1-155939108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939108
    reference: chr 1
allele count: 1
allele frequency: 8.25722920416825e-6
allele num: 121106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22237T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-17T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-17T>C
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-155939109-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939109
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939109
    reference: chr 1
allele count: 45
allele frequency: 3.715937241948803e-4
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22238C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-18C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-18C>G
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7036
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4765
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-155939110-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939110
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939110
    reference: chr 1
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22239C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-19C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-19C>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/1-155939112-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939112
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939112
    reference: chr 1
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22241T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-21T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-21T>G
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-155939113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939113
    reference: chr 1
allele count: 3
allele frequency: 2.478150968957029e-5
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22242C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-22C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-22C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

1-155939118-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939118
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939119
    reference: chr 1
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.40-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22248dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-28dupC
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-28dupC
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 7033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-155939298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939298
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939298
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 3206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22427G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.39+27G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-207G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-207G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

1-155939299-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939299
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939299
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 3206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22428C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.39+26C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-208C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-208C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27461
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD

1-155939319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939319
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939319
    reference: chr 1
allele count: 1
allele frequency: 3.779289493575208e-4
allele num: 2646
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.39+6T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-228T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22448T>C
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.39+6T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-155939336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939336
    reference: chr 1
allele count: 1
allele frequency: 4.460303300624443e-4
allele num: 2242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22465C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.28C>T
  hgvsp: