4-15529135-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529135
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529135
    reference: chr 4
allele count: 1
allele frequency: 8.902182815226294e-6
allele num: 112332
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1215A>G
  hgvsp: ENST00000424120.1:c.1215A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1068A>G
  hgvsp: ENST00000389652.5:c.1068A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1215A>G
  hgvsp: ENST00000503292.1:c.1215A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1215A>G
  hgvsp: ENST00000512702.1:c.1215A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1395A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1215A>G
  hgvsp: ENST00000413206.1:c.1215A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36235
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gln405Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/4-15529159-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529159
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529159
    reference: chr 4
allele count: 1
allele frequency: 8.962340246285111e-6
allele num: 111578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1239A>C
  hgvsp: ENSP00000398391.1:p.Leu413Phe
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1092A>C
  hgvsp: ENSP00000374303.5:p.Leu364Phe
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1239A>C
  hgvsp: ENSP00000422875.1:p.Leu413Phe
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1239A>C
  hgvsp: ENSP00000421809.1:p.Leu413Phe
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1419A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1239A>C
  hgvsp: ENSP00000403465.1:p.Leu413Phe
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu413Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

4-15529163-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529163
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529163
    reference: chr 4
allele count: 1
allele frequency: 8.978272580355539e-6
allele num: 111380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1243T>A
  hgvsp: ENSP00000422875.1:p.Phe415Ile
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1243T>A
  hgvsp: ENSP00000398391.1:p.Phe415Ile
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1096T>A
  hgvsp: ENSP00000374303.5:p.Phe366Ile
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1243T>A
  hgvsp: ENSP00000421809.1:p.Phe415Ile
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1243T>A
  hgvsp: ENSP00000403465.1:p.Phe415Ile
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1423T>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32631
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe415Ile
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-15529180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529180
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529180
    reference: chr 4
allele count: 1
allele frequency: 9.084467377677646e-6
allele num: 110078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1113T>A
  hgvsp: ENSP00000374303.5:p.Cys371Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1260T>A
  hgvsp: ENSP00000398391.1:p.Cys420Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1260T>A
  hgvsp: ENSP00000421809.1:p.Cys420Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1260T>A
  hgvsp: ENSP00000422875.1:p.Cys420Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1260T>A
  hgvsp: ENSP00000403465.1:p.Cys420Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1440T>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys420Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

4-15529183-T-TGGCATGTTTTGGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529183
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529196
    reference: chr 4
allele count: 1
allele frequency: 9.093554488578495e-6
allele num: 109968
alternate allele: TGGCATGTTTTGGC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsp: ENSP00000421809.1:p.Ser422GlyfsTer19
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsp: ENSP00000403465.1:p.Ser422GlyfsTer19
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsp: ENSP00000398391.1:p.Ser422GlyfsTer19
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsp: ENSP00000374303.5:p.Ser373GlyfsTer19
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsp: ENSP00000422875.1:p.Ser422GlyfsTer19
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser422GlyfsTer19
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-15529187-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529187
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529187
    reference: chr 4
allele count: 1
allele frequency: 9.126752336448597e-6
allele num: 109568
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1267C>T
  hgvsp: ENSP00000403465.1:p.Arg423Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1267C>T
  hgvsp: ENSP00000422875.1:p.Arg423Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1447C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1267C>T
  hgvsp: ENSP00000421809.1:p.Arg423Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1120C>T
  hgvsp: ENSP00000374303.5:p.Arg374Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1267C>T
  hgvsp: ENSP00000398391.1:p.Arg423Ter
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg423Ter
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

4-15529188-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529188
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529188
    reference: chr 4
allele count: 8
allele frequency: 7.308338814587444e-5
allele num: 109464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1448G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1268G>A
  hgvsp: ENSP00000398391.1:p.Arg423Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1268G>A
  hgvsp: ENSP00000421809.1:p.Arg423Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1268G>A
  hgvsp: ENSP00000422875.1:p.Arg423Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1268G>A
  hgvsp: ENSP00000403465.1:p.Arg423Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1121G>A
  hgvsp: ENSP00000374303.5:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32117
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2798
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8073
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg423Gln
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

4-15529189-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529189
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529189
    reference: chr 4
allele count: 1
allele frequency: 9.130585635762679e-6
allele num: 109522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1449A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1269A>G
  hgvsp: ENST00000512702.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1269A>G
  hgvsp: ENST00000503292.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1269A>G
  hgvsp: ENST00000413206.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1122A>G
  hgvsp: ENST00000389652.5:c.1122A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1269A>G
  hgvsp: ENST00000424120.1:c.1269A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg423Arg
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-15529190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529190
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529190
    reference: chr 4
allele count: 1
allele frequency: 9.14026653017202e-6
allele num: 109406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1123G>A
  hgvsp: ENSP00000374303.5:p.Glu375Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1270G>A
  hgvsp: ENSP00000398391.1:p.Glu424Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1270G>A
  hgvsp: ENSP00000421809.1:p.Glu424Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1270G>A
  hgvsp: ENSP00000422875.1:p.Glu424Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1450G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1270G>A
  hgvsp: ENSP00000403465.1:p.Glu424Lys
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu424Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

