1772Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-144868126-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868126
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868126
    reference: chr 1
allele count: 16
allele frequency: 1.317935454111135e-4
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.471C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5313C>T
  hgvsp: ENST00000369354.3:c.5313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5721C>T
  hgvsp: ENST00000369359.4:c.5721C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2747C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5568C>T
  hgvsp: ENST00000530740.1:c.5568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4995C>T
  hgvsp: ENST00000313382.9:c.4995C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5313C>T
  hgvsp: ENST00000369356.4:c.5313C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3802C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10398C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25829
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn1771Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-144868131-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868131
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868131
    reference: chr 1
allele count: 91
allele frequency: 7.495510930267037e-4
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4990A>C
  hgvsp: ENSP00000327209.9:p.Ser1664Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2742A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.466A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3807A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5716A>C
  hgvsp: ENSP00000358366.4:p.Ser1906Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5308A>C
  hgvsp: ENSP00000358363.4:p.Ser1770Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10403A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5308A>C
  hgvsp: ENSP00000358360.3:p.Ser1770Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5563A>C
  hgvsp: ENSP00000435654.1:p.Ser1855Arg
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25846
  bin: 9.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56220
  bin: 9.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser1770Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-144868140-TAGCTGTGGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868140
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868131
    reference: chr 1
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsp: ENSP00000435654.1:p.Ser1849_Ala1851del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsp: ENSP00000358366.4:p.Ser1900_Ala1902del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsp: ENSP00000358360.3:p.Ser1764_Ala1766del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsp: ENSP00000327209.9:p.Ser1658_Ala1660del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsp: ENSP00000358363.4:p.Ser1764_Ala1766del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.448_456delTCCACAGCT
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25807
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser1764_Ala1766del
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: TAGCTGTGGA
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-144868143-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868143
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868143
    reference: chr 1
allele count: 11
allele frequency: 9.060806247014052e-5
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5296G>A
  hgvsp: ENSP00000358360.3:p.Ala1766Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10415G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5704G>A
  hgvsp: ENSP00000358366.4:p.Ala1902Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5296G>A
  hgvsp: ENSP00000358363.4:p.Ala1766Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.454G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3819G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4978G>A
  hgvsp: ENSP00000327209.9:p.Ala1660Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5551G>A
  hgvsp: ENSP00000435654.1:p.Ala1851Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2730G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25807
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1766Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

1-144868151-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868151
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868151
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4970C>T
  hgvsp: ENSP00000327209.9:p.Ala1657Val
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5288C>T
  hgvsp: ENSP00000358363.4:p.Ala1763Val
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10423C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2722C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3827C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.446C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5288C>T
  hgvsp: ENSP00000358360.3:p.Ala1763Val
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5543C>T
  hgvsp: ENSP00000435654.1:p.Ala1848Val
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5696C>T
  hgvsp: ENSP00000358366.4:p.Ala1899Val
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1763Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

1-144868155-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868155
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868155
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10427C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.442C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5284C>T
  hgvsp: ENSP00000358363.4:p.Pro1762Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2718C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5692C>T
  hgvsp: ENSP00000358366.4:p.Pro1898Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5539C>T
  hgvsp: ENSP00000435654.1:p.Pro1847Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4966C>T
  hgvsp: ENSP00000327209.9:p.Pro1656Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5284C>T
  hgvsp: ENSP00000358360.3:p.Pro1762Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3831C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro1762Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-144868155-GAGGAAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868155
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868149
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5278_5283delGTTCCT
  hgvsp: ENSP00000358363.4:p.Val1760_Pro1761del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5686_5691delGTTCCT
  hgvsp: ENSP00000358366.4:p.Val1896_Pro1897del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.436_441delGTTCCT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4960_4965delGTTCCT
  hgvsp: ENSP00000327209.9:p.Val1654_Pro1655del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5278_5283delGTTCCT
  hgvsp: ENSP00000358360.3:p.Val1760_Pro1761del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5533_5538delGTTCCT
  hgvsp: ENSP00000435654.1:p.Val1845_Pro1846del
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2712_2717delGTTCCT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25803
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1760_Pro1761del
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: GAGGAAC
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-144868157-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868157
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868157
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5537C>T
  hgvsp: ENSP00000435654.1:p.Pro1846Leu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5282C>T
  hgvsp: ENSP00000358363.4:p.Pro1761Leu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5282C>T
  hgvsp: ENSP00000358360.3:p.Pro1761Leu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3833C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.440C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10429C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4964C>T
  hgvsp: ENSP00000327209.9:p.Pro1655Leu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2716C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5690C>T
  hgvsp: ENSP00000358366.4:p.Pro1897Leu
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25802
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro1761Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-144868163-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868163
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868163
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10435C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5276C>G
  hgvsp: ENSP00000358360.3:p.Thr1759Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5276C>G
  hgvsp: ENSP00000358363.4:p.Thr1759Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3839C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2710C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5531C>G
  hgvsp: ENSP00000435654.1:p.Thr1844Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4958C>G
  hgvsp: ENSP00000327209.9:p.Thr1653Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5684C>G
  hgvsp: ENSP00000358366.4:p.Thr1895Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.434C>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25801
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr1759Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-144868170-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868170
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868170
    reference: chr 1
allele count: 60703
allele frequency: 5.0e-1
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5524G>A
  hgvsp: ENSP00000435654.1:p.Ala1842Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.427G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5677G>A
  hgvsp: ENSP00000358366.4:p.Ala1893Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3846G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2703G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4951G>A
  hgvsp: ENSP00000327209.9:p.Ala1651Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5269G>A
  hgvsp: ENSP00000358363.4:p.Ala1757Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5269G>A
  hgvsp: ENSP00000358360.3:p.Ala1757Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10442G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 7.25e1
  variant carriers: 3919
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.25e1
  variant carriers: 1339
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 5.75e1
  variant carriers: 2047
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 8.75e1
  variant carriers: 4608
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.75e1
  variant carriers: 170
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 803
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2641
  bin: 6.25e1
  variant carriers: 2641
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 581
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 9.25e1
  variant carriers: 4302
genotype depth: GenotypeDepth
  all individuals: 27362
  bin: 9.75e1
  variant carriers: 27362
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.75e1
  variant carriers: 4307
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 3353
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.25e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 8.25e1
  variant carriers: 4596
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala1757Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-144868171-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868171
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868171
    reference: chr 1
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4950T>C
  hgvsp: ENST00000313382.9:c.4950T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5676T>C
  hgvsp: ENST00000369359.4:c.5676T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5268T>C
  hgvsp: ENST00000369354.3:c.5268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5523T>C
  hgvsp: ENST00000530740.1:c.5523T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10443T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5268T>C
  hgvsp: ENST00000369356.4:c.5268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3847T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2702T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.426T>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 6.25e1
  variant carriers: 0
hgvs: c.5268T>C
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

1-144868172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868172
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868172
    reference: chr 1
allele count: 6
allele frequency: 4.94486475794887e-5
allele num: 121338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267G>A
  hgvsp: ENSP00000358363.4:p.Ser1756Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522G>A
  hgvsp: ENSP00000435654.1:p.Ser1841Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3848G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675G>A
  hgvsp: ENSP00000358366.4:p.Ser1892Asn
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949G>A
  hgvsp: ENSP00000327209.9:p.Gly1650Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10444G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267G>A
  hgvsp: ENSP00000358360.3:p.Ser1756Asn
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser1756Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-144868174-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868174
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868174
    reference: chr 1
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3850A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-2A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10446A>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: c.5267-2A>G
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

1-144868176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868176
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868176
    reference: chr 1
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3852C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10448C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-4C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-4C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
hgvs: c.5267-4C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

1-144868177-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868177
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868177
    reference: chr 1
allele count: 3
allele frequency: 2.472595400972554e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3853C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10449C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-5C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-5C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 6.25e1
  variant carriers: 0
hgvs: c.5267-5C>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-144871752-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871752
    reference: chr 1
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5210T>A
  hgvsp: ENSP00000358360.3:p.Val1737Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7428T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2125T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2644T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5465T>A
  hgvsp: ENSP00000435654.1:p.Val1822Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5210T>A
  hgvsp: ENSP00000358363.4:p.Val1737Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2125T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14024T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5618T>A
  hgvsp: ENSP00000358366.4:p.Val1873Asp
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49909
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59563
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val1737Asp
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-144868183-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868183
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868183
    reference: chr 1
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10455T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3859T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-11T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-11T>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 56
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genotype quality: GenotypeQuality
  all individuals: 23
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num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS

1-144868189-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868189
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868189
    reference: chr 1
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3865T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
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  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-17T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10461T>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-144868197-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868197
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868197
    reference: chr 1
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3873C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10469C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-25C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000178104
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-25C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 104
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num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

1-144868201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868201
    reference: chr 1
allele count: 1
allele frequency: 8.246062505153789e-6
allele num: 121270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3877G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
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  hgvsc: ENST00000479369.2:n.425-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
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  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10473G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-29G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 924
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num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/1-144868204-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868204
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868204
    reference: chr 1
allele count: 60641
allele frequency: 4.999917548893506e-1
allele num: 121284
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10476T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-32T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3880T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-32T>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 4.75e1
  variant carriers: 6699
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 5462
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.25e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 8.25e1
  variant carriers: 2080
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 2541
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 3.75e1
  variant carriers: 4250
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 5.75e1
  variant carriers: 6351
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 8.75e1
  variant carriers: 1661
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.75e1
  variant carriers: 1220
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 6.75e1
  variant carriers: 4221
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.25e1
  variant carriers: 1368
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 6.25e1
  variant carriers: 5379
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 6841
  bin: 5.25e1
  variant carriers: 6841
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 7.25e1
  variant carriers: 3215
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.75e1
  variant carriers: 2532
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 4.25e1
  variant carriers: 5813
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

1-144868209-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868209
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868208
    reference: chr 1
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10482delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3886delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-38delA
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-38delA
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6853
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28763
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7411
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: GT
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

1-144868210-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868210
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868210
    reference: chr 1
allele count: 4
allele frequency: 3.304801877127466e-5
allele num: 121036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3886A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10482A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-38A>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-38A>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9179
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28760
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-144868214-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868214
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868214
    reference: chr 1
allele count: 28
allele frequency: 2.31404958677686e-4
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10486T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3890T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-42T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-42T>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9161
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-144868215-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868215
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868215
    reference: chr 1
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3891C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10487C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-43C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-43C>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7721
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

1-144868218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868218
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868218
    reference: chr 1
allele count: 1
allele frequency: 8.266512358435975e-6
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10490C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3894C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-46C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-46C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

1-144868219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868219
    reference: chr 1
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10491C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-47C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3895C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-47C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9035
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4668
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

1-144868223-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144868223
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144868223
    reference: chr 1
allele count: 4
allele frequency: 3.309723969020984e-5
allele num: 120856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4949-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5267-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5522-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.425-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5675-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-3899C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2701-51C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-10495C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5267-51C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7681
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6091
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28725
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-144871645-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871643
    reference: chr 1
allele count: 6
allele frequency: 5.118056503343797e-5
allele num: 117232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2230_4948+2231delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2230_424+2231delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+49_5266+50delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13919_91-13918delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+49_5521+50delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7323_294-7322delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+49_5266+50delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+49_5674+50delGT
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+49_2700+50delGT
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: AAC
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

1-144871649-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871649
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871649
    reference: chr 1
allele count: 1
allele frequency: 8.537668192063383e-6
allele num: 117128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+47G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+47G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+47G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13921G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2228G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7325G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+47G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2228G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+47G>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-144871650-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871650
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871651
    reference: chr 1
allele count: 2
allele frequency: 1.705320600272851e-5
allele num: 117280
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+45dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+45dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7327dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2226dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+45dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13923dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2226dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+45dupC
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+45dupC
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

1-144871652-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871652
    reference: chr 1
allele count: 3
allele frequency: 2.558242657843572e-5
allele num: 117268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+44A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13924A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+44A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2225A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7328A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+44A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2225A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+44A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+44A>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

1-144871656-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871656
    reference: chr 1
allele count: 1
allele frequency: 8.524567804412315e-6
allele num: 117308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2221C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+40C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+40C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+40C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13928C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+40C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7332C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+40C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2221C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 327
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genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-144871660-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871660
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871660
    reference: chr 1
allele count: 2
allele frequency: 1.701664227614607e-5
allele num: 117532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+36A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2217A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+36A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7336A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13932A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+36A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+36A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+36A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2217A>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 155
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
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genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
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genotype depth: GenotypeDepth
  all individuals: 4967
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 2683
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 601
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genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 429
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-144871667-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871667
    reference: chr 1
allele count: 1
allele frequency: 8.498342823149486e-6
allele num: 117670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+29G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+29G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+29G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2210G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7343G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13939G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+29G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2210G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+29G>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2903
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-144871667-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871667
    reference: chr 1
allele count: 4
allele frequency: 3.399337129259794e-5
allele num: 117670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13939G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
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  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2210G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+29G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7343G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2210G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
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genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 95
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-144871668-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871668
    reference: chr 1
allele count: 6
allele frequency: 5.093984004890225e-5
allele num: 117786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+28C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+28C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13940C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+28C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2209C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+28C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
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  ensembl gene: ENSG00000178104
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  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7344C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+28C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
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  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2209C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

1-144871668-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871668
    reference: chr 1
allele count: 4
allele frequency: 3.395989336593483e-5
allele num: 117786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2209C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+28C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+28C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
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  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+28C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
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  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13940C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
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  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+28C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7344C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000178104
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  hgvsc: ENST00000369359.4:c.5674+28C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
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  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2209C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-144871685-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871685
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871685
    reference: chr 1
allele count: 2
allele frequency: 1.67549091883922e-5
allele num: 119368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7361C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+11C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+11C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
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  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+11C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000178104
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  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+11C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl protein: ENSP00000436694
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  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13957C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
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  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+11C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
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  hgvsc: ENST00000479369.2:n.424+2192C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  hgvsc: ENST00000313382.9:c.4948+2192C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4859
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49947
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

1-144871690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871690
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871690
    reference: chr 1
allele count: 1
allele frequency: 8.348220994106157e-6
allele num: 119786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2187C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+6C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+6C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+6C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+6C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2187C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7366C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13962C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+6C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: c.5266+6C>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

1-144871690-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871690
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871690
    reference: chr 1
allele count: 1
allele frequency: 8.348220994106157e-6
allele num: 119786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7366C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+6C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+6C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2187C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2187C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+6C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+6C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+6C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13962C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: c.5266+6C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-144871691-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871691
    reference: chr 1
allele count: 1
allele frequency: 8.34432002136146e-6
allele num: 119842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13963G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7367G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2700+5G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5674+5G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5521+5G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2186G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5266+5G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2186G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5266+5G>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
hgvs: c.5266+5G>C
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

1-144871706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871706
    reference: chr 1
allele count: 1
allele frequency: 8.270477702792114e-6
allele num: 120912
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5256G>A
  hgvsp: ENST00000369356.4:c.5256G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13978G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5664G>A
  hgvsp: ENST00000369359.4:c.5664G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5256G>A
  hgvsp: ENST00000369354.3:c.5256G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2690G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2171G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5511G>A
  hgvsp: ENST00000530740.1:c.5511G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2171G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7382G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1752Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-144871708-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871708
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871708
    reference: chr 1
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5254C>G
  hgvsp: ENSP00000358363.4:p.Gln1752Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2169C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7384C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5662C>G
  hgvsp: ENSP00000358366.4:p.Gln1888Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2688C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5254C>G
  hgvsp: ENSP00000358360.3:p.Gln1752Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13980C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5509C>G
  hgvsp: ENSP00000435654.1:p.Gln1837Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2169C>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1752Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

1-144871713-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871713
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871713
    reference: chr 1
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7389A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5249A>G
  hgvsp: ENSP00000358363.4:p.Gln1750Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13985A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2164A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5657A>G
  hgvsp: ENSP00000358366.4:p.Gln1886Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5249A>G
  hgvsp: ENSP00000358360.3:p.Gln1750Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2683A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2164A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5504A>G
  hgvsp: ENSP00000435654.1:p.Gln1835Arg
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln1750Arg
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

1-144871714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871714
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871714
    reference: chr 1
allele count: 2
allele frequency: 1.650873311982039e-5
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2682C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2163C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13986C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5248C>T
  hgvsp: ENSP00000358363.4:p.Gln1750Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5503C>T
  hgvsp: ENSP00000435654.1:p.Gln1835Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2163C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5656C>T
  hgvsp: ENSP00000358366.4:p.Gln1886Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5248C>T
  hgvsp: ENSP00000358360.3:p.Gln1750Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7390C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2925
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln1750Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-144871716-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871716
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871716
    reference: chr 1
allele count: 11
allele frequency: 9.077555331825909e-5
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2161T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2161T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5654T>G
  hgvsp: ENSP00000358366.4:p.Leu1885Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5246T>G
  hgvsp: ENSP00000358363.4:p.Leu1749Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5246T>G
  hgvsp: ENSP00000358360.3:p.Leu1749Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5501T>G
  hgvsp: ENSP00000435654.1:p.Leu1834Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2680T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7392T>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13988T>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu1749Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-144871721-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871721
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871721
    reference: chr 1
allele count: 2
allele frequency: 1.649484536082474e-5
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5241G>C
  hgvsp: ENSP00000358360.3:p.Gln1747His
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5241G>C
  hgvsp: ENSP00000358363.4:p.Gln1747His
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2156G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7397G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2156G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5496G>C
  hgvsp: ENSP00000435654.1:p.Gln1832His
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2675G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13993G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5649G>C
  hgvsp: ENSP00000358366.4:p.Gln1883His
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln1747His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-144871722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871722
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871722
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13994A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7398A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5495A>G
  hgvsp: ENSP00000435654.1:p.Gln1832Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2155A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2674A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5240A>G
  hgvsp: ENSP00000358363.4:p.Gln1747Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5240A>G
  hgvsp: ENSP00000358360.3:p.Gln1747Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5648A>G
  hgvsp: ENSP00000358366.4:p.Gln1883Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2155A>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1747Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-144871727-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871727
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871727
    reference: chr 1
allele count: 1
allele frequency: 8.244294947896055e-6
allele num: 121296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2669G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2150G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5643G>A
  hgvsp: ENST00000369359.4:c.5643G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5235G>A
  hgvsp: ENST00000369356.4:c.5235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-13999G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5490G>A
  hgvsp: ENST00000530740.1:c.5490G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5235G>A
  hgvsp: ENST00000369354.3:c.5235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2150G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7403G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu1745Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-144871731-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871731
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871731
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7407A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2146A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5231A>G
  hgvsp: ENSP00000358363.4:p.Gln1744Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14003A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2146A>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5231A>G
  hgvsp: ENSP00000358360.3:p.Gln1744Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5639A>G
  hgvsp: ENSP00000358366.4:p.Gln1880Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5486A>G
  hgvsp: ENSP00000435654.1:p.Gln1829Arg
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2665A>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln1744Arg
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS

1-144871732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871732
    reference: chr 1
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5230C>T
  hgvsp: ENSP00000358363.4:p.Gln1744Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7408C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2664C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5230C>T
  hgvsp: ENSP00000358360.3:p.Gln1744Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5485C>T
  hgvsp: ENSP00000435654.1:p.Gln1829Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2145C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2145C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14004C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5638C>T
  hgvsp: ENSP00000358366.4:p.Gln1880Ter
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln1744Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

