2-99013768-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99013768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99013768
    reference: chr 2
allele count: 5
allele frequency: 5.174269393161685e-5
allele num: 96632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000144191
  ensembl protein: ENSP00000386761
  ensembl transcript: ENST00000409937
  gene symbol: CNGA3
  hgvsc: ENST00000409937.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/2150
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000144191
  ensembl protein: ENSP00000377140
  ensembl transcript: ENST00000393504
  gene symbol: CNGA3
  hgvsc: ENST00000393504.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/2150
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000144191
  ensembl protein: ENSP00000272602
  ensembl transcript: ENST00000272602
  gene symbol: CNGA3
  hgvsc: ENST00000272602.2:c.*50G>A
  variant of: http://identifiers.org/hgnc/2150
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000144191
  ensembl protein: ENSP00000410070
  ensembl transcript: ENST00000436404
  gene symbol: CNGA3
  hgvsc: ENST00000436404.2:c.*50G>A
  variant of: http://identifiers.org/hgnc/2150
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16643
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6518
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-99136466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136466
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136466
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 25980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.774C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-46C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16509
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28958
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6655
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-99136477-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136477
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136477
    reference: chr 2
allele count: 1
allele frequency: 3.818251240931653e-5
allele num: 26190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.785C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-35C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4053
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

2-99136478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136478
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136478
    reference: chr 2
allele count: 4
allele frequency: 1.520565650421957e-4
allele num: 26306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.786G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-34G>A
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22496
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-99136484-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136484
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136484
    reference: chr 2
allele count: 24
allele frequency: 8.973304419352426e-4
allele num: 26746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-28C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.792C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22102
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23891
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21001
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

2-99136491-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136491
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136491
    reference: chr 2
allele count: 52
allele frequency: 1.890634089586969e-3
allele num: 27504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.799C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-21C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25742
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4068
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22420
  bin: 2.25e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-99136503-AATGACATC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136503
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136495
    reference: chr 2
allele count: 1
allele frequency: 3.40901343151292e-5
allele num: 29334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.818_825delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-2_6delTCATGACA
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14293
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: AATGACATC
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

2-99136504-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136504
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136504
    reference: chr 2
allele count: 1
allele frequency: 3.405762550234998e-5
allele num: 29362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.812A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.-8A>G
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

2-99136536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136536
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136536
    reference: chr 2
allele count: 3
allele frequency: 9.174873080922381e-5
allele num: 32698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.25C>T
  hgvsp: ENSP00000427722.1:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.25C>T
  hgvsp: ENSP00000387294.3:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.25C>T
  hgvsp: ENSP00000442149.1:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.25C>T
  hgvsp: ENSP00000386329.1:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.25C>T
  hgvsp: ENSP00000386704.3:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.25C>T
  hgvsp: ENSP00000074304.5:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.25C>T
  hgvsp: ENSP00000386777.3:p.Arg9Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.844C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg9Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-99136537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136537
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136537
    reference: chr 2
allele count: 1
allele frequency: 3.062224399804018e-5
allele num: 32656
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.26G>A
  hgvsp: ENSP00000074304.5:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.26G>A
  hgvsp: ENSP00000386329.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.26G>A
  hgvsp: ENSP00000387294.3:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.26G>A
  hgvsp: ENSP00000442149.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.845G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.26G>A
  hgvsp: ENSP00000386704.3:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.26G>A
  hgvsp: ENSP00000427722.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.26G>A
  hgvsp: ENSP00000386777.3:p.Arg9His
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg9His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-99136538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136538
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136538
    reference: chr 2
allele count: 2
allele frequency: 6.083095078776081e-5
allele num: 32878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.27C>T
  hgvsp: ENST00000545415.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.27C>T
  hgvsp: ENST00000409463.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.27C>T
  hgvsp: ENST00000074304.5:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.846C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.27C>T
  hgvsp: ENST00000523221.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.27C>T
  hgvsp: ENST00000409851.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.27C>T
  hgvsp: ENST00000409540.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.27C>T
  hgvsp: ENST00000409016.4:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33159
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32061
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg9Arg
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

2-99136554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136554
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136554
    reference: chr 2
allele count: 1
allele frequency: 3.107520198881293e-5
allele num: 32180
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.862C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.43C>T
  hgvsp: ENSP00000074304.5:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.43C>T
  hgvsp: ENSP00000427722.1:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.43C>T
  hgvsp: ENSP00000387294.3:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.43C>T
  hgvsp: ENSP00000386329.1:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.43C>T
  hgvsp: ENSP00000386704.3:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.43C>T
  hgvsp: ENSP00000442149.1:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.43C>T
  hgvsp: ENSP00000386777.3:p.Arg15Cys
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30816
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg15Cys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

2-99136555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136555
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136555
    reference: chr 2
allele count: 5
allele frequency: 1.566710534561635e-4
allele num: 31914
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.44G>A
  hgvsp: ENSP00000387294.3:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.44G>A
  hgvsp: ENSP00000386777.3:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.44G>A
  hgvsp: ENSP00000386329.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.44G>A
  hgvsp: ENSP00000427722.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.44G>A
  hgvsp: ENSP00000074304.5:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.44G>A
  hgvsp: ENSP00000386704.3:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.863G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.44G>A
  hgvsp: ENSP00000442149.1:p.Arg15His
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg15His
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