4-15529190-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529190
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529190
    reference: chr 4
allele count: 2
allele frequency: 1.828053306034404e-5
allele num: 109406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1123G>C
  hgvsp: ENSP00000374303.5:p.Glu375Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1270G>C
  hgvsp: ENSP00000421809.1:p.Glu424Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1270G>C
  hgvsp: ENSP00000422875.1:p.Glu424Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1270G>C
  hgvsp: ENSP00000398391.1:p.Glu424Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1450G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1270G>C
  hgvsp: ENSP00000403465.1:p.Glu424Gln
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37720
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8239
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu424Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-15529201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529201
    reference: chr 4
allele count: 1
allele frequency: 9.268355979016441e-6
allele num: 107894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1134G>A
  hgvsp: ENST00000389652.5:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1281G>A
  hgvsp: ENST00000512702.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1281G>A
  hgvsp: ENST00000503292.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1281G>A
  hgvsp: ENST00000424120.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1461G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1281G>A
  hgvsp: ENST00000413206.1:c.1281G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu427Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-15529209-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529209
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529209
    reference: chr 4
allele count: 1
allele frequency: 9.393199323689649e-6
allele num: 106460
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1289A>G
  hgvsp: ENSP00000403465.1:p.Lys430Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1142A>G
  hgvsp: ENSP00000374303.5:p.Lys381Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1289A>G
  hgvsp: ENSP00000421809.1:p.Lys430Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1469A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1289A>G
  hgvsp: ENSP00000398391.1:p.Lys430Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1289A>G
  hgvsp: ENSP00000422875.1:p.Lys430Arg
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys430Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

4-15529214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529214
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529214
    reference: chr 4
allele count: 2
allele frequency: 1.898361713840955e-5
allele num: 105354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1294G>A
  hgvsp: ENSP00000398391.1:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1294G>A
  hgvsp: ENSP00000421809.1:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1294G>A
  hgvsp: ENSP00000403465.1:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1147G>A
  hgvsp: ENSP00000374303.5:p.Ala383Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1474G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1294G>A
  hgvsp: ENSP00000422875.1:p.Ala432Thr
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30403
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala432Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-15529218-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529218
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529218
    reference: chr 4
allele count: 1
allele frequency: 9.576159194070442e-6
allele num: 104426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1298A>G
  hgvsp: ENSP00000422875.1:p.Gln433Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1151A>G
  hgvsp: ENSP00000374303.5:p.Gln384Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1478A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1298A>G
  hgvsp: ENSP00000403465.1:p.Gln433Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1298A>G
  hgvsp: ENSP00000421809.1:p.Gln433Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1298A>G
  hgvsp: ENSP00000398391.1:p.Gln433Arg
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln433Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

4-15529227-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529227
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529227
    reference: chr 4
allele count: 1
allele frequency: 9.865240810528185e-6
allele num: 101366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1307A>T
  hgvsp: ENSP00000421809.1:p.Asp436Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1160A>T
  hgvsp: ENSP00000374303.5:p.Asp387Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1307A>T
  hgvsp: ENSP00000398391.1:p.Asp436Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1307A>T
  hgvsp: ENSP00000422875.1:p.Asp436Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1307A>T
  hgvsp: ENSP00000403465.1:p.Asp436Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1487A>T
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9219
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp436Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

4-15529244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529244
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529244
    reference: chr 4
allele count: 2
allele frequency: 2.188902265513845e-5
allele num: 91370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1324C>T
  hgvsp: ENSP00000403465.1:p.His442Tyr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1177C>T
  hgvsp: ENSP00000374303.5:p.His393Tyr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.3C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1504C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1324C>T
  hgvsp: ENSP00000398391.1:p.His442Tyr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1324C>T
  hgvsp: ENSP00000422875.1:p.His442Tyr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1324C>T
  hgvsp: ENSP00000421809.1:p.His442Tyr
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20619
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His442Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

4-15529251-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529251
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529251
    reference: chr 4
allele count: 1
allele frequency: 1.210389987654022e-5
allele num: 82618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1511G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1331G>A
  hgvsp: ENSP00000421809.1:p.Arg444Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.10G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1331G>A
  hgvsp: ENSP00000422875.1:p.Arg444Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1184G>A
  hgvsp: ENSP00000374303.5:p.Arg395Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1331G>A
  hgvsp: ENSP00000398391.1:p.Arg444Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1331G>A
  hgvsp: ENSP00000403465.1:p.Arg444Lys
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6093
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg444Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

4-15529257-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529257
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529256
    reference: chr 4
allele count: 1
allele frequency: 1.23334977799704e-5
allele num: 81080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1339delG
  hgvsp: ENSP00000421809.1:p.Ala447ArgfsTer11
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1519delG
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1192delG
  hgvsp: ENSP00000374303.5:p.Ala398ArgfsTer11
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.18delG
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1339delG
  hgvsp: ENSP00000398391.1:p.Ala447ArgfsTer11
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1339delG
  hgvsp: ENSP00000422875.1:p.Ala447ArgfsTer11
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1339delG
  hgvsp: ENSP00000403465.1:p.Ala447ArgfsTer11
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala447ArgfsTer11
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: AG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

