2-242186120-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186120
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186120
    reference: chr 2
allele count: 491
allele frequency: 4.332862689728203e-3
allele num: 113320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.541A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.307A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+47A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+47A>C
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 7.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17720
  bin: 9.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 7.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 24
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-242186120-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186120
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186120
    reference: chr 2
allele count: 1
allele frequency: 8.824567596187787e-6
allele num: 113320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.307A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.541A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+47A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+47A>G
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17720
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-242186123-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186123
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186123
    reference: chr 2
allele count: 1
allele frequency: 8.555637309423178e-6
allele num: 116882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.538C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.304C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+44C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+44C>G
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

2-242186130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186130
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186130
    reference: chr 2
allele count: 1
allele frequency: 8.542043940274029e-6
allele num: 117068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.531A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.297A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+37A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+37A>G
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-242186141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186141
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186141
    reference: chr 2
allele count: 1
allele frequency: 8.498053945646446e-6
allele num: 117674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.520G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.286G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+26G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+26G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-242186155-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186155
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186155
    reference: chr 2
allele count: 1
allele frequency: 8.386447500838645e-6
allele num: 119240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1950+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.506T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1535+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1950+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1851+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.272T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1375+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.477+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1950+12T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.113+12T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

2-242186199-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186199
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186199
    reference: chr 2
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.462C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1503C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.81C>T
  hgvsp: ENSP00000405180.1:p.Arg28Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1918C>T
  hgvsp: ENSP00000375836.1:p.Arg640Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.228C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1918C>T
  hgvsp: ENSP00000375837.2:p.Arg640Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1343C>T
  hgvsp: ENSP00000362389.4:p.Arg449Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.445C>T
  hgvsp: ENSP00000388876.1:p.Arg149Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1918C>T
  hgvsp: ENSP00000312042.4:p.Arg640Trp
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1819C>T
  hgvsp: ENSP00000399139.2:p.Arg607Trp
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg640Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-242186209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186209
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186209
    reference: chr 2
allele count: 5
allele frequency: 4.119159032491926e-5
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1333C>T
  hgvsp: ENST00000373292.4:c.1333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1908C>T
  hgvsp: ENST00000310931.4:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.71C>T
  hgvsp: ENST00000427487.1:c.71C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.435C>T
  hgvsp: ENST00000452931.1:c.435C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1908C>T
  hgvsp: ENST00000391975.1:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1493C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1908C>T
  hgvsp: ENST00000391976.2:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1809C>T
  hgvsp: ENST00000427183.2:c.1809C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.452C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.218C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17678
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51159
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Cys636Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-242186213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186213
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186213
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.67A>G
  hgvsp: ENSP00000405180.1:p.Asn23Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1904A>G
  hgvsp: ENSP00000312042.4:p.Asn635Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.448A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1329A>G
  hgvsp: ENSP00000362389.4:p.Asn444Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1805A>G
  hgvsp: ENSP00000399139.2:p.Asn602Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1904A>G
  hgvsp: ENSP00000375836.1:p.Asn635Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.431A>G
  hgvsp: ENSP00000388876.1:p.Asn144Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1489A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.214A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1904A>G
  hgvsp: ENSP00000375837.2:p.Asn635Ser
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn635Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-242186219-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186219
    reference: chr 2
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.208G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1898G>C
  hgvsp: ENSP00000312042.4:p.Arg633Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.425G>C
  hgvsp: ENSP00000388876.1:p.Arg142Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.442G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1799G>C
  hgvsp: ENSP00000399139.2:p.Arg600Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1323G>C
  hgvsp: ENSP00000362389.4:p.Arg442Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.61G>C
  hgvsp: ENSP00000405180.1:p.Arg21Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1898G>C
  hgvsp: ENSP00000375836.1:p.Arg633Pro
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1483G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1898G>C
  hgvsp: ENSP00000375837.2:p.Arg633Pro
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51160
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg633Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

2-242186219-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186219
    reference: chr 2
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.442G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1799G>A
  hgvsp: ENSP00000399139.2:p.Arg600Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1898G>A
  hgvsp: ENSP00000375836.1:p.Arg633Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.61G>A
  hgvsp: ENSP00000405180.1:p.Arg21Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1483G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1898G>A
  hgvsp: ENSP00000312042.4:p.Arg633Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.208G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.425G>A
  hgvsp: ENSP00000388876.1:p.Arg142Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1323G>A
  hgvsp: ENSP00000362389.4:p.Arg442Gln
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1898G>A
  hgvsp: ENSP00000375837.2:p.Arg633Gln
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg633Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

2-242186228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186228
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186228
    reference: chr 2
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1474C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1889C>G
  hgvsp: ENSP00000375837.2:p.Thr630Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1889C>G
  hgvsp: ENSP00000312042.4:p.Thr630Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.199C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.52C>G
  hgvsp: ENSP00000405180.1:p.Thr18Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1314C>G
  hgvsp: ENSP00000362389.4:p.Thr439Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.416C>G
  hgvsp: ENSP00000388876.1:p.Thr139Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1889C>G
  hgvsp: ENSP00000375836.1:p.Thr630Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.433C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1790C>G
  hgvsp: ENSP00000399139.2:p.Thr597Arg
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17674
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr630Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-242186254-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186254
    reference: chr 2
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.26T>G
  hgvsp: ENSP00000405180.1:p.Asn9Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.407T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.390T>G
  hgvsp: ENSP00000388876.1:p.Asn130Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1863T>G
  hgvsp: ENSP00000312042.4:p.Asn621Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1764T>G
  hgvsp: ENSP00000399139.2:p.Asn588Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.173T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1863T>G
  hgvsp: ENSP00000375836.1:p.Asn621Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1863T>G
  hgvsp: ENSP00000375837.2:p.Asn621Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1288T>G
  hgvsp: ENSP00000362389.4:p.Asn430Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1448T>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17675
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn621Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

2-242186254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186254
    reference: chr 2
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1863T>C
  hgvsp: ENST00000391975.1:c.1863T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1863T>C
  hgvsp: ENST00000310931.4:c.1863T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1764T>C
  hgvsp: ENST00000427183.2:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1288T>C
  hgvsp: ENST00000373292.4:c.1288T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.390T>C
  hgvsp: ENST00000452931.1:c.390T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.173T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1448T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.26T>C
  hgvsp: ENST00000427487.1:c.26T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.407T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1863T>C
  hgvsp: ENST00000391976.2:c.1863T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn621Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

2-242186266-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186266
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186266
    reference: chr 2
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1851T>C
  hgvsp: ENST00000310931.4:c.1851T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.14T>C
  hgvsp: ENST00000427487.1:c.14T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.395T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1851T>C
  hgvsp: ENST00000391976.2:c.1851T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.378T>C
  hgvsp: ENST00000452931.1:c.378T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1276T>C
  hgvsp: ENST00000373292.4:c.1276T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1851T>C
  hgvsp: ENST00000391975.1:c.1851T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1436T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1752T>C
  hgvsp: ENST00000427183.2:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.161T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu617Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

2-242186272-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186272
    reference: chr 2
allele count: 3
allele frequency: 2.471088267272907e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1845C>T
  hgvsp: ENST00000391976.2:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000405180
  ensembl transcript: ENST00000427487
  gene symbol: HDLBP
  hgvsc: ENST00000427487.1:c.8C>T
  hgvsp: ENST00000427487.1:c.8C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1430C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.155C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1845C>T
  hgvsp: ENST00000391975.1:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.389C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1746C>T
  hgvsp: ENST00000427183.2:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.372C>T
  hgvsp: ENST00000452931.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1270C>T
  hgvsp: ENST00000373292.4:c.1270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1845C>T
  hgvsp: ENST00000310931.4:c.1845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ile615Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

2-242186296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186296
    reference: chr 2
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1821T>C
  hgvsp: ENST00000391975.1:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.131T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1722T>C
  hgvsp: ENST00000427183.2:c.1722T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.365T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1821T>C
  hgvsp: ENST00000310931.4:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1246T>C
  hgvsp: ENST00000373292.4:c.1246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1406T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.348T>C
  hgvsp: ENST00000452931.1:c.348T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1821T>C
  hgvsp: ENST00000391976.2:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1821T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-242186302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186302
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186302
    reference: chr 2
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-4G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-4G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5732
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1819-4G>A
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

2-242186305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186305
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186305
    reference: chr 2
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-7C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-7C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1819-7C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

2-242186306-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186306
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186306
    reference: chr 2
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-8C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-8C>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17670
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51162
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1819-8C>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