1-144871732-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871732
    reference: chr 1
allele count: 3
allele frequency: 2.472636159831201e-5
allele num: 121328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5638C>G
  hgvsp: ENSP00000358366.4:p.Gln1880Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5230C>G
  hgvsp: ENSP00000358360.3:p.Gln1744Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2145C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5230C>G
  hgvsp: ENSP00000358363.4:p.Gln1744Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14004C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5485C>G
  hgvsp: ENSP00000435654.1:p.Gln1829Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2145C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2664C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7408C>G
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln1744Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-144871733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871733
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7409G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5229G>A
  hgvsp: ENST00000369354.3:c.5229G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5637G>A
  hgvsp: ENST00000369359.4:c.5637G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5229G>A
  hgvsp: ENST00000369356.4:c.5229G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14005G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2663G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2144G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5484G>A
  hgvsp: ENST00000530740.1:c.5484G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2144G>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln1743Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

1-144871735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871735
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871735
    reference: chr 1
allele count: 2
allele frequency: 1.648342591524222e-5
allele num: 121334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2661C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5635C>T
  hgvsp: ENSP00000358366.4:p.Gln1879Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7411C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2142C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14007C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2142C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5227C>T
  hgvsp: ENSP00000358360.3:p.Gln1743Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5482C>T
  hgvsp: ENSP00000435654.1:p.Gln1828Ter
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5227C>T
  hgvsp: ENSP00000358363.4:p.Gln1743Ter
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50025
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln1743Ter
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-144871737-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871737
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871737
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5225C>A
  hgvsp: ENSP00000358360.3:p.Ala1742Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5633C>A
  hgvsp: ENSP00000358366.4:p.Ala1878Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14009C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2659C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5225C>A
  hgvsp: ENSP00000358363.4:p.Ala1742Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2140C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5480C>A
  hgvsp: ENSP00000435654.1:p.Ala1827Asp
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7413C>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2140C>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala1742Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/1-144871738-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871738
    reference: chr 1
allele count: 60700
allele frequency: 4.999835260782182e-1
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2139G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5479G>T
  hgvsp: ENSP00000435654.1:p.Ala1827Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14010G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2139G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7414G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5224G>T
  hgvsp: ENSP00000358363.4:p.Ala1742Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2658G>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5224G>T
  hgvsp: ENSP00000358360.3:p.Ala1742Ser
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5632G>T
  hgvsp: ENSP00000358366.4:p.Ala1878Ser
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 919
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 919
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 858
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 1113
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50248
  bin: 9.75e1
  variant carriers: 50246
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 976
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 8.25e1
  variant carriers: 659
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.25e1
  variant carriers: 356
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 740
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1742Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-144871738-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871738
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2658G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5632G>A
  hgvsp: ENSP00000358366.4:p.Ala1878Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5224G>A
  hgvsp: ENSP00000358363.4:p.Ala1742Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7414G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5224G>A
  hgvsp: ENSP00000358360.3:p.Ala1742Thr
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2139G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14010G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2139G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5479G>A
  hgvsp: ENSP00000435654.1:p.Ala1827Thr
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala1742Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: QD

1-144871743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871743
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871743
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5219C>G
  hgvsp: ENSP00000358363.4:p.Ala1740Gly
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2134C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5474C>G
  hgvsp: ENSP00000435654.1:p.Ala1825Gly
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2134C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2653C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5627C>G
  hgvsp: ENSP00000358366.4:p.Ala1876Gly
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7419C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14015C>G
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5219C>G
  hgvsp: ENSP00000358360.3:p.Ala1740Gly
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49909
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala1740Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-144871752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871752
    reference: chr 1
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5465T>C
  hgvsp: ENSP00000435654.1:p.Val1822Ala
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5210T>C
  hgvsp: ENSP00000358363.4:p.Val1737Ala
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5210T>C
  hgvsp: ENSP00000358360.3:p.Val1737Ala
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2125T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14024T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2644T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5618T>C
  hgvsp: ENSP00000358366.4:p.Val1873Ala
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7428T>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2125T>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49909
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1737Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP

1-144871754-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871754
    reference: chr 1
allele count: 124
allele frequency: 1.02136632456386e-3
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2642G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2123G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14026G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5208G>C
  hgvsp: ENST00000369354.3:c.5208G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5208G>C
  hgvsp: ENST00000369356.4:c.5208G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5463G>C
  hgvsp: ENST00000530740.1:c.5463G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5616G>C
  hgvsp: ENST00000369359.4:c.5616G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7430G>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2123G>C
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49925
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val1736Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP

1-144871754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871754
    reference: chr 1
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2642G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5616G>A
  hgvsp: ENST00000369359.4:c.5616G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2123G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14026G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5208G>A
  hgvsp: ENST00000369354.3:c.5208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7430G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5208G>A
  hgvsp: ENST00000369356.4:c.5208G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2123G>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5463G>A
  hgvsp: ENST00000530740.1:c.5463G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49925
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val1736Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