4-15529259-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529259
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529259
    reference: chr 4
allele count: 1
allele frequency: 1.256060491873289e-5
allele num: 79614
alternate allele: A
annotation: Annotation
  canonical: true
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1339G>A
  hgvsp: ENSP00000403465.1:p.Ala447Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1339G>A
  hgvsp: ENSP00000398391.1:p.Ala447Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1339G>A
  hgvsp: ENSP00000422875.1:p.Ala447Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1192G>A
  hgvsp: ENSP00000374303.5:p.Ala398Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1339G>A
  hgvsp: ENSP00000421809.1:p.Ala447Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1519G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  clinical significance: likely_pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.18G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala447Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-15529260-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529260
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529260
    reference: chr 4
allele count: 2
allele frequency: 2.547251515614652e-5
allele num: 78516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1340C>T
  hgvsp: ENSP00000398391.1:p.Ala447Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1340C>T
  hgvsp: ENSP00000422875.1:p.Ala447Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.19C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1520C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1193C>T
  hgvsp: ENSP00000374303.5:p.Ala398Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1340C>T
  hgvsp: ENSP00000403465.1:p.Ala447Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1340C>T
  hgvsp: ENSP00000421809.1:p.Ala447Val
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12803
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala447Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

4-15529261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529261
    reference: chr 4
allele count: 5
allele frequency: 6.442302736690203e-5
allele num: 77612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1194G>A
  hgvsp: ENST00000389652.5:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1341G>A
  hgvsp: ENST00000512702.1:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1341G>A
  hgvsp: ENST00000503292.1:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.20G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1341G>A
  hgvsp: ENST00000413206.1:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1341G>A
  hgvsp: ENST00000424120.1:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1521G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala447Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-15529278-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529278
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529278
    reference: chr 4
allele count: 1
allele frequency: 1.529472943623627e-5
allele num: 65382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1358A>C
  hgvsp: ENSP00000403465.1:p.Lys453Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1358A>C
  hgvsp: ENSP00000398391.1:p.Lys453Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1358A>C
  hgvsp: ENSP00000422875.1:p.Lys453Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.37A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1538A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1211A>C
  hgvsp: ENSP00000374303.5:p.Lys404Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1358A>C
  hgvsp: ENSP00000421809.1:p.Lys453Thr
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys453Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

4-15529279-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529279
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529279
    reference: chr 4
allele count: 1
allele frequency: 1.557632398753894e-5
allele num: 64200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38G>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359G>T
  hgvsp: ENSP00000422875.1:p.Lys453Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359G>T
  hgvsp: ENSP00000403465.1:p.Lys453Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539G>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359G>T
  hgvsp: ENSP00000398391.1:p.Lys453Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212G>T
  hgvsp: ENSP00000374303.5:p.Lys404Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359G>T
  hgvsp: ENSP00000421809.1:p.Lys453Asn
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2789
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys453Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-15529282-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529282
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529282
    reference: chr 4
allele count: 2
allele frequency: 3.226535024037686e-5
allele num: 61986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+3A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+3A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16809
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1359+3A>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

4-15529288-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529288
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529288
    reference: chr 4
allele count: 1
allele frequency: 1.764602082230457e-5
allele num: 56670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+9G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+9G>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2787
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

4-15529289-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529289
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529289
    reference: chr 4
allele count: 9
allele frequency: 1.634224288204532e-4
allele num: 55072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+10A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+10A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15856
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23137
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-15529293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529293
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529293
    reference: chr 4
allele count: 1
allele frequency: 1.909417245856564e-5
allele num: 52372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+14C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+14C>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23082
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-15529294-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529294
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529294
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 51554
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+15T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+15T>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-15529301-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529301
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529301
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 43482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+22A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+22A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23043
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-15529302-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529302
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529302
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 43506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+23T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+23T>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12603
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23105
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

4-15529303-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529303
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529303
    reference: chr 4
allele count: 9
allele frequency: 2.076986984214899e-4
allele num: 43332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+24G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+24G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23161
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

4-15529304-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529304
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529304
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 43376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+25A>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+25A>T
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD

4-15529305-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529305
    reference: chr 4
allele count: 53
allele frequency: 1.241275937983044e-3
allele num: 42698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+26T>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23190
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-15529317-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15529317
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15529317
    reference: chr 4
allele count: 1
allele frequency: 2.753758880872391e-5
allele num: 36314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1359+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.38+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1359+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1359+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1359+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1212+38T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1539+38T>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9534
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5995
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-15530201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530201
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530201
    reference: chr 4
allele count: 3
allele frequency: 2.55867903930131e-5
allele num: 117248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-42A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-42A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19131
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4844
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

4-15530204-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530204
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530204
    reference: chr 4
allele count: 1
allele frequency: 8.526893823118114e-6
allele num: 117276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-39G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-39G>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/4-15530218-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530218
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530218
    reference: chr 4
allele count: 1
allele frequency: 8.444804756114038e-6
allele num: 118416
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-25A>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-25A>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-15530232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530232
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530232
    reference: chr 4
allele count: 3
allele frequency: 2.501375756666166e-5
allele num: 119934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-11G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-11G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

4-15530234-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530234
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530234
    reference: chr 4
allele count: 1
allele frequency: 8.329585020074299e-6
allele num: 120054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-9C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-9C>T
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

4-15530235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530235
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530235
    reference: chr 4
allele count: 1
allele frequency: 8.322652595835345e-6
allele num: 120154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1360-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1360-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1213-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1360-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1540-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.39-8G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1360-8G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1360-8G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