2-99136561-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136561
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136561
    reference: chr 2
allele count: 2
allele frequency: 6.383250351078769e-5
allele num: 31332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.50T>C
  hgvsp: ENSP00000442149.1:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.50T>C
  hgvsp: ENSP00000386329.1:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.50T>C
  hgvsp: ENSP00000387294.3:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.50T>C
  hgvsp: ENSP00000074304.5:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.50T>C
  hgvsp: ENSP00000427722.1:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.50T>C
  hgvsp: ENSP00000386777.3:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.869T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.50T>C
  hgvsp: ENSP00000386704.3:p.Met17Thr
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15066
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met17Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-99136566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136566
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136566
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 30692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.55C>T
  hgvsp: ENSP00000386777.3:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.55C>T
  hgvsp: ENSP00000386329.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.55C>T
  hgvsp: ENSP00000387294.3:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.874C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.55C>T
  hgvsp: ENSP00000386704.3:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.55C>T
  hgvsp: ENSP00000442149.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.55C>T
  hgvsp: ENSP00000074304.5:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.55C>T
  hgvsp: ENSP00000427722.1:p.Arg19Trp
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg19Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

2-99136567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136567
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136567
    reference: chr 2
allele count: 2
allele frequency: 6.486346241162354e-5
allele num: 30834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.875G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.56G>A
  hgvsp: ENSP00000442149.1:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.56G>A
  hgvsp: ENSP00000427722.1:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.56G>A
  hgvsp: ENSP00000386704.3:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.56G>A
  hgvsp: ENSP00000074304.5:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.56G>A
  hgvsp: ENSP00000386329.1:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.56G>A
  hgvsp: ENSP00000386777.3:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.56G>A
  hgvsp: ENSP00000387294.3:p.Arg19Gln
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27861
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4050
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg19Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-99136575-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136575
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136575
    reference: chr 2
allele count: 6
allele frequency: 2.051702913418137e-4
allele num: 29244
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.64A>G
  hgvsp: ENSP00000074304.5:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.64A>G
  hgvsp: ENSP00000387294.3:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.64A>G
  hgvsp: ENSP00000386329.1:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.64A>G
  hgvsp: ENSP00000386704.3:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.883A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.64A>G
  hgvsp: ENSP00000386777.3:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.64A>G
  hgvsp: ENSP00000427722.1:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.64A>G
  hgvsp: ENSP00000442149.1:p.Thr22Ala
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24324
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr22Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

2-99136580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136580
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136580
    reference: chr 2
allele count: 1
allele frequency: 3.580892358375707e-5
allele num: 27926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.69C>T
  hgvsp: ENST00000409540.3:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.888C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.69C>T
  hgvsp: ENST00000409016.4:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.69C>T
  hgvsp: ENST00000523221.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.69C>T
  hgvsp: ENST00000409463.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.69C>T
  hgvsp: ENST00000074304.5:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.69C>T
  hgvsp: ENST00000545415.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.69C>T
  hgvsp: ENST00000409851.3:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22045
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile23Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP

2-99136581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136581
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136581
    reference: chr 2
allele count: 1
allele frequency: 3.598934715324264e-5
allele num: 27786
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.70G>A
  hgvsp: ENSP00000074304.5:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.70G>A
  hgvsp: ENSP00000442149.1:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.889G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.70G>A
  hgvsp: ENSP00000386704.3:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.70G>A
  hgvsp: ENSP00000386777.3:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.70G>A
  hgvsp: ENSP00000386329.1:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.70G>A
  hgvsp: ENSP00000387294.3:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.70G>A
  hgvsp: ENSP00000427722.1:p.Asp24Asn
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21817
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp24Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

2-99136583-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136583
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136583
    reference: chr 2
allele count: 1
allele frequency: 3.726615487813968e-5
allele num: 26834
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.891C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.72C>T
  hgvsp: ENST00000523221.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.72C>T
  hgvsp: ENST00000409540.3:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.72C>T
  hgvsp: ENST00000409851.3:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.72C>T
  hgvsp: ENST00000074304.5:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.72C>T
  hgvsp: ENST00000409463.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.72C>T
  hgvsp: ENST00000409016.4:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.72C>T
  hgvsp: ENST00000545415.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4048
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24326
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp24Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

2-99136584-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136584
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136584
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 26876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.73G>T
  hgvsp: ENSP00000074304.5:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.73G>T
  hgvsp: ENSP00000386777.3:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.73G>T
  hgvsp: ENSP00000386704.3:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.892G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.73G>T
  hgvsp: ENSP00000442149.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.73G>T
  hgvsp: ENSP00000387294.3:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.73G>T
  hgvsp: ENSP00000386329.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.73G>T
  hgvsp: ENSP00000427722.1:p.Val25Leu
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24447
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val25Leu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-99136588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136588
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136588
    reference: chr 2
allele count: 1
allele frequency: 3.84201629014907e-5
allele num: 26028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.77C>T
  hgvsp: ENSP00000386329.1:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.77C>T
  hgvsp: ENSP00000386704.3:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.77C>T
  hgvsp: ENSP00000074304.5:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.77C>T
  hgvsp: ENSP00000387294.3:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.77C>T
  hgvsp: ENSP00000427722.1:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.77C>T
  hgvsp: ENSP00000442149.1:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.896C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.77C>T
  hgvsp: ENSP00000386777.3:p.Ala26Val
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19430
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala26Val
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/2-99136591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136591
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136591
    reference: chr 2
allele count: 1
allele frequency: 3.904419803217242e-5
allele num: 25612
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.80C>A
  hgvsp: ENSP00000074304.5:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.80C>A
  hgvsp: ENSP00000386329.1:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.80C>A
  hgvsp: ENSP00000386704.3:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.80C>A
  hgvsp: ENSP00000386777.3:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.80C>A
  hgvsp: ENSP00000427722.1:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.899C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.80C>A
  hgvsp: ENSP00000387294.3:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.80C>A
  hgvsp: ENSP00000442149.1:p.Ala27Asp
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27029
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18492
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala27Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-99136592-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136592
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136592
    reference: chr 2
allele count: 2
allele frequency: 7.858546168958742e-5
allele num: 25450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.81C>T
  hgvsp: ENST00000409016.4:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.81C>T
  hgvsp: ENST00000409540.3:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.81C>T
  hgvsp: ENST00000074304.5:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.81C>T
  hgvsp: ENST00000523221.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.81C>T
  hgvsp: ENST00000409463.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.81C>T
  hgvsp: ENST00000409851.3:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.900C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.81C>T
  hgvsp: ENST00000545415.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27349
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18198
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26978
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala27Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