2-242186321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186321
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186321
    reference: chr 2
allele count: 3
allele frequency: 2.472432378974435e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-23C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-23C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17670
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5363
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-242186323-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186323
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186323
    reference: chr 2
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-25C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-25C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-242186323-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186323
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186323
    reference: chr 2
allele count: 2
allele frequency: 1.648261084555794e-5
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-25C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-25C>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

2-242186332-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186332
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186332
    reference: chr 2
allele count: 2
allele frequency: 1.648505629646725e-5
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-34A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-34A>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17668
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

2-242186334-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186334
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186334
    reference: chr 2
allele count: 5
allele frequency: 4.121332014507089e-5
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-36C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-36C>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

2-242186341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186341
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186341
    reference: chr 2
allele count: 2
allele frequency: 1.649049323065253e-5
allele num: 121282
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-43G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-43G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-242186346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186346
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186346
    reference: chr 2
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1244-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1819-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.363-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1819-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1720-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1404-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1819-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.346-48T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.129-48T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17667
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

2-242186421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186421
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186421
    reference: chr 2
allele count: 2
allele frequency: 1.650682557237418e-5
allele num: 121162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+50G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+50G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

2-242186429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186429
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186429
    reference: chr 2
allele count: 1
allele frequency: 8.25218682950982e-6
allele num: 121180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+42C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+42C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8248
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-242186433-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186433
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186433
    reference: chr 2
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+38T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+38T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-242186441-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186441
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186441
    reference: chr 2
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+30T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+30T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5436
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/2-242186443-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186443
    reference: chr 2
allele count: 38
allele frequency: 3.134537655695785e-4
allele num: 121230
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+28T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+28T>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10502
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28946
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

2-242186448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186448
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186448
    reference: chr 2
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+23T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+23T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-242186449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186449
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186449
    reference: chr 2
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+22C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+22C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29024
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-242186456-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186456
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186456
    reference: chr 2
allele count: 2
allele frequency: 1.649294102124291e-5
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+15G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+15G>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-242186456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186456
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186456
    reference: chr 2
allele count: 16
allele frequency: 1.319435281699433e-4
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+15G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+15G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-242186457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186457
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186457
    reference: chr 2
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+14C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+14C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

2-242186463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186463
    reference: chr 2
allele count: 3
allele frequency: 2.473166147301776e-5
allele num: 121302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+8C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+8C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1818+8C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-242186466-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186466
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186466
    reference: chr 2
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1719+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1243+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1818+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.362+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.128+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.345+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1818+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1818+5T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1403+5T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1818+5T>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-242186480-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186480
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186480
    reference: chr 2
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1809C>G
  hgvsp: ENSP00000312042.4:p.Asn603Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1809C>G
  hgvsp: ENSP00000375836.1:p.Asn603Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1809C>G
  hgvsp: ENSP00000375837.2:p.Asn603Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1234C>G
  hgvsp: ENSP00000362389.4:p.Asn412Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.353C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.336C>G
  hgvsp: ENSP00000388876.1:p.Asn112Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1710C>G
  hgvsp: ENSP00000399139.2:p.Asn570Lys
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.119C>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1394C>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29272
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7851
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39916
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn603Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-242186481-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186481
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186481
    reference: chr 2
allele count: 2
allele frequency: 1.648695881557688e-5
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1709A>C
  hgvsp: ENSP00000399139.2:p.Asn570Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1233A>C
  hgvsp: ENSP00000362389.4:p.Asn412Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1808A>C
  hgvsp: ENSP00000375837.2:p.Asn603Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1808A>C
  hgvsp: ENSP00000375836.1:p.Asn603Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.352A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.335A>C
  hgvsp: ENSP00000388876.1:p.Asn112Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.118A>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1808A>C
  hgvsp: ENSP00000312042.4:p.Asn603Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1393A>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29270
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5375
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn603Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-242186485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186485
    reference: chr 2
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1804G>A
  hgvsp: ENSP00000375836.1:p.Ala602Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.114G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1229G>A
  hgvsp: ENSP00000362389.4:p.Ala411Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1804G>A
  hgvsp: ENSP00000312042.4:p.Ala602Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1705G>A
  hgvsp: ENSP00000399139.2:p.Ala569Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1389G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1804G>A
  hgvsp: ENSP00000375837.2:p.Ala602Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.348G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.331G>A
  hgvsp: ENSP00000388876.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala602Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-242186486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186486
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186486
    reference: chr 2
allele count: 2
allele frequency: 1.648858989579211e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.113C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1803C>T
  hgvsp: ENST00000391976.2:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.347C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1803C>T
  hgvsp: ENST00000310931.4:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1388C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1803C>T
  hgvsp: ENST00000391975.1:c.1803C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1704C>T
  hgvsp: ENST00000427183.2:c.1704C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1228C>T
  hgvsp: ENST00000373292.4:c.1228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.330C>T
  hgvsp: ENST00000452931.1:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly601Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-242186499-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186499
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186499
    reference: chr 2
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.100T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1790T>C
  hgvsp: ENSP00000312042.4:p.Ile597Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1790T>C
  hgvsp: ENSP00000375837.2:p.Ile597Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.334T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1375T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1691T>C
  hgvsp: ENSP00000399139.2:p.Ile564Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1215T>C
  hgvsp: ENSP00000362389.4:p.Ile406Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1790T>C
  hgvsp: ENSP00000375836.1:p.Ile597Thr
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.317T>C
  hgvsp: ENSP00000388876.1:p.Ile106Thr
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40153
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile597Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