4-15530261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530261
    reference: chr 4
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1378G>A
  hgvsp: ENSP00000398391.1:p.Ala460Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1378G>A
  hgvsp: ENSP00000403465.1:p.Ala460Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1378G>A
  hgvsp: ENSP00000422875.1:p.Ala460Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1558G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1378G>A
  hgvsp: ENSP00000421809.1:p.Ala460Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1231G>A
  hgvsp: ENSP00000374303.5:p.Ala411Thr
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.57G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala460Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

4-15530269-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530269
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530269
    reference: chr 4
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1239G>C
  hgvsp: ENSP00000374303.5:p.Gln413His
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1386G>C
  hgvsp: ENSP00000422875.1:p.Gln462His
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.65G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1386G>C
  hgvsp: ENSP00000403465.1:p.Gln462His
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1386G>C
  hgvsp: ENSP00000398391.1:p.Gln462His
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1386G>C
  hgvsp: ENSP00000421809.1:p.Gln462His
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1566G>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6144
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln462His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/4-15530275-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530275
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530275
    reference: chr 4
allele count: 4
allele frequency: 3.314825557305047e-5
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1245C>A
  hgvsp: ENST00000389652.5:c.1245C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1392C>A
  hgvsp: ENST00000512702.1:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1392C>A
  hgvsp: ENST00000413206.1:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1392C>A
  hgvsp: ENST00000424120.1:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1392C>A
  hgvsp: ENST00000503292.1:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1572C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.71C>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly464Gly
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-15530285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530285
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530285
    reference: chr 4
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1402G>A
  hgvsp: ENSP00000403465.1:p.Glu468Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1402G>A
  hgvsp: ENSP00000421809.1:p.Glu468Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.81G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1582G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1402G>A
  hgvsp: ENSP00000422875.1:p.Glu468Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1255G>A
  hgvsp: ENSP00000374303.5:p.Glu419Lys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1402G>A
  hgvsp: ENSP00000398391.1:p.Glu468Lys
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6140
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu468Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

4-15530285-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530285
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530285
    reference: chr 4
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1255G>C
  hgvsp: ENSP00000374303.5:p.Glu419Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.81G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1402G>C
  hgvsp: ENSP00000398391.1:p.Glu468Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1402G>C
  hgvsp: ENSP00000422875.1:p.Glu468Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1402G>C
  hgvsp: ENSP00000421809.1:p.Glu468Gln
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1582G>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1402G>C
  hgvsp: ENSP00000403465.1:p.Glu468Gln
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu468Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

4-15530292-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530292
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530292
    reference: chr 4
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1589C>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.88C>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1409C>G
  hgvsp: ENSP00000398391.1:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1262C>G
  hgvsp: ENSP00000374303.5:p.Pro421Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1409C>G
  hgvsp: ENSP00000421809.1:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1409C>G
  hgvsp: ENSP00000403465.1:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1409C>G
  hgvsp: ENSP00000422875.1:p.Pro470Arg
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro470Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ

4-15530305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530305
    reference: chr 4
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1602C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1422C>T
  hgvsp: ENST00000503292.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1275C>T
  hgvsp: ENST00000389652.5:c.1275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1422C>T
  hgvsp: ENST00000512702.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.101C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1422C>T
  hgvsp: ENST00000413206.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1422C>T
  hgvsp: ENST00000424120.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu474Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-15530306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530306
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530306
    reference: chr 4
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1603G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1423G>A
  hgvsp: ENSP00000403465.1:p.Asp475Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1423G>A
  hgvsp: ENSP00000422875.1:p.Asp475Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1276G>A
  hgvsp: ENSP00000374303.5:p.Asp426Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1423G>A
  hgvsp: ENSP00000398391.1:p.Asp475Asn
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.102G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1423G>A
  hgvsp: ENSP00000421809.1:p.Asp475Asn
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp475Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

4-15530308-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530308
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530308
    reference: chr 4
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1425T>C
  hgvsp: ENST00000424120.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.104T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1425T>C
  hgvsp: ENST00000413206.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1425T>C
  hgvsp: ENST00000512702.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1278T>C
  hgvsp: ENST00000389652.5:c.1278T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1605T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1425T>C
  hgvsp: ENST00000503292.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp475Asp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