1-144871755-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871755
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871755
    reference: chr 1
allele count: 60700
allele frequency: 4.999752895244057e-1
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5462T>A
  hgvsp: ENSP00000435654.1:p.Val1821Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5615T>A
  hgvsp: ENSP00000358366.4:p.Val1872Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2641T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5207T>A
  hgvsp: ENSP00000358360.3:p.Val1736Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2122T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14027T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2122T>A
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5207T>A
  hgvsp: ENSP00000358363.4:p.Val1736Glu
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7431T>A
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 4.75e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 9.25e1
  variant carriers: 970
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 773
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 8.75e1
  variant carriers: 931
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 5.75e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 6.75e1
  variant carriers: 848
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 3.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 8.25e1
  variant carriers: 929
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.25e1
  variant carriers: 584
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 7.25e1
  variant carriers: 863
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.75e1
  variant carriers: 938
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 407
genotype depth: GenotypeDepth
  all individuals: 51513
  bin: 9.75e1
  variant carriers: 51510
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1736Glu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

1-144871757-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871757
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871757
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2639A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7433A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5460A>C
  hgvsp: ENST00000530740.1:c.5460A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2120A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5205A>C
  hgvsp: ENST00000369354.3:c.5205A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5613A>C
  hgvsp: ENST00000369359.4:c.5613A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2120A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14029A>C
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5205A>C
  hgvsp: ENST00000369356.4:c.5205A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro1735Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

1-144871761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144871761
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 144871761
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000435654
  ensembl transcript: ENST00000530740
  gene symbol: PDE4DIP
  hgvsc: ENST00000530740.1:c.5456C>T
  hgvsp: ENSP00000435654.1:p.Thr1819Ile
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000525886
  gene symbol: PDE4DIP
  hgvsc: ENST00000525886.1:n.294-7437C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000479369
  gene symbol: PDE4DIP
  hgvsc: ENST00000479369.2:n.424+2116C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358360
  ensembl transcript: ENST00000369354
  gene symbol: PDE4DIP
  hgvsc: ENST00000369354.3:c.5201C>T
  hgvsp: ENSP00000358360.3:p.Thr1734Ile
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358366
  ensembl transcript: ENST00000369359
  gene symbol: PDE4DIP
  hgvsc: ENST00000369359.4:c.5609C>T
  hgvsp: ENSP00000358366.4:p.Thr1870Ile
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000358363
  ensembl transcript: ENST00000369356
  gene symbol: PDE4DIP
  hgvsc: ENST00000369356.4:c.5201C>T
  hgvsp: ENSP00000358363.4:p.Thr1734Ile
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000327209
  ensembl transcript: ENST00000313382
  gene symbol: PDE4DIP
  hgvsc: ENST00000313382.9:c.4948+2116C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000178104
  ensembl transcript: ENST00000524974
  gene symbol: PDE4DIP
  hgvsc: ENST00000524974.1:n.2635C>T
  variant of: http://identifiers.org/hgnc/15580
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000178104
  ensembl protein: ENSP00000436694
  ensembl transcript: ENST00000530062
  gene symbol: PDE4DIP
  hgvsc: ENST00000530062.1:c.91-14033C>T
  variant of: http://identifiers.org/hgnc/15580
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr1734Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56206
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.495190146543199e-4
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.061e-1

FS
type: SiteQuality
SIO_000300: 7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.23e0

DP
type: SiteQuality
SIO_000300: 5.628111e6

QD
type: SiteQuality
SIO_000300: 4.75e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56208
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990110878034162e-5
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

DP
type: SiteQuality
SIO_000300: 5.62649e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.93e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.22e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.22e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.43e-1

DP
type: SiteQuality
SIO_000300: 5.62649e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 4.93e0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.045792375929034e-4
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 5.625194e6

FS
type: SiteQuality
SIO_000300: 1.488e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.004e0

VQSLOD
type: SiteQuality
SIO_000300: -1.417e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 5.1e0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56206
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

DP
type: SiteQuality
SIO_000300: 5.623398e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

MQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 56206
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.319281271596407e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.990380293086398e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.843e0

DP
type: SiteQuality
SIO_000300: 5.623205e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

FS
type: SiteQuality
SIO_000300: 1.606e0

QD
type: SiteQuality
SIO_000300: 4.33e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 89
allele frequency: 1.333533113575067e-3
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 5.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -8.0e-4

ClippingRankSum
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SIO_000300: -3.3e-2

ReadPosRankSum
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SIO_000300: 6.19e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.621615e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0999e1

MQRankSum
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SIO_000300: -5.117e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.631e1

VQSLOD
type: SiteQuality
SIO_000300: -2.051e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
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allele frequency: 9.502418797512094e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -9.304e-1

QD
type: SiteQuality
SIO_000300: 4.4e0

FS
type: SiteQuality
SIO_000300: 7.63e-1

DP
type: SiteQuality
SIO_000300: 5.62143e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.620974e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.283e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 4.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.156e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8646
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
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European (Finnish)
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African
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allele frequency: 0.0e0
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Other
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ClippingRankSum
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FS
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MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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num of homozygotes: 0

African
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Other
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num of homozygotes: 0

South Asian
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East Asian
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European (Finnish)
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Latino
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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DP
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ClippingRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 60694

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 2

South Asian
type: Population
allele count: 8256
allele frequency: 5.0e-1
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 5789
allele frequency: 5.0e-1
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 4324
allele frequency: 5.0e-1
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 454
allele frequency: 5.0e-1
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 5203
allele frequency: 5.0e-1
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33370
allele frequency: 5.0e-1
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3307
allele frequency: 5.0e-1
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.876045e6