2-242186508-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186508
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186508
    reference: chr 2
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.91A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1781A>G
  hgvsp: ENSP00000375837.2:p.Lys594Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.325A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.308A>G
  hgvsp: ENSP00000388876.1:p.Lys103Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1781A>G
  hgvsp: ENSP00000312042.4:p.Lys594Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1682A>G
  hgvsp: ENSP00000399139.2:p.Lys561Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1781A>G
  hgvsp: ENSP00000375836.1:p.Lys594Arg
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1366A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1206A>G
  hgvsp: ENSP00000362389.4:p.Lys403Arg
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys594Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

2-242186528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186528
    reference: chr 2
allele count: 25
allele frequency: 2.065603569362968e-4
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1186G>A
  hgvsp: ENST00000373292.4:c.1186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.305G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1662G>A
  hgvsp: ENST00000427183.2:c.1662G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1346G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1761G>A
  hgvsp: ENST00000391976.2:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.288G>A
  hgvsp: ENST00000452931.1:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.71G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1761G>A
  hgvsp: ENST00000310931.4:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1761G>A
  hgvsp: ENST00000391975.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro587Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-242186529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186529
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186529
    reference: chr 2
allele count: 2
allele frequency: 1.652892561983471e-5
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1760C>T
  hgvsp: ENSP00000312042.4:p.Pro587Leu
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1661C>T
  hgvsp: ENSP00000399139.2:p.Pro554Leu
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.304C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1185C>T
  hgvsp: ENSP00000362389.4:p.Pro396Leu
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1760C>T
  hgvsp: ENSP00000375837.2:p.Pro587Leu
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.70C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.287C>T
  hgvsp: ENSP00000388876.1:p.Pro96Leu
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1345C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1760C>T
  hgvsp: ENSP00000375836.1:p.Pro587Leu
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro587Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