4-15530308-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530308
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530308
    reference: chr 4
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1425T>G
  hgvsp: ENSP00000421809.1:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.104T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1425T>G
  hgvsp: ENSP00000403465.1:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1278T>G
  hgvsp: ENSP00000374303.5:p.Asp426Glu
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1425T>G
  hgvsp: ENSP00000422875.1:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1425T>G
  hgvsp: ENSP00000398391.1:p.Asp475Glu
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1605T>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp475Glu
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-15530309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530309
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530309
    reference: chr 4
allele count: 2
allele frequency: 1.658952537367906e-5
allele num: 120558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1606A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.105A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1279A>G
  hgvsp: ENSP00000374303.5:p.Thr427Ala
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1426A>G
  hgvsp: ENSP00000398391.1:p.Thr476Ala
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1426A>G
  hgvsp: ENSP00000422875.1:p.Thr476Ala
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1426A>G
  hgvsp: ENSP00000421809.1:p.Thr476Ala
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1426A>G
  hgvsp: ENSP00000403465.1:p.Thr476Ala
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29094
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr476Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-15530311-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530311
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530311
    reference: chr 4
allele count: 2
allele frequency: 1.659145208388638e-5
allele num: 120544
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1428C>T
  hgvsp: ENST00000503292.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1281C>T
  hgvsp: ENST00000389652.5:c.1281C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1428C>T
  hgvsp: ENST00000413206.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1428C>T
  hgvsp: ENST00000424120.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1608C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.107C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1428C>T
  hgvsp: ENST00000512702.1:c.1428C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr476Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-15530324-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530324
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530324
    reference: chr 4
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1294A>G
  hgvsp: ENSP00000374303.5:p.Ile432Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1621A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1441A>G
  hgvsp: ENSP00000398391.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1441A>G
  hgvsp: ENSP00000421809.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.120A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1441A>G
  hgvsp: ENSP00000403465.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1441A>G
  hgvsp: ENSP00000422875.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4982
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile481Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

4-15530327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530327
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530327
    reference: chr 4
allele count: 2
allele frequency: 1.664475107774763e-5
allele num: 120158
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1444A>G
  hgvsp: ENSP00000403465.1:p.Asn482Asp
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1444A>G
  hgvsp: ENSP00000422875.1:p.Asn482Asp
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1444A>G
  hgvsp: ENSP00000398391.1:p.Asn482Asp
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.123A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1624A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1297A>G
  hgvsp: ENSP00000374303.5:p.Asn433Asp
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1444A>G
  hgvsp: ENSP00000421809.1:p.Asn482Asp
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn482Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

4-15530334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530334
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530334
    reference: chr 4
allele count: 12
allele frequency: 1.0e-4
allele num: 120000
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1304A>G
  hgvsp: ENSP00000374303.5:p.Tyr435Cys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1451A>G
  hgvsp: ENSP00000403465.1:p.Tyr484Cys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.130A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1631A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1451A>G
  hgvsp: ENSP00000421809.1:p.Tyr484Cys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1451A>G
  hgvsp: ENSP00000422875.1:p.Tyr484Cys
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1451A>G
  hgvsp: ENSP00000398391.1:p.Tyr484Cys
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18708
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr484Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

4-15530338-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530338
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530338
    reference: chr 4
allele count: 2
allele frequency: 1.668947561667613e-5
allele num: 119836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1455A>G
  hgvsp: ENST00000413206.1:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1455A>G
  hgvsp: ENST00000512702.1:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1455A>G
  hgvsp: ENST00000424120.1:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1308A>G
  hgvsp: ENST00000389652.5:c.1308A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1455A>G
  hgvsp: ENST00000503292.1:c.1455A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1635A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.134A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys485Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-15530339-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530339
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530339
    reference: chr 4
allele count: 1
allele frequency: 8.353939717970996e-6
allele num: 119704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1456T>C
  hgvsp: ENSP00000398391.1:p.Ser486Pro
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1456T>C
  hgvsp: ENSP00000421809.1:p.Ser486Pro
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.135T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1309T>C
  hgvsp: ENSP00000374303.5:p.Ser437Pro
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1456T>C
  hgvsp: ENSP00000403465.1:p.Ser486Pro
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1456T>C
  hgvsp: ENSP00000422875.1:p.Ser486Pro
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1636T>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser486Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

4-15530341-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530341
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530341
    reference: chr 4
allele count: 1
allele frequency: 8.38335401227323e-6
allele num: 119284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1458T>A
  hgvsp: ENST00000512702.1:c.1458T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1458T>A
  hgvsp: ENST00000413206.1:c.1458T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1458T>A
  hgvsp: ENST00000424120.1:c.1458T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1311T>A
  hgvsp: ENST00000389652.5:c.1311T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1458T>A
  hgvsp: ENST00000503292.1:c.1458T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.137T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1638T>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser486Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-15530348-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530348
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530348
    reference: chr 4
allele count: 6
allele frequency: 5.049824939402101e-5
allele num: 118816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1318C>A
  hgvsp: ENST00000389652.5:c.1318C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1465C>A
  hgvsp: ENST00000413206.1:c.1465C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1645C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1465C>A
  hgvsp: ENST00000503292.1:c.1465C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1465C>A
  hgvsp: ENST00000512702.1:c.1465C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.144C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1465C>A
  hgvsp: ENST00000424120.1:c.1465C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1465C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-15530348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530348
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530348
    reference: chr 4
allele count: 4
allele frequency: 3.3665499596014e-5
allele num: 118816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.144C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1465C>T
  hgvsp: ENSP00000398391.1:p.Arg489Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1465C>T
  hgvsp: ENSP00000403465.1:p.Arg489Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1645C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1318C>T
  hgvsp: ENSP00000374303.5:p.Arg440Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1465C>T
  hgvsp: ENSP00000421809.1:p.Arg489Ter
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1465C>T
  hgvsp: ENSP00000422875.1:p.Arg489Ter
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg489Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-15530352-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530352
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530352
    reference: chr 4
allele count: 4
allele frequency: 3.377807802736024e-5
allele num: 118420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+3G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+3G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17802
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26994
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4980
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1466+3G>A
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