VQSLOD
type: SiteQuality
SIO_000300: 1.0989e2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.463e0

FS
type: SiteQuality
SIO_000300: 2.228e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.997e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

GenotypeQuality
all individuals: 108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 3.755617e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 2.602e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

QD
type: SiteQuality
SIO_000300: 4.84e0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 1547
bin: 6.25e1
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GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.402e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.629e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

QD
type: SiteQuality
SIO_000300: 5.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 3.755553e6

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1097
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.956e0

MQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

FS
type: SiteQuality
SIO_000300: 1.528e0

DP
type: SiteQuality
SIO_000300: 3.754998e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1936
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.754671e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

QD
type: SiteQuality
SIO_000300: 5.01e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.444e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 6.394e0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.894635275955229e-4
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 3.754489e6

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.63e-1

QD
type: SiteQuality
SIO_000300: 5.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.505e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.623e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

QD
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.313e0

ClippingRankSum
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SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.0228009e7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.537e0

FS
type: SiteQuality
SIO_000300: 1.2573e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 3.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.888e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

DP
type: SiteQuality
SIO_000300: 3.751805e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1938
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.937e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.758e0

QD
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

DP
type: SiteQuality
SIO_000300: 3.749944e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.253e0

QD
type: SiteQuality
SIO_000300: 3.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.749256e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.673e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -2.554e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 60593

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 8
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variant carriers: 8

GenotypeQuality
all individuals: 14
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variant carriers: 14

East Asian
type: Population
allele count: 4317
allele frequency: 4.998842056507642e-1
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3307
allele frequency: 5.0e-1
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 5165
allele frequency: 5.0e-1
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 8256
allele frequency: 5.0e-1
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 5787
allele frequency: 5.0e-1
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 454
allele frequency: 5.0e-1
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33355
allele frequency: 5.0e-1
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 2.722e0

DP
type: SiteQuality
SIO_000300: 3.705572e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.977e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

VQSLOD
type: SiteQuality
SIO_000300: 1.101e2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2455
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.752536e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.225e0

VQSLOD
type: SiteQuality
SIO_000300: -1.056e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.949e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 2.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.934e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 2.751786e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 2.421726344923024e-3
allele num: 11562
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.740361e6

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.627e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.558e0

VQSLOD
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.492e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4322
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
all individuals: 2371
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variant carriers: 0

GenotypeQuality
all individuals: 294
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.731035e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: -2.619e0

FS
type: SiteQuality
SIO_000300: 1.495e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.395e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

QD
type: SiteQuality
SIO_000300: 3.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.429838415745353e-4
allele num: 16462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.365e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.6e-2

FS
type: SiteQuality
SIO_000300: 3.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 2.723575e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.793e0

QD
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13794
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.20471894517696e-4
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 3.98e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.69e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

DP
type: SiteQuality
SIO_000300: 3.603448e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13730
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162790697674419e-4
allele num: 8600
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.018e0

FS
type: SiteQuality
SIO_000300: 6.33e0

DP
type: SiteQuality
SIO_000300: 3.604326e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

QD
type: SiteQuality
SIO_000300: 6.52e0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49878
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.445922498554077e-4
allele num: 13832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65530
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.523e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 3.604801e6

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
all individuals: 250
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.167630057803468e-4
allele num: 13840
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e0

QD
type: SiteQuality
SIO_000300: 9.91e0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 1.756e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

DP
type: SiteQuality
SIO_000300: 3.605674e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.608803e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

FS
type: SiteQuality
SIO_000300: 1.7678e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14000
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African
type: Population
allele count: 2
allele frequency: 1.939864209505335e-4
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.613526e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 450
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 95
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522487134983709e-5
allele num: 65682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.03e-1

QD
type: SiteQuality
SIO_000300: 5.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

FS
type: SiteQuality
SIO_000300: 4.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 3.621865e6

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.908103916246607e-4
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.118451025056947e-5
allele num: 14048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 4.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

VQSLOD
type: SiteQuality
SIO_000300: -5.03e-1

DP
type: SiteQuality
SIO_000300: 3.621865e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 5.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.62e-1

GenotypeQuality
all individuals: 733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49935
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779795e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.077140835102619e-5
allele num: 14130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.043584124665206e-5
allele num: 65712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

FS
type: SiteQuality
SIO_000300: 3.454e0

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

QD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.806e1

DP
type: SiteQuality
SIO_000300: 3.624359e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 422
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variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
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variant carriers: 0

GenotypeQuality
all individuals: 1800
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variant carriers: 0

GenotypeQuality
all individuals: 2424
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variant carriers: 0

GenotypeQuality
all individuals: 454
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variant carriers: 0

GenotypeQuality
all individuals: 587
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variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49935
bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521792062332603e-5
allele num: 65712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.077140835102619e-5
allele num: 14130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.624359e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