2-242186550-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186550
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186550
    reference: chr 2
allele count: 2
allele frequency: 1.672436572842975e-5
allele num: 119586
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.266A>G
  hgvsp: ENSP00000388876.1:p.Asn89Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1739A>G
  hgvsp: ENSP00000375836.1:p.Asn580Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.283A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1739A>G
  hgvsp: ENSP00000375837.2:p.Asn580Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1640A>G
  hgvsp: ENSP00000399139.2:p.Asn547Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1739A>G
  hgvsp: ENSP00000312042.4:p.Asn580Ser
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1324A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.49A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1164A>G
  hgvsp: ENSP00000362389.4:p.Asn389Ser
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn580Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-242186566-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186566
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186566
    reference: chr 2
allele count: 6
allele frequency: 5.125839356194577e-5
allele num: 117054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.267G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-9G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-9G>C
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23311
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-242186572-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186572
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186572
    reference: chr 2
allele count: 1
allele frequency: 8.626787901792646e-6
allele num: 115918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.261T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-15T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-15T>G
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-242186575-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186575
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186575
    reference: chr 2
allele count: 1
allele frequency: 8.6629589202488e-6
allele num: 115434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.258G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-18G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-18G>T
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-242186580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186580
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186580
    reference: chr 2
allele count: 3
allele frequency: 2.617801047120419e-5
allele num: 114600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.253G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-23G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-23G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9909
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12796
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4677
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-242186590-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186590
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186590
    reference: chr 2
allele count: 11
allele frequency: 9.73416870199285e-5
allele num: 113004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.243G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-33G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-33G>T
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6399
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16285
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5297
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-242186592-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186592
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186592
    reference: chr 2
allele count: 2
allele frequency: 1.77563123690472e-5
allele num: 112636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.241A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-35A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-35A>T
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16428
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10035
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/2-242186596-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186596
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186596
    reference: chr 2
allele count: 1
allele frequency: 9.006412565746812e-6
allele num: 111032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.237G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-39G>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-39G>T
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9671
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-242186597-TAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186597
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186595
    reference: chr 2
allele count: 9
allele frequency: 8.103873651605468e-5
allele num: 111058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-42_1157-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-42_1633-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.234_235delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-42_1317-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-42_1732-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-42_42-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-42_1732-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-42_259-41delCT
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-42_1732-41delCT
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15368
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7479
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10094
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: TAG
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/2-242186600-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242186600
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242186600
    reference: chr 2
allele count: 70
allele frequency: 6.357971988591982e-4
allele num: 110098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.259-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000488923
  gene symbol: HDLBP
  hgvsc: ENST00000488923.1:n.233T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.42-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1317-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1732-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1732-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1157-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1633-43T>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1732-43T>G
  variant of: http://identifiers.org/hgnc/4857
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16046
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6116
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15686
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8026
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6932
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-242187376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187376
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187376
    reference: chr 2
allele count: 1
allele frequency: 8.405056481979558e-6
allele num: 118976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+42G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+42G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10588
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

2-242187378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187378
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187378
    reference: chr 2
allele count: 6
allele frequency: 5.042440541221951e-5
allele num: 118990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+40G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+40G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10487
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3335
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-242187380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187380
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187380
    reference: chr 2
allele count: 1
allele frequency: 8.393063971933595e-6
allele num: 119146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+38C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+38C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5201
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

2-242187386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187386
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187386
    reference: chr 2
allele count: 2
allele frequency: 1.675603217158177e-5
allele num: 119360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+32C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+32C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

2-242187389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187389
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187389
    reference: chr 2
allele count: 1
allele frequency: 8.365260745177427e-6
allele num: 119542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+29T>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+29T>C
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-242187400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187400
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187400
    reference: chr 2
allele count: 2
allele frequency: 1.664918502239315e-5
allele num: 120126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+18C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+18C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-242187403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187403
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187403
    reference: chr 2
allele count: 15
allele frequency: 1.247090123046225e-4
allele num: 120280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+15C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+15C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6749
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

2-242187404-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187404
    reference: chr 2
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+14A>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+14A>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

2-242187412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187412
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187412
    reference: chr 2
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+6G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+6G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5003
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1731+6G>A
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

2-242187415-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187415
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187415
    reference: chr 2
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1731+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1731+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1632+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.41+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1731+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1156+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.258+3A>G
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1316+3A>G
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5627
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1731+3A>G
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-242187425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187425
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187425
    reference: chr 2
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1149C>T
  hgvsp: ENSP00000362389.4:p.Ala384Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1724C>T
  hgvsp: ENSP00000375836.1:p.Ala575Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1724C>T
  hgvsp: ENSP00000312042.4:p.Ala575Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1309C>T
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1724C>T
  hgvsp: ENSP00000375837.2:p.Ala575Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1625C>T
  hgvsp: ENSP00000399139.2:p.Ala542Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.251C>T
  hgvsp: ENSP00000388876.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.34C>T
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala575Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