4-15530360-TTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530360
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530357
    reference: chr 4
allele count: 1
allele frequency: 8.526166805927391e-6
allele num: 117286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+14_1466+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+14_145+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+14_1466+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+14_1646+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+14_1466+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+14_1319+16delGTT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+14_1466+16delGTT
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: TTTG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

4-15530371-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530371
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530371
    reference: chr 4
allele count: 1
allele frequency: 8.644237751115106e-6
allele num: 115684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+22T>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+22T>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30521
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-15530372-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530372
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530372
    reference: chr 4
allele count: 1
allele frequency: 8.640801866413203e-6
allele num: 115730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+23A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+23A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30887
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

4-15530375-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530375
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530375
    reference: chr 4
allele count: 1
allele frequency: 8.666262241095416e-6
allele num: 115390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+26T>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+26T>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 842
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genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 253
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genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
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genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 18207
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 7535
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-15530377-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530377
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530377
    reference: chr 4
allele count: 1
allele frequency: 8.765932081558232e-6
allele num: 114078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+28C>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+28C>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 15458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7904
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4149
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 572
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

4-15530377-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530377
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530376
    reference: chr 4
allele count: 9
allele frequency: 7.889338873402409e-5
allele num: 114078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+35delT
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+35delT
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6604
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15458
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: CT
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

4-15530384-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530384
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530384
    reference: chr 4
allele count: 1
allele frequency: 8.805297266835728e-6
allele num: 113568
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+35T>C
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+35T>C
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11793
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4612
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5611
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

4-15530387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530387
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530387
    reference: chr 4
allele count: 8
allele frequency: 7.097483941942582e-5
allele num: 112716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+38C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+38C>T
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10576
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12936
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

4-15530388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15530388
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15530388
    reference: chr 4
allele count: 11
allele frequency: 9.78055980367749e-5
allele num: 112468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1466+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.145+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1646+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1466+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1466+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1319+39G>A
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1466+39G>A
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3557
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16717
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

4-15534768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15534768
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15534768
    reference: chr 4
allele count: 1
allele frequency: 8.800337932976626e-6
allele num: 113632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.146-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1467-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1467-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1647-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1467-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1467-48A>G
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1320-48A>G
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

4-15534771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15534771
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 15534771
    reference: chr 4
allele count: 2
allele frequency: 1.760036608761462e-5
allele num: 113634
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000398391
  ensembl transcript: ENST00000413206
  gene symbol: CC2D2A
  hgvsc: ENST00000413206.1:c.1467-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000374303
  ensembl transcript: ENST00000389652
  gene symbol: CC2D2A
  hgvsc: ENST00000389652.5:c.1320-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000510220
  gene symbol: CC2D2A
  hgvsc: ENST00000510220.1:n.146-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000422875
  ensembl transcript: ENST00000512702
  gene symbol: CC2D2A
  hgvsc: ENST00000512702.1:c.1467-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000421809
  ensembl transcript: ENST00000503292
  gene symbol: CC2D2A
  hgvsc: ENST00000503292.1:c.1467-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl transcript: ENST00000513811
  gene symbol: CC2D2A
  hgvsc: ENST00000513811.1:n.1647-45C>T
  variant of: http://identifiers.org/hgnc/29253
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000048342
  ensembl protein: ENSP00000403465
  ensembl transcript: ENST00000424120
  gene symbol: CC2D2A
  hgvsc: ENST00000424120.1:c.1467-45C>T
  variant of: http://identifiers.org/hgnc/29253
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18912
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4445
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1062
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 902
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5402
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597546169084287e-5
allele num: 62596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.065e1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.254e0

MQ
type: SiteQuality
SIO_000300: 5.805e1

FS
type: SiteQuality
SIO_000300: 9.034000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -2.979e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

DP
type: SiteQuality
SIO_000300: 1.39631e6

GenotypeQuality
all individuals: 316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.822213125938055e-5
allele num: 14658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8112
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.505e0

MQRankSum
type: SiteQuality
SIO_000300: -4.72e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.376437e6

VQSLOD
type: SiteQuality
SIO_000300: -1.726e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.821e1

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.826870562534134e-5
allele num: 14648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62064
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.657e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.192e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.252e1

DP
type: SiteQuality
SIO_000300: 1.374966e6

VQSLOD
type: SiteQuality
SIO_000300: 3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

GenotypeQuality
all individuals: 566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1575
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.915629322268326e-5
allele num: 14460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61424
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 1.008e1

FS
type: SiteQuality
SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 1.365426e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

GenotypeQuality
all individuals: 1465
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1577
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.629195177582274e-5
allele num: 61380
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.769e0

DP
type: SiteQuality
SIO_000300: 1.36417e6

MQ
type: SiteQuality
SIO_000300: 5.331e1

FS
type: SiteQuality
SIO_000300: 1.533e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 3.09e0

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 8045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
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variant carriers: 0

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 36936
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634521085322001e-5
allele num: 61180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.467e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

DP
type: SiteQuality
SIO_000300: 1.365215e6

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

QD
type: SiteQuality
SIO_000300: 1.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 801
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
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variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.272786777941417e-5
allele num: 61110
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.587253414264037e-4
allele num: 7908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