2-99136593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136593
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136593
    reference: chr 2
allele count: 1
allele frequency: 3.983111606787222e-5
allele num: 25106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.82G>A
  hgvsp: ENSP00000386704.3:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.82G>A
  hgvsp: ENSP00000442149.1:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.82G>A
  hgvsp: ENSP00000387294.3:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.82G>A
  hgvsp: ENSP00000386329.1:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.82G>A
  hgvsp: ENSP00000386777.3:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.82G>A
  hgvsp: ENSP00000074304.5:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.901G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.82G>A
  hgvsp: ENSP00000427722.1:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17547
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27463
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp28Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

2-99136603-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136603
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136603
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 23990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.92G>A
  hgvsp: ENSP00000386329.1:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.92G>A
  hgvsp: ENSP00000386704.3:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.92G>A
  hgvsp: ENSP00000386777.3:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.911G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.92G>A
  hgvsp: ENSP00000387294.3:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.92G>A
  hgvsp: ENSP00000074304.5:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.92G>A
  hgvsp: ENSP00000442149.1:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.92G>A
  hgvsp: ENSP00000427722.1:p.Gly31Asp
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30748
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly31Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

2-99136614-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136614
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136614
    reference: chr 2
allele count: 1
allele frequency: 4.368338284116722e-5
allele num: 22892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.103G>A
  hgvsp: ENSP00000386704.3:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.103G>A
  hgvsp: ENSP00000442149.1:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.103G>A
  hgvsp: ENSP00000074304.5:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.103G>A
  hgvsp: ENSP00000387294.3:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.103G>A
  hgvsp: ENSP00000427722.1:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.922G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.103G>A
  hgvsp: ENSP00000386329.1:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.103G>A
  hgvsp: ENSP00000386777.3:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32481
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala35Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-99136627-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136627
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136626
    reference: chr 2
allele count: 1
allele frequency: 4.639940608760208e-5
allele num: 21552
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.925+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.106+11delC
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34905
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33505
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

2-99136629-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136629
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136629
    reference: chr 2
allele count: 1
allele frequency: 4.691311690748734e-5
allele num: 21316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.925+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.106+12A>G
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34986
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33376
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-99136640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136640
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136640
    reference: chr 2
allele count: 1
allele frequency: 5.019072475406545e-5
allele num: 19924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.925+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.106+23C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34790
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4213
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-99136641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99136641
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99136641
    reference: chr 2
allele count: 46
allele frequency: 2.315980263820361e-3
allele num: 19862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.925+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.106+24G>A
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34709
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4062
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30734
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.25e1
  variant carriers: 5
num of homozygotes: 2
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

2-99137115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99137115
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99137115
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 20784
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.926-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.107-35A>G
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29248
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4563
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-99137131-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99137131
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99137131
    reference: chr 2
allele count: 1
allele frequency: 4.771447657219201e-5
allele num: 20958
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.926-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.107-19T>C
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-99137172-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99137172
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99137172
    reference: chr 2
allele count: 1
allele frequency: 4.600239212439047e-5
allele num: 21738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.129G>A
  hgvsp: ENST00000545415.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.129G>A
  hgvsp: ENST00000074304.5:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.129G>A
  hgvsp: ENST00000523221.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.129G>A
  hgvsp: ENST00000409463.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.129G>A
  hgvsp: ENST00000409016.4:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.129G>A
  hgvsp: ENST00000409540.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.948G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.129G>A
  hgvsp: ENST00000409851.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu43Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-99137187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99137187
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99137187
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 21554
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.144T>C
  hgvsp: ENST00000545415.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.144T>C
  hgvsp: ENST00000523221.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.144T>C
  hgvsp: ENST00000074304.5:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.144T>C
  hgvsp: ENST00000409540.3:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.144T>C
  hgvsp: ENST00000409016.4:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.144T>C
  hgvsp: ENST00000409851.3:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.963T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.144T>C
  hgvsp: ENST00000409463.1:c.144T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31841
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe48Phe
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-99137219-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99137219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99137219
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 19480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000040933
  ensembl transcript: ENST00000463367
  gene symbol: INPP4A
  hgvsc: ENST00000463367.1:n.995G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.151+25G>C
  variant of: http://identifiers.org/hgnc/6074
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29626
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

2-99149790-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149790
    reference: chr 2
allele count: 1
allele frequency: 8.532714427113554e-6
allele num: 117196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-50T>C
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12041
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

2-99149795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149795
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149795
    reference: chr 2
allele count: 4
allele frequency: 3.409827121764926e-5
allele num: 117308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-45G>A
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16393
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6632
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

2-99149807-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149806
    reference: chr 2
allele count: 1
allele frequency: 8.470556346140815e-6
allele num: 118056
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-31delG
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20651
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: AG
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

2-99149813-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149813
    reference: chr 2
allele count: 390
allele frequency: 3.286203003083975e-3
allele num: 118678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-27C>G
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 23044
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7843
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 8
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

2-99149813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149813
    reference: chr 2
allele count: 8
allele frequency: 6.740929237095334e-5
allele num: 118678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-27C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9666
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/2-99149818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149818
    reference: chr 2
allele count: 2
allele frequency: 1.677176975714477e-5
allele num: 119248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-22C>A
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23729
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9464
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-99149818-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149818
    reference: chr 2
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-22C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4166
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

2-99149822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149822
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149822
    reference: chr 2
allele count: 1
allele frequency: 8.367220576668843e-6
allele num: 119514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-18C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9473
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8132
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3799
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-99149824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149824
    reference: chr 2
allele count: 5
allele frequency: 4.179344010164164e-5
allele num: 119636
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-16C>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