2-242187427-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187427
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187427
    reference: chr 2
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1722G>A
  hgvsp: ENST00000391975.1:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.249G>A
  hgvsp: ENST00000452931.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1722G>A
  hgvsp: ENST00000310931.4:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1307G>A
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1623G>A
  hgvsp: ENST00000427183.2:c.1623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1722G>A
  hgvsp: ENST00000391976.2:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1147G>A
  hgvsp: ENST00000373292.4:c.1147G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.32G>A
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12315
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16854
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val574Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-242187430-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 242187430
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 242187430
    reference: chr 2
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000460826
  gene symbol: HDLBP
  hgvsc: ENST00000460826.1:n.29G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000399139
  ensembl transcript: ENST00000427183
  gene symbol: HDLBP
  hgvsc: ENST00000427183.2:c.1620G>C
  hgvsp: ENSP00000399139.2:p.Met540Ile
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000362389
  ensembl transcript: ENST00000373292
  gene symbol: HDLBP
  hgvsc: ENST00000373292.4:c.1144G>C
  hgvsp: ENSP00000362389.4:p.Met382Ile
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115677
  ensembl transcript: ENST00000487169
  gene symbol: HDLBP
  hgvsc: ENST00000487169.1:n.1304G>C
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375836
  ensembl transcript: ENST00000391975
  gene symbol: HDLBP
  hgvsc: ENST00000391975.1:c.1719G>C
  hgvsp: ENSP00000375836.1:p.Met573Ile
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000312042
  ensembl transcript: ENST00000310931
  gene symbol: HDLBP
  hgvsc: ENST00000310931.4:c.1719G>C
  hgvsp: ENSP00000312042.4:p.Met573Ile
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000388876
  ensembl transcript: ENST00000452931
  gene symbol: HDLBP
  hgvsc: ENST00000452931.1:c.246G>C
  hgvsp: ENSP00000388876.1:p.Met82Ile
  variant of: http://identifiers.org/hgnc/4857
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115677
  ensembl protein: ENSP00000375837
  ensembl transcript: ENST00000391976
  gene symbol: HDLBP
  hgvsc: ENST00000391976.2:c.1719G>C
  hgvsp: ENSP00000375837.2:p.Met573Ile
  variant of: http://identifiers.org/hgnc/4857
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13537
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met573Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 869
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 414
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 996
bin: 3.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1758
bin: 2.25e1
variant carriers: 19

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 353
bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 571
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 518
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 705
bin: 6.25e1
variant carriers: 24

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 18

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 22

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 48967
bin: 9.75e1
variant carriers: 173

GenotypeQuality
all individuals: 284
bin: 8.75e1
variant carriers: 19

African
type: Population
allele count: 60
allele frequency: 6.520321669202347e-3
allele num: 9202
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.04384133611691e-3
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 269
allele frequency: 4.23768864803554e-3
allele num: 63478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.292882147024503e-5
allele num: 13712
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.08695652173913e-2
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.401214385801028e-3
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 128
allele frequency: 2.119205298013245e-2
allele num: 6040
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 6.4e-1

FS
type: SiteQuality
SIO_000300: 1.37339e2

DP
type: SiteQuality
SIO_000300: 4.684552e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e0

VQSLOD
type: SiteQuality
SIO_000300: -9.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.109e0

GenotypeQuality
all individuals: 869
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48967
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 996
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575348939790164e-5
allele num: 63478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.4e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.35e0

FS
type: SiteQuality
SIO_000300: 1.37339e2

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 4.684552e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51148
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.265329845975008e-5
allele num: 13764
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.209e0

DP
type: SiteQuality
SIO_000300: 4.681845e6

QD
type: SiteQuality
SIO_000300: 1.021e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.813e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1589
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524622655892666e-5
allele num: 65590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.703e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

DP
type: SiteQuality
SIO_000300: 4.686743e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 1.661e1

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.061149555147578e-5
allele num: 14162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.986e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

DP
type: SiteQuality
SIO_000300: 4.704496e6

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511898642315019e-5
allele num: 66142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

VQSLOD
type: SiteQuality
SIO_000300: 2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.587e0

MQRankSum
type: SiteQuality
SIO_000300: -9.66e-1

DP
type: SiteQuality
SIO_000300: 4.727389e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

QD
type: SiteQuality
SIO_000300: 1.366e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.29e-1

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
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GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51159
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

FS
type: SiteQuality
SIO_000300: 8.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

DP
type: SiteQuality
SIO_000300: 4.75616e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
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GenotypeQuality
all individuals: 1218
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variant carriers: 0

GenotypeQuality
all individuals: 521
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
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GenotypeQuality
all individuals: 6048
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
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GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496942079386017e-5
allele num: 66712
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