MQ
type: SiteQuality
SIO_000300: 5.806e1

FS
type: SiteQuality
SIO_000300: 3.454e0

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.44e-1

QD
type: SiteQuality
SIO_000300: 5.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
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variant carriers: 0

GenotypeQuality
all individuals: 456
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GenotypeQuality
all individuals: 574
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GenotypeQuality
all individuals: 195
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GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 23
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 696
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GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
all individuals: 744
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variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15206
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66106
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.81e-1

FS
type: SiteQuality
SIO_000300: 7.718e0

QD
type: SiteQuality
SIO_000300: 2.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.365e0

VQSLOD
type: SiteQuality
SIO_000300: -2.225e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 3.654683e6

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
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variant carriers: 0

GenotypeQuality
all individuals: 780
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GenotypeQuality
all individuals: 769
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variant carriers: 0

GenotypeQuality
all individuals: 463
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 714
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 4432
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variant carriers: 0

GenotypeQuality
all individuals: 49948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 3.661411e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

FS
type: SiteQuality
SIO_000300: 8.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.785e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 880
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 49948
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 1113
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variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 463
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GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4432
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 8.79e-1

DP
type: SiteQuality
SIO_000300: 3.661411e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.785e0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 607
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 256
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 789
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variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -3.962e0

FS
type: SiteQuality
SIO_000300: 3.843e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.77e-1

DP
type: SiteQuality
SIO_000300: 3.662743e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

QD
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 920
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GenotypeQuality
all individuals: 286
bin: 2.25e1
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GenotypeQuality
all individuals: 1313
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GenotypeQuality
all individuals: 828
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GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 807
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GenotypeQuality
all individuals: 705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.906e1

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

FS
type: SiteQuality
SIO_000300: 2.636e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.447e0

DP
type: SiteQuality
SIO_000300: 3.680164e6

QD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.245e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 946
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 5040
bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.502313562886846e-5
allele num: 66564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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SIO_000300: 1.43e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.156871818602499e-4
allele num: 8644
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66584
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 6.092360180333861e-5
allele num: 16414
num of homozygotes: 0

Other
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ClippingRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.501546592990781e-4
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

MQ
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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ClippingRankSum
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QD
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.500915558490679e-5
allele num: 66626
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African
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European (Finnish)
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East Asian
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South Asian
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Latino
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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FS
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DP
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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QD
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.79e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

FS
type: SiteQuality
SIO_000300: 5.943e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

VQSLOD
type: SiteQuality
SIO_000300: -9.312e-1

DP
type: SiteQuality
SIO_000300: 3.69194e6

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 755
bin: 7.25e1
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GenotypeQuality
all individuals: 50014
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 5.943e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.312e-1

DP
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SIO_000300: 3.69194e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.324e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

FS
type: SiteQuality
SIO_000300: 1.341e0

DP
type: SiteQuality
SIO_000300: 3.692258e6

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.202e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.744e0

VQSLOD
type: SiteQuality
SIO_000300: -9.349e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

DP
type: SiteQuality
SIO_000300: 3.692666e6

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 925
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variant carriers: 0

GenotypeQuality
all individuals: 50029
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.768e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.497e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e0

DP
type: SiteQuality
SIO_000300: 3.692975e6

MQRankSum
type: SiteQuality
SIO_000300: -6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 2.89e0

VQSLOD
type: SiteQuality
SIO_000300: -4.251e0

GenotypeQuality
all individuals: 4
bin: 8.25e1
variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 60690
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variant carriers: 60689

African
type: Population
allele count: 5203
allele frequency: 5.0e-1
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 454
allele frequency: 5.0e-1
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 8256
allele frequency: 5.0e-1
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 5788
allele frequency: 5.0e-1
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33367
allele frequency: 5.0e-1
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3307
allele frequency: 5.0e-1
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4325
allele frequency: 4.997688929974578e-1
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.201e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.917e1

VQSLOD
type: SiteQuality
SIO_000300: 1.049e2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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FS
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MQRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
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MQRankSum
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FS
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QD
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VQSLOD
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DP
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GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59569
bin: 9.75e1
variant carriers: 124

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 123
allele frequency: 7.449127906976744e-3
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 6.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.756e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 1.0229339e7

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59569
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.0229339e7

FS
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.756e-1

QD
type: SiteQuality
SIO_000300: 6.12e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

GenotypeQuality
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60693
bin: 9.75e1
variant carriers: 60693

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 5788
allele frequency: 5.0e-1
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33368
allele frequency: 4.999850160328448e-1
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 4324
allele frequency: 4.997688395746648e-1
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 8256
allele frequency: 5.0e-1
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3307
allele frequency: 5.0e-1
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 5203
allele frequency: 5.0e-1
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 454
allele frequency: 5.0e-1
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0368e2

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.996e-1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.53e-1

DP
type: SiteQuality
SIO_000300: 1.0581911e7

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.681e0

DP
type: SiteQuality
SIO_000300: 9.60978e6

FS
type: SiteQuality
SIO_000300: 7.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

QD
type: SiteQuality
SIO_000300: 5.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1