2-99149834-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149834
    reference: chr 2
allele count: 1
allele frequency: 8.321959988016378e-6
allele num: 120164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-6C>G
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9638
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23650
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 8.75e1
  variant carriers: 0
hgvs: c.152-6C>G
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

2-99149836-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149836
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149836
    reference: chr 2
allele count: 1
allele frequency: 8.316561600771776e-6
allele num: 120242
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.152-4G>C
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9532
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
hgvs: c.152-4G>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

2-99149847-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149847
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149847
    reference: chr 2
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.159T>C
  hgvsp: ENST00000545415.1:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.159T>C
  hgvsp: ENST00000409851.3:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.159T>C
  hgvsp: ENST00000409463.1:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.159T>C
  hgvsp: ENST00000074304.5:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.159T>C
  hgvsp: ENST00000523221.1:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.159T>C
  hgvsp: ENST00000409016.4:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.159T>C
  hgvsp: ENST00000409540.3:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser53Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-99149864-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149864
    reference: chr 2
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.176C>G
  hgvsp: ENSP00000074304.5:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.176C>G
  hgvsp: ENSP00000427722.1:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.176C>G
  hgvsp: ENSP00000386329.1:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.176C>G
  hgvsp: ENSP00000387294.3:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.176C>G
  hgvsp: ENSP00000442149.1:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.176C>G
  hgvsp: ENSP00000386704.3:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.176C>G
  hgvsp: ENSP00000386777.3:p.Ser59Trp
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9560
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser59Trp
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

2-99149864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149864
    reference: chr 2
allele count: 7
allele frequency: 5.799887316474995e-5
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.176C>T
  hgvsp: ENSP00000386777.3:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.176C>T
  hgvsp: ENSP00000442149.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.176C>T
  hgvsp: ENSP00000386329.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.176C>T
  hgvsp: ENSP00000074304.5:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.176C>T
  hgvsp: ENSP00000386704.3:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.176C>T
  hgvsp: ENSP00000427722.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.176C>T
  hgvsp: ENSP00000387294.3:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9560
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser59Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

2-99149865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149865
    reference: chr 2
allele count: 2
allele frequency: 1.657028285472833e-5
allele num: 120698
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.177G>A
  hgvsp: ENST00000074304.5:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.177G>A
  hgvsp: ENST00000409851.3:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.177G>A
  hgvsp: ENST00000523221.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.177G>A
  hgvsp: ENST00000409540.3:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.177G>A
  hgvsp: ENST00000409463.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.177G>A
  hgvsp: ENST00000409016.4:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.177G>A
  hgvsp: ENST00000545415.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9561
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser59Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-99149868-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149868
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149868
    reference: chr 2
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.180A>T
  hgvsp: ENST00000409463.1:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.180A>T
  hgvsp: ENST00000074304.5:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.180A>T
  hgvsp: ENST00000409540.3:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.180A>T
  hgvsp: ENST00000545415.1:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.180A>T
  hgvsp: ENST00000409016.4:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.180A>T
  hgvsp: ENST00000409851.3:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.180A>T
  hgvsp: ENST00000523221.1:c.180A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu60Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-99149869-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149869
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149869
    reference: chr 2
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.181G>C
  hgvsp: ENSP00000074304.5:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.181G>C
  hgvsp: ENSP00000387294.3:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.181G>C
  hgvsp: ENSP00000386777.3:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.181G>C
  hgvsp: ENSP00000386329.1:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.181G>C
  hgvsp: ENSP00000442149.1:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.181G>C
  hgvsp: ENSP00000427722.1:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.181G>C
  hgvsp: ENSP00000386704.3:p.Asp61His
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp61His
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-99149872-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149872
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149872
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.184C>G
  hgvsp: ENSP00000386777.3:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.184C>G
  hgvsp: ENSP00000386704.3:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.184C>G
  hgvsp: ENSP00000387294.3:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.184C>G
  hgvsp: ENSP00000442149.1:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.184C>G
  hgvsp: ENSP00000386329.1:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.184C>G
  hgvsp: ENSP00000074304.5:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.184C>G
  hgvsp: ENSP00000427722.1:p.Arg62Gly
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23969
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9565
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg62Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

2-99149872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149872
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149872
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.184C>T
  hgvsp: ENSP00000386704.3:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.184C>T
  hgvsp: ENSP00000386329.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.184C>T
  hgvsp: ENSP00000387294.3:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.184C>T
  hgvsp: ENSP00000427722.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.184C>T
  hgvsp: ENSP00000442149.1:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.184C>T
  hgvsp: ENSP00000386777.3:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.184C>T
  hgvsp: ENSP00000074304.5:p.Arg62Ter
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9565
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4330
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg62Ter
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-99149873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149873
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149873
    reference: chr 2
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.185G>A
  hgvsp: ENSP00000387294.3:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.185G>A
  hgvsp: ENSP00000442149.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.185G>A
  hgvsp: ENSP00000074304.5:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.185G>A
  hgvsp: ENSP00000427722.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.185G>A
  hgvsp: ENSP00000386329.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.185G>A
  hgvsp: ENSP00000386704.3:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.185G>A
  hgvsp: ENSP00000386777.3:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8403
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg62Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-99149881-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149881
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149881
    reference: chr 2
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.193A>C
  hgvsp: ENSP00000386704.3:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.193A>C
  hgvsp: ENSP00000074304.5:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.193A>C
  hgvsp: ENSP00000427722.1:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.193A>C
  hgvsp: ENSP00000387294.3:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.193A>C
  hgvsp: ENSP00000386329.1:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.193A>C
  hgvsp: ENSP00000442149.1:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.193A>C
  hgvsp: ENSP00000386777.3:p.Asn65His
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23976
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn65His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-99149883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149883
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149883
    reference: chr 2
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.195T>C
  hgvsp: ENST00000409463.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.195T>C
  hgvsp: ENST00000523221.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.195T>C
  hgvsp: ENST00000409851.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.195T>C
  hgvsp: ENST00000409540.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.195T>C
  hgvsp: ENST00000409016.4:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.195T>C
  hgvsp: ENST00000074304.5:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.195T>C
  hgvsp: ENST00000545415.1:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3897
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn65Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