FS
type: SiteQuality
SIO_000300: 4.129e0

DP
type: SiteQuality
SIO_000300: 4.756864e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

QD
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ClippingRankSum
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SIO_000300: -7.38e-1

FS
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DP
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 2.434e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele num: 8654
num of homozygotes: 0

BaseQRankSum
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SIO_000300: -4.26e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996703626011388e-5
allele num: 66740
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 5.9e0

QD
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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South Asian
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allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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FS
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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SIO_000300: 4.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
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African
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.212415130940834e-4
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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Latino
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FS
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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SIO_000300: 6.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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Other
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South Asian
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African
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European (Finnish)
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InbreedingCoeff
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FS
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QD
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Other
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Latino
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South Asian
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European (Finnish)
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InbreedingCoeff
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MQRankSum
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QD
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MQ
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Latino
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East Asian
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Other
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African
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South Asian
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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East Asian
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.820609297244811e-4
allele num: 16478
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

VQSLOD
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DP
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.21e0

ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.1e-1

DP
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SIO_000300: 4.750926e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.276e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.75118e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

BaseQRankSum
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SIO_000300: 4.6e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.686e0

FS
type: SiteQuality
SIO_000300: 1.521e0

ReadPosRankSum
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QD
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SIO_000300: 1.35e1

DP
type: SiteQuality
SIO_000300: 1.903604e6

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.901617e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

FS
type: SiteQuality
SIO_000300: 6.557e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

QD
type: SiteQuality
SIO_000300: 1.574e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
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African
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allele num: 10390
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele num: 906
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MQ
type: SiteQuality
SIO_000300: 5.985e1

ReadPosRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
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allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
allele frequency: 1.200732446792543e-4
allele num: 66626
num of homozygotes: 0

South Asian
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allele frequency: 1.696147322510298e-3
allele num: 16508
num of homozygotes: 0

Latino
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African
type: Population
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allele frequency: 1.92492781520693e-4
allele num: 10390
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Other
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East Asian
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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QD
type: SiteQuality
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 5413
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.122e0

DP
type: SiteQuality
SIO_000300: 1.902395e6

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 1.705e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 2.52e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.39e-1

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211680600993578e-4
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.183e0

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.351e1

DP
type: SiteQuality
SIO_000300: 1.90353e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.059118043520123e-3
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.90353e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.183e0

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.572e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

FS
type: SiteQuality
SIO_000300: 8.98e-1

BaseQRankSum
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SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-2

DP
type: SiteQuality
SIO_000300: 1.902922e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.887391722810395e-4
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.186e0

DP
type: SiteQuality
SIO_000300: 1.902529e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.853e0

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66682
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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African
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MQ
type: SiteQuality
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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QD
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BaseQRankSum
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SIO_000300: -2.56e-1

MQRankSum
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MQ
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SIO_000300: 5.944e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10388
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

ReadPosRankSum
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
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SIO_000300: 5.95e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
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South Asian
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ClippingRankSum
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SIO_000300: -9.02e-1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
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MQRankSum
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QD
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DP
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.478e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 3.458022612460909e-4
allele num: 66512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
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European (Finnish)
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allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
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South Asian
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East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
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Latino
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.92e-1

VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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BaseQRankSum
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DP
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SIO_000300: 1.895162e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66492
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Other
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
type: Population
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 65612
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South Asian
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BaseQRankSum
type: SiteQuality
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FS
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DP
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ClippingRankSum
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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Latino
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European (Finnish)
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East Asian
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South Asian
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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MQ
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QD
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DP
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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African
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Latino
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European (Finnish)
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Other
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South Asian
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: -1.365e0

DP
type: SiteQuality
SIO_000300: 1.66231e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.95e-1

QD
type: SiteQuality
SIO_000300: 1.773e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.797e0

GenotypeQuality
all individuals: 725
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1247
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584936761023235e-5
allele num: 63094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.923e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.029e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.059e0

DP
type: SiteQuality
SIO_000300: 1.620031e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

GenotypeQuality
all individuals: 752
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 644
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.795089828016112e-5
allele num: 62564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 2.579e0