FS
type: SiteQuality
SIO_000300: 4.149e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.243e0

DP
type: SiteQuality
SIO_000300: 1.366157e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

GenotypeQuality
all individuals: 914
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 2791
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 37743
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635483448907497e-5
allele num: 61144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 1.271e0

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 1.364085e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 587
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GenotypeQuality
all individuals: 37720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 695
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637894323058276e-5
allele num: 61054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.363921e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.289e1

GenotypeQuality
all individuals: 941
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.275788646116552e-5
allele num: 61054
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

DP
type: SiteQuality
SIO_000300: 1.363921e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-1

FS
type: SiteQuality
SIO_000300: 3.479e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.646e0

QD
type: SiteQuality
SIO_000300: 1.289e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

GenotypeQuality
all individuals: 36718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
all individuals: 2791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.661405549094534e-5
allele num: 60190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 6.599e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.053e0

VQSLOD
type: SiteQuality
SIO_000300: -4.057e-1

DP
type: SiteQuality
SIO_000300: 1.350461e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQ
type: SiteQuality
SIO_000300: 5.94e1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14104
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.142595978062157e-4
allele num: 8752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7700
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.335838e6

VQSLOD
type: SiteQuality
SIO_000300: -4.821e-1

QD
type: SiteQuality
SIO_000300: 8.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 1053
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.303086135421465e-4
allele num: 8684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14020
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.327929e6

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

QD
type: SiteQuality
SIO_000300: 5.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720104582358608e-5
allele num: 58136
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13948
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.316865e6

MQRankSum
type: SiteQuality
SIO_000300: -1.344e0

QD
type: SiteQuality
SIO_000300: 1.641e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.114081996434938e-4
allele num: 8976
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.285718e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 1410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.00390507659958e-4
allele num: 6658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -3.76e-1

FS
type: SiteQuality
SIO_000300: 1.182e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.165431e6

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1247
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variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

QD
type: SiteQuality
SIO_000300: 1.146e1

DP
type: SiteQuality
SIO_000300: 1.056791e6

FS
type: SiteQuality
SIO_000300: 2.197e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.173e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.262648203457326e-5
allele num: 44196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

MQRankSum
type: SiteQuality
SIO_000300: -1.115e0

DP
type: SiteQuality
SIO_000300: 1.034569e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.409e1

MQ
type: SiteQuality
SIO_000300: 6.107e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.490405841399219e-5
allele num: 11778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7054
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.017229e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.187e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.563110121596163e-5
allele num: 11678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.34115278363066e-5
allele num: 42714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.134e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 1.008713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

FS
type: SiteQuality
SIO_000300: 4.255e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.110352673492605e-5
allele num: 42192
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.726817475392851e-4
allele num: 11582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

FS
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

DP
type: SiteQuality
SIO_000300: 9.99769e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.829975096219153e-5
allele num: 35336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4176
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.878e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
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SIO_000300: -2.021e0

DP
type: SiteQuality
SIO_000300: 8.69767e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.404e-1

QD
type: SiteQuality
SIO_000300: 1.699e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.883173797716526e-5
allele num: 34684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.875e0

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

FS
type: SiteQuality
SIO_000300: 6.217e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.61331e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-1

QD
type: SiteQuality
SIO_000300: 4.33e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.9776436128878e-5
allele num: 33458
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.63e-1

FS
type: SiteQuality
SIO_000300: 1.845e0

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 8.41334e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.37e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8706
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.284935286774851e-5
allele num: 30442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.95606e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

QD
type: SiteQuality
SIO_000300: 1.722e1

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 6.37e0

GenotypeQuality
all individuals: 781
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
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GenotypeQuality
all individuals: 130
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 3.044242998241104e-4
allele num: 29564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.89e-2

FS
type: SiteQuality
SIO_000300: 8.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 7.80925e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 127
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.570918440222826e-5
allele num: 28004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 7.59254e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5174
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22918
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
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MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.682e1

DP
type: SiteQuality
SIO_000300: 6.89289e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22880
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3152
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1942
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 6.88688e5

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 3.50385423966363e-4
allele num: 22832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3138
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.165289256198347e-4
allele num: 1936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.42e-2

QD
type: SiteQuality
SIO_000300: 1.24e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

FS
type: SiteQuality
SIO_000300: 2.182e0

DP
type: SiteQuality
SIO_000300: 6.88092e5

GenotypeQuality
all individuals: 2860
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22846
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.82e-2

DP
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SIO_000300: 6.86995e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.456e-1

QD
type: SiteQuality
SIO_000300: 2.48e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 57

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 52
allele frequency: 1.13388573920628e-2
allele num: 4586
num of homozygotes: 1

Latino
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allele count: 1
allele frequency: 5.330490405117271e-4
allele num: 1876
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

DP
type: SiteQuality
SIO_000300: 6.8195e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 1.005e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 1686
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GenotypeQuality
all individuals: 487
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 5.302226935312831e-5
allele num: 18860
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.42e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.312e0

DP
type: SiteQuality
SIO_000300: 6.35027e5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1500
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.174364040503828e-5
allele num: 16196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.085562652349656e-5
allele num: 64818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.275e1