2-99149891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149891
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149891
    reference: chr 2
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.203T>C
  hgvsp: ENSP00000442149.1:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.203T>C
  hgvsp: ENSP00000387294.3:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.203T>C
  hgvsp: ENSP00000386777.3:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.203T>C
  hgvsp: ENSP00000074304.5:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.203T>C
  hgvsp: ENSP00000386329.1:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.203T>C
  hgvsp: ENSP00000386704.3:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.203T>C
  hgvsp: ENSP00000427722.1:p.Val68Ala
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val68Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-99149894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149894
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149894
    reference: chr 2
allele count: 5
allele frequency: 4.140169581346052e-5
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.206C>T
  hgvsp: ENSP00000386704.3:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.206C>T
  hgvsp: ENSP00000386777.3:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.206C>T
  hgvsp: ENSP00000386329.1:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.206C>T
  hgvsp: ENSP00000387294.3:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.206C>T
  hgvsp: ENSP00000074304.5:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.206C>T
  hgvsp: ENSP00000427722.1:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.206C>T
  hgvsp: ENSP00000442149.1:p.Ala69Val
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4332
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala69Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-99149895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149895
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149895
    reference: chr 2
allele count: 6
allele frequency: 4.968203497615263e-5
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.207G>A
  hgvsp: ENST00000409463.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.207G>A
  hgvsp: ENST00000545415.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.207G>A
  hgvsp: ENST00000409016.4:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.207G>A
  hgvsp: ENST00000409540.3:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.207G>A
  hgvsp: ENST00000409851.3:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.207G>A
  hgvsp: ENST00000074304.5:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.207G>A
  hgvsp: ENST00000523221.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala69Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

2-99149901-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149901
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149901
    reference: chr 2
allele count: 1
allele frequency: 8.280202036929701e-6
allele num: 120770
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.213T>C
  hgvsp: ENST00000074304.5:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.213T>C
  hgvsp: ENST00000523221.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.213T>C
  hgvsp: ENST00000409463.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.213T>C
  hgvsp: ENST00000409540.3:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.213T>C
  hgvsp: ENST00000545415.1:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.213T>C
  hgvsp: ENST00000409851.3:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.213T>C
  hgvsp: ENST00000409016.4:c.213T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser71Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

2-99149907-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149907
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149907
    reference: chr 2
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.219C>T
  hgvsp: ENST00000409016.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.219C>T
  hgvsp: ENST00000523221.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.219C>T
  hgvsp: ENST00000409851.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.219C>T
  hgvsp: ENST00000409540.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.219C>T
  hgvsp: ENST00000074304.5:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.219C>T
  hgvsp: ENST00000409463.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.219C>T
  hgvsp: ENST00000545415.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5411
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr73Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/2-99149910-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149910
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149910
    reference: chr 2
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.222C>A
  hgvsp: ENST00000409016.4:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.222C>A
  hgvsp: ENST00000074304.5:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.222C>A
  hgvsp: ENST00000409540.3:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.222C>A
  hgvsp: ENST00000545415.1:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.222C>A
  hgvsp: ENST00000409851.3:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.222C>A
  hgvsp: ENST00000409463.1:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.222C>A
  hgvsp: ENST00000523221.1:c.222C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr74Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-99149930-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149930
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149930
    reference: chr 2
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.242C>G
  hgvsp: ENSP00000387294.3:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.242C>G
  hgvsp: ENSP00000386704.3:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.242C>G
  hgvsp: ENSP00000074304.5:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+11C>G
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.242C>G
  hgvsp: ENSP00000427722.1:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.242C>G
  hgvsp: ENSP00000442149.1:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.242C>G
  hgvsp: ENSP00000386777.3:p.Thr81Arg
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9592
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr81Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-99149930-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149930
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149930
    reference: chr 2
allele count: 12
allele frequency: 9.937229831563955e-5
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.242C>T
  hgvsp: ENSP00000442149.1:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.242C>T
  hgvsp: ENSP00000386777.3:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.242C>T
  hgvsp: ENSP00000386704.3:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.242C>T
  hgvsp: ENSP00000387294.3:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.242C>T
  hgvsp: ENSP00000074304.5:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+11C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.242C>T
  hgvsp: ENSP00000427722.1:p.Thr81Met
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15331
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr81Met
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-99149934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149934
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149934
    reference: chr 2
allele count: 11
allele frequency: 9.1089764822789e-5
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.246G>A
  hgvsp: ENST00000074304.5:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.246G>A
  hgvsp: ENST00000409851.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+15G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.246G>A
  hgvsp: ENST00000409016.4:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.246G>A
  hgvsp: ENST00000409540.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.246G>A
  hgvsp: ENST00000523221.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.246G>A
  hgvsp: ENST00000545415.1:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5411
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys82Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-99149939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149939
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149939
    reference: chr 2
allele count: 8
allele frequency: 6.625039336171058e-5
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+20C>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.251C>T
  hgvsp: ENSP00000386777.3:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.251C>T
  hgvsp: ENSP00000386704.3:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.251C>T
  hgvsp: ENSP00000427722.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.251C>T
  hgvsp: ENSP00000442149.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.251C>T
  hgvsp: ENSP00000387294.3:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.251C>T
  hgvsp: ENSP00000074304.5:p.Ala84Val
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala84Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