QD
type: SiteQuality
SIO_000300: 1.723e1

DP
type: SiteQuality
SIO_000300: 1.5793e6

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3493
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variant carriers: 0

GenotypeQuality
all individuals: 7119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5257
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.020408163265306e-3
allele num: 10780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

FS
type: SiteQuality
SIO_000300: 1.458e0

DP
type: SiteQuality
SIO_000300: 1.465246e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.394e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

GenotypeQuality
all individuals: 12660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1894
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variant carriers: 0

GenotypeQuality
all individuals: 2112
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variant carriers: 0

GenotypeQuality
all individuals: 1084
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variant carriers: 0

GenotypeQuality
all individuals: 4740
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variant carriers: 0

GenotypeQuality
all individuals: 5812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
all individuals: 1333
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variant carriers: 0

GenotypeQuality
all individuals: 7490
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.25775345321866e-5
allele num: 61392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.432e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.617e0

DP
type: SiteQuality
SIO_000300: 1.443453e6

FS
type: SiteQuality
SIO_000300: 3.3206e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.441e0

QD
type: SiteQuality
SIO_000300: 5.31e0

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

GenotypeQuality
all individuals: 971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7852
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variant carriers: 0

GenotypeQuality
all individuals: 6626
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1279
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variant carriers: 0

GenotypeQuality
all individuals: 5281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 999
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.420958006934635e-5
allele num: 15574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.9379e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.478e0

MQ
type: SiteQuality
SIO_000300: 5.294e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.424e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

DP
type: SiteQuality
SIO_000300: 1.406316e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.388e0

QD
type: SiteQuality
SIO_000300: 4.5e0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5287
bin: 9.75e1
variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9160
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60408
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.225092250922509e-4
allele num: 9756
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

QD
type: SiteQuality
SIO_000300: 1.697e1

MQ
type: SiteQuality
SIO_000300: 5.868e1

DP
type: SiteQuality
SIO_000300: 1.399101e6

GenotypeQuality
all individuals: 5332
bin: 9.75e1
variant carriers: 67

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 754
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variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.900057001710051e-4
allele num: 10526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.176470588235294e-3
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.016051364365971e-5
allele num: 59808
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 4.129032258064516e-3
allele num: 15500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
SIO_000300: 1.381295e6

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1377
bin: 2.25e1
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GenotypeQuality
all individuals: 6094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
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GenotypeQuality
all individuals: 1197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5101
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variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4618
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15056
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66038
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.182957e6

VQSLOD
type: SiteQuality
SIO_000300: 4.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.072e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 772
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 10778
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variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 16732
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 749
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GenotypeQuality
all individuals: 1408
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GenotypeQuality
all individuals: 105
bin: 1.75e1
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GenotypeQuality
all individuals: 5141
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variant carriers: 0

GenotypeQuality
all individuals: 6126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.085953116481919e-5
allele num: 66036
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.188928e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.253e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
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SIO_000300: 1.1e-3

MQRankSum
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SIO_000300: -1.83e-1

FS
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SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 1.238e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.590220113351786e-5
allele num: 15174
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.103e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.023705853894533e-5
allele num: 66144
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 1.711e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.971e0

QD
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SIO_000300: 1.446e1

DP
type: SiteQuality
SIO_000300: 2.215152e6

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510482750286992e-5
allele num: 66204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.222146e6

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 8.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.6e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.892e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

QD
type: SiteQuality
SIO_000300: 3.095e1

DP
type: SiteQuality
SIO_000300: 2.244173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -1.466e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.460806367883717e-4
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.655878368207135e-4
allele num: 66430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
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ClippingRankSum
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QD
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DP
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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East Asian
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allele frequency: 1.155802126675913e-4
allele num: 8652
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66522
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Other
type: Population
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allele num: 906
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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MQ
type: SiteQuality
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele frequency: 1.922337562475971e-4
allele num: 10404
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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Latino
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
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VQSLOD
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FS
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
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allele num: 16422
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.213e1

MQ
type: SiteQuality
SIO_000300: 5.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 8.173e0

VQSLOD
type: SiteQuality
SIO_000300: -8.497e-1

DP
type: SiteQuality
SIO_000300: 2.269381e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7030
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.270433e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 5.263e0

QD
type: SiteQuality
SIO_000300: 1.248e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0