VQSLOD
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

FS
type: SiteQuality
SIO_000300: 1.516e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.62229e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
all individuals: 114
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 866
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variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.169792694965449e-5
allele num: 16208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.638718e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 751
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.24e-1

DP
type: SiteQuality
SIO_000300: 1.709348e6

QD
type: SiteQuality
SIO_000300: 1.435e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01559060341968e-5
allele num: 66322
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.528e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.59e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.745864e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
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Other
type: Population
allele count: 0
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allele num: 886
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 1.368e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 6.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.957e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.748696e6

VQSLOD
type: SiteQuality
SIO_000300: -1.014e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6065
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505525277769414e-5
allele num: 66422
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.03e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.223e1

DP
type: SiteQuality
SIO_000300: 1.750339e6

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.278e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.57e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.97e-1

DP
type: SiteQuality
SIO_000300: 1.758242e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.052e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.758769e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

FS
type: SiteQuality
SIO_000300: 1.3906e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.381e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1015
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.712e0

VQSLOD
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.861e0

DP
type: SiteQuality
SIO_000300: 1.759177e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.759135e6

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

FS
type: SiteQuality
SIO_000300: 8.847e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6140
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

QD
type: SiteQuality
SIO_000300: 1.066e1

DP
type: SiteQuality
SIO_000300: 1.759135e6

FS
type: SiteQuality
SIO_000300: 8.847e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.872e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

MQRankSum
type: SiteQuality
SIO_000300: 5.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.355e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

DP
type: SiteQuality
SIO_000300: 1.758859e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.759e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 4.478e0

DP
type: SiteQuality
SIO_000300: 1.758022e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -5.616e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.448e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.597e0

DP
type: SiteQuality
SIO_000300: 1.757966e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

ClippingRankSum
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.357e1

DP
type: SiteQuality
SIO_000300: 1.757688e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4982
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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African
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allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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QD
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ClippingRankSum
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SIO_000300: -1.343e0

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
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SIO_000300: 5.912e1

InbreedingCoeff
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MQRankSum
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QD
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FS
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.6e-1

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9790
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.001560811622043e-5
allele num: 66632
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
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SIO_000300: 5.172e0

MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.2e-3

ClippingRankSum
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SIO_000300: -1.553e0

FS
type: SiteQuality
SIO_000300: 1.284e0

ReadPosRankSum
type: SiteQuality
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QD
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MQ
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.752091e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.750429e6

FS
type: SiteQuality
SIO_000300: 1.816e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.768e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.675e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Non-Finnish)
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allele count: 11
allele frequency: 1.655130905808005e-4
allele num: 66460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.747338e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

FS
type: SiteQuality
SIO_000300: 5.92e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16066
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VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

FS
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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South Asian
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allele num: 15994
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Latino
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East Asian
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Other
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European (Non-Finnish)
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FS
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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Latino
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African
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South Asian
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allele frequency: 6.341154090044388e-5
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VQSLOD
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SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.084577415740545e-5
allele num: 66046
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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Other
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South Asian
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -9.0e-2

DP
type: SiteQuality
SIO_000300: 1.722261e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1725
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.334267040149393e-4
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514096235956757e-5
allele num: 66046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.428387760349704e-5
allele num: 15556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.425e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.722261e6

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
all individuals: 1455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.110097449720091e-4
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65884
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.089e0

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.465e-1

FS
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.710408e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529472943623627e-5
allele num: 65382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.503e1

MQRankSum
type: SiteQuality
SIO_000300: -2.73e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 1.922e0

DP
type: SiteQuality
SIO_000300: 1.675079e6

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
all individuals: 249
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
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variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546264225630876e-5
allele num: 64672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

QD
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.602011e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.47e-1

GenotypeQuality
all individuals: 342
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14520
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.830801836806782e-5
allele num: 11324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64700
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.621e1

FS
type: SiteQuality
SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.51e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

DP
type: SiteQuality
SIO_000300: 1.601437e6

GenotypeQuality
all individuals: 2351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.053962900505902e-4
allele num: 9488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.511e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.205e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 1.578043e6

QD
type: SiteQuality
SIO_000300: 1.066e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 967
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24308
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.562939576755963e-5
allele num: 63982
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.037e1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.558678e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 1227
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4972
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 931
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.377637460535775e-5
allele num: 63982
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.140105578541875e-4
allele num: 14018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 9.720000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 1.558678e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

MQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.290755322251386e-5
allele num: 13716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498966e6

MQRankSum
type: SiteQuality
SIO_000300: -5.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.145e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.870000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2049
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5892
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4965
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13402
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.070893124866138e-4
allele num: 9338
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.973438621679828e-5
allele num: 11144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.152088258471237e-5
allele num: 63450
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.976362279173924e-4
allele num: 8038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-2

DP
type: SiteQuality
SIO_000300: 1.485034e6

FS
type: SiteQuality
SIO_000300: 1.453e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 7
allele frequency: 7.509118214975327e-4
allele num: 9322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.247864528697737e-4
allele num: 13346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580178244105935e-5
allele num: 63284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.969e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 1.477571e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4467
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24872
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591748376416656e-5
allele num: 62824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

DP
type: SiteQuality
SIO_000300: 1.347494e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.524e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

GenotypeQuality
all individuals: 3595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.25e1
variant carriers: 0