2-99149946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149946
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149946
    reference: chr 2
allele count: 30078
allele frequency: 2.49221132175527e-1
allele num: 120688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.258G>A
  hgvsp: ENST00000409851.3:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+27G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.258G>A
  hgvsp: ENST00000545415.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.258G>A
  hgvsp: ENST00000409540.3:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.258G>A
  hgvsp: ENST00000074304.5:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.258G>A
  hgvsp: ENST00000523221.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.258G>A
  hgvsp: ENST00000409016.4:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.75e1
  variant carriers: 604
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 8.25e1
  variant carriers: 1722
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.75e1
  variant carriers: 1668
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 13299
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 12295
  bin: 9.75e1
  variant carriers: 11832
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 9.25e1
  variant carriers: 1730
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 5.25e1
  variant carriers: 794
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 457
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 6.75e1
  variant carriers: 1323
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 8.75e1
  variant carriers: 1756
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 5.75e1
  variant carriers: 919
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.75e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 6.25e1
  variant carriers: 1063
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 1495
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 7.75e1
  variant carriers: 10
hgvs: p.Thr86Thr
num of homozygotes: 4078
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-99149982-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149982
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149982
    reference: chr 2
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+63G>T
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.270+24G>T
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5191
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ

2-99149983-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149983
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149982
    reference: chr 2
allele count: 2
allele frequency: 1.658759911090469e-5
allele num: 120572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+68delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.270+29delG
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14377
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5188
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: AG
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

2-99149987-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 99149987
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 99149987
    reference: chr 2
allele count: 1
allele frequency: 8.297653423611802e-6
allele num: 120516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000387294
  ensembl transcript: ENST00000409540
  gene symbol: INPP4A
  hgvsc: ENST00000409540.3:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386777
  ensembl transcript: ENST00000409851
  gene symbol: INPP4A
  hgvsc: ENST00000409851.3:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386704
  ensembl transcript: ENST00000409016
  gene symbol: INPP4A
  hgvsc: ENST00000409016.4:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000427722
  ensembl transcript: ENST00000523221
  gene symbol: INPP4A
  hgvsc: ENST00000523221.1:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000074304
  ensembl transcript: ENST00000074304
  gene symbol: INPP4A
  hgvsc: ENST00000074304.5:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000386329
  ensembl transcript: ENST00000409463
  gene symbol: INPP4A
  hgvsc: ENST00000409463.1:c.231+68G>A
  variant of: http://identifiers.org/hgnc/6074
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000040933
  ensembl protein: ENSP00000442149
  ensembl transcript: ENST00000545415
  gene symbol: INPP4A
  hgvsc: ENST00000545415.1:c.270+29G>A
  variant of: http://identifiers.org/hgnc/6074
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 869
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 270
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.624929688378895e-5
allele num: 53334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.097935880544576e-4
allele num: 9108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.437607820586544e-4
allele num: 6956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.023666e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.343e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

GenotypeQuality
all individuals: 1036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6990
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.204e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 6.41866e5

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5452
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.660322108345535e-4
allele num: 2732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

MQ
type: SiteQuality
SIO_000300: 5.899e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.24e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

DP
type: SiteQuality
SIO_000300: 6.63763e5

FS
type: SiteQuality
SIO_000300: 1.935e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.5e-4
allele num: 8000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.671122994652406e-4
allele num: 11968
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.14e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

DP
type: SiteQuality
SIO_000300: 6.67812e5

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 4078
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2854
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17463
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1246
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 3

South Asian
type: Population
allele count: 5
allele frequency: 6.218905472636816e-4
allele num: 8040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1850
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.496503496503497e-3
allele num: 286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 1.973684210526316e-2
allele num: 912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2796
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.02e0

FS
type: SiteQuality
SIO_000300: 6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 1.177e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.87602e5

GenotypeQuality
all individuals: 210
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1090
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2503
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4090
bin: 9.75e1
variant carriers: 47

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 18412
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 639
bin: 7.75e1
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2860
num of homozygotes: 0

East Asian
type: Population
allele count: 51
allele frequency: 4.838709677419355e-2
allele num: 1054
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.326259946949602e-3
allele num: 754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8064
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

FS
type: SiteQuality
SIO_000300: 5.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 7.13537e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

GenotypeQuality
all individuals: 28262
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1914
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.038585209003215e-4
allele num: 1244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13766
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.485e1

FS
type: SiteQuality
SIO_000300: 1.697e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.532e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

DP
type: SiteQuality
SIO_000300: 7.49345e5

QD
type: SiteQuality
SIO_000300: 4.08e0

GenotypeQuality
all individuals: 482
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4050
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.287310979618672e-4
allele num: 3042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.50921e5

VQSLOD
type: SiteQuality
SIO_000300: -6.558e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

GenotypeQuality
all individuals: 618
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10257
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31926
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 630
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.411900487304436e-5
allele num: 15596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1426
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.385496183206107e-4
allele num: 8384
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

FS
type: SiteQuality
SIO_000300: 2.966e0

DP
type: SiteQuality
SIO_000300: 7.88354e5

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2547
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.425083526085839e-5
allele num: 15564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.158e0

DP
type: SiteQuality
SIO_000300: 7.87206e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 7.93e0

GenotypeQuality
all individuals: 890
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.12739571589628e-3
allele num: 1774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: -3.04e-2

FS
type: SiteQuality
SIO_000300: 7.369e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

QD
type: SiteQuality
SIO_000300: 1.198e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 7.87584e5

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.535947712418301e-5
allele num: 15300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.65925e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.647253474520185e-4
allele num: 15110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.257623554153522e-4
allele num: 1902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

FS
type: SiteQuality
SIO_000300: 6.129e0

DP
type: SiteQuality
SIO_000300: 7.6154e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.337e1

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 613
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GenotypeQuality
all individuals: 501
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GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 518
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GenotypeQuality
all individuals: 4048
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.352996888107157e-4
allele num: 14782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.963e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

DP
type: SiteQuality
SIO_000300: 7.47372e5

FS
type: SiteQuality
SIO_000300: 2.636e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 1382
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 2.5e0
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GenotypeQuality
all individuals: 99
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1546
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.37173e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 3851
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2022
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variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
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variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.378169790518192e-4
allele num: 14512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3058
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.37096e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.854e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.059137178865729e-4
allele num: 8252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.246376811594203e-4
allele num: 1380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13644
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.81e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.245e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.276e0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 7.05546e5

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 22890
bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19437
bin: 2.25e1
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GenotypeQuality
all individuals: 2875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.747133560582585e-5
allele num: 12908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.840000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 3.499e0

DP
type: SiteQuality
SIO_000300: 6.80855e5

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.223391240518718e-4
allele num: 8174
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1210
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

QD
type: SiteQuality
SIO_000300: 1.115e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.77566e5

VQSLOD
type: SiteQuality
SIO_000300: -3.499e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.152616990053807e-5
allele num: 12266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

DP
type: SiteQuality
SIO_000300: 6.64424e5

FS
type: SiteQuality
SIO_000300: 1.3565e1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ReadPosRankSum
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SIO_000300: -4.21e-1

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.53e-2

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8152
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12298
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.459e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

FS
type: SiteQuality
SIO_000300: 2.963e0

QD
type: SiteQuality
SIO_000300: 5.46e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 6.63733e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.451656524678837e-5
allele num: 11832
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.81e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.008e0

FS
type: SiteQuality
SIO_000300: 1.981e0

DP
type: SiteQuality
SIO_000300: 6.5155e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.62663906142167e-5
allele num: 11592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.4149e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 3.319e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.042e1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 1.738223535546671e-4
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.144e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.38266e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.829242450997704e-5
allele num: 11326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1326
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 916
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African
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Other
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allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Latino
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num of homozygotes: 0

ReadPosRankSum
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MQRankSum
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BaseQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 224
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.718213058419244e-3
allele num: 582
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 10032
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East Asian
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 5.77681e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 4.298e0

VQSLOD
type: SiteQuality
SIO_000300: -3.596e0

QD
type: SiteQuality
SIO_000300: 3.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.632e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 555
bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.256281407035176e-4
allele num: 7960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

DP
type: SiteQuality
SIO_000300: 5.37732e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 2.405e1

MQ
type: SiteQuality
SIO_000300: 6.091e1

GenotypeQuality
all individuals: 330
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.092418614813196e-4
allele num: 9154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 1.649e1

FS
type: SiteQuality
SIO_000300: 5.798e0

VQSLOD
type: SiteQuality
SIO_000300: -1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 5.31869e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31031
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 4046
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.672240802675585e-3
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7922
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.417e1

FS
type: SiteQuality
SIO_000300: 7.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.99439e5

GenotypeQuality
all individuals: 329
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 685
bin: 1.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 1

GenotypeQuality
all individuals: 540
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.17056856187291e-2
allele num: 598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.411381721726549e-4
allele num: 8294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

South Asian
type: Population
allele count: 37
allele frequency: 4.670537742994194e-3
allele num: 7922
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 4.98203e5

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

FS
type: SiteQuality
SIO_000300: 6.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3869
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 225
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
all individuals: 336
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GenotypeQuality
all individuals: 1595
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.96e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.88189e5

QD
type: SiteQuality
SIO_000300: 1.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.251e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.262626262626263e-4
allele num: 7920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.087e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

DP
type: SiteQuality
SIO_000300: 5.16469e5

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.902e0

VQSLOD
type: SiteQuality
SIO_000300: -1.784e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.051967178624027e-4
allele num: 9506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.31e-1

QD
type: SiteQuality
SIO_000300: 6.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

DP
type: SiteQuality
SIO_000300: 5.53512e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1360
bin: 9.75e1
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GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 5.24618e5

VQSLOD
type: SiteQuality
SIO_000300: -6.264e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.24e-2

MQ
type: SiteQuality
SIO_000300: 4.71e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 218
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GenotypeQuality
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 451
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GenotypeQuality
all individuals: 169
bin: 3.75e1
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GenotypeQuality
all individuals: 238
bin: 2.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.23485e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

QD
type: SiteQuality
SIO_000300: 1.03e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 9191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201923076923077e-4
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

DP
type: SiteQuality
SIO_000300: 1.645289e6

VQSLOD
type: SiteQuality
SIO_000300: -3.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 2.477e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65078
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.520478890989288e-4
allele num: 15870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.669252e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

QD
type: SiteQuality
SIO_000300: 1.567e1

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7608
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variant carriers: 0

GenotypeQuality
all individuals: 5020
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3996
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variant carriers: 0

GenotypeQuality
all individuals: 3605
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.062925170068027e-4
allele num: 9408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 7.77e0

MQ
type: SiteQuality
SIO_000300: 6.143e1

QD
type: SiteQuality
SIO_000300: 1.445e1

DP
type: SiteQuality
SIO_000300: 1.74443e6

GenotypeQuality
all individuals: 3692
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5127
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variant carriers: 1

GenotypeQuality
all individuals: 2628
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9666
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variant carriers: 379

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.598322290438272e-5
allele num: 65804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 361
allele frequency: 3.80240151674742e-2
allele num: 9494
num of homozygotes: 8

Latino
type: Population
allele count: 20
allele frequency: 1.758705592683785e-3
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.86799501867995e-4
allele num: 16060
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.625e1

DP
type: SiteQuality
SIO_000300: 1.776741e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

GenotypeQuality
all individuals: 1073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7843
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variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 739
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variant carriers: 0

GenotypeQuality
all individuals: 4080
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variant carriers: 0

GenotypeQuality
all individuals: 1921
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variant carriers: 0

GenotypeQuality
all individuals: 3692
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variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.034822370735139e-4
allele num: 11372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.625e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.17e-2

DP
type: SiteQuality
SIO_000300: 1.776741e6

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 22577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 319
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GenotypeQuality
all individuals: 5218
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2682
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045587620242576e-4
allele num: 9564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

DP
type: SiteQuality
SIO_000300: 1.789469e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.069e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1956
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variant carriers: 0

GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 2682
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variant carriers: 0

GenotypeQuality
all individuals: 821
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GenotypeQuality
all individuals: 3763
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045587620242576e-4
allele num: 9564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.133e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.069e1

DP
type: SiteQuality
SIO_000300: 1.789469e6

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1966
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GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 94
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 1.797278e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.462e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 3801
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GenotypeQuality
all individuals: 67
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9485
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 23160
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.041200990756963e-5
allele num: 66212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037129226301597e-4
allele num: 9642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 2.168e0

QD
type: SiteQuality
SIO_000300: 1.543e1

VQSLOD
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 1.801966e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
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GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 5340
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GenotypeQuality
all individuals: 8293
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GenotypeQuality
all individuals: 3842
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GenotypeQuality
all individuals: 315
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GenotypeQuality
all individuals: 34
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GenotypeQuality
all individuals: 9529
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.028594939312899e-4
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

QD
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MQRankSum
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DP
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VQSLOD
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SIO_000300: -9.946e-1

ClippingRankSum
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SIO_000300: 1.24e-1

MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 1.111e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.028171910343409e-4
allele num: 9726
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66482
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
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FS
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
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SIO_000300: -5.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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DP
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: 2.15e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.475e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049758555532228e-4
allele num: 66682
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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allele frequency: 0.0e0
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East Asian
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allele num: 8616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.976e1

BaseQRankSum
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SIO_000300: -3.475e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

DP
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SIO_000300: 1.820965e6

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.273e1

VQSLOD
type: SiteQuality
SIO_000300: 5.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

FS
type: SiteQuality
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MQRankSum
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SIO_000300: 7.71e-1

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
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Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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QD
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VQSLOD
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
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South Asian
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East Asian
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African
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MQRankSum
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FS
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ClippingRankSum
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QD
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VQSLOD
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.953e1

BaseQRankSum
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SIO_000300: 2.38e0

ReadPosRankSum
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SIO_000300: 7.91e-1

VQSLOD
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FS
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QD
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DP
type: SiteQuality
SIO_000300: 1.82191e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.03e0

DP
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MQ
type: SiteQuality
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QD
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FS
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InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

VQSLOD
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SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 2.109e0

ReadPosRankSum
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MQRankSum
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SIO_000300: 1.25e0

MQ
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DP
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SIO_000300: 1.822449e6

BaseQRankSum
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SIO_000300: -1.983e0

InbreedingCoeff
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SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.673e1

VQSLOD
type: SiteQuality
SIO_000300: -2.304e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.657e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.67e0

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.694e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

DP
type: SiteQuality
SIO_000300: 1.822599e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495324862143371e-5
allele num: 66736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.4e-3

MQ
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SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.266e1

FS
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.823272e6

BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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FS
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SIO_000300: 4.319e0

MQRankSum
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SIO_000300: -1.292e0

ReadPosRankSum
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MQ
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.823221e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.179e1

FS
type: SiteQuality
SIO_000300: 1.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

DP
type: SiteQuality
SIO_000300: 1.824311e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 23931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9592
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2746
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5413
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8411
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.048940570024275e-4
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.040399918384003e-4
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.176e0

DP
type: SiteQuality
SIO_000300: 1.824311e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.179e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

GenotypeQuality
all individuals: 3900
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9597
bin: 9.75e1
variant carriers: 11

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.275214467887781e-3
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.824971e6

FS
type: SiteQuality
SIO_000300: 1.156e0

QD
type: SiteQuality
SIO_000300: 1.191e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e-1

GenotypeQuality
all individuals: 5411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9601
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3899
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019783805833163e-4
allele num: 9806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049097775912715e-4
allele num: 66724
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

DP
type: SiteQuality
SIO_000300: 1.825072e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 2.197e1

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.718e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 3.446e0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 14111
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2319
bin: 8.25e1
variant carriers: 15

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1501
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31396
bin: 9.75e1
variant carriers: 25920

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 3

African
type: Population
allele count: 1100
allele frequency: 1.12176218641648e-1
allele num: 9806
num of homozygotes: 64

Latino
type: Population
allele count: 3435
allele frequency: 2.971967468420142e-1
allele num: 11558
num of homozygotes: 530

South Asian
type: Population
allele count: 4292
allele frequency: 2.600896860986547e-1
allele num: 16502
num of homozygotes: 646

Other
type: Population
allele count: 243
allele frequency: 2.7e-1
allele num: 900
num of homozygotes: 23

European (Finnish)
type: Population
allele count: 1323
allele frequency: 2.000907441016334e-1
allele num: 6612
num of homozygotes: 149

European (Non-Finnish)
type: Population
allele count: 17216
allele frequency: 2.580335731414868e-1
allele num: 66720
num of homozygotes: 2304

East Asian
type: Population
allele count: 2469
allele frequency: 2.874272409778812e-1
allele num: 8590
num of homozygotes: 362

VQSLOD
type: SiteQuality
SIO_000300: 6.64e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

DP
type: SiteQuality
SIO_000300: 3.597815e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.48e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

QD
type: SiteQuality
SIO_000300: 1.655e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
all individuals: 12940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.088761e6

FS
type: SiteQuality
SIO_000300: 5.006e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.258e0

QD
type: SiteQuality
SIO_000300: 3.77e0

MQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12941
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.088483e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 6.006e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

FS
type: SiteQuality
SIO_000300: 4.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

QD
type: SiteQuality
SIO_000300: 1.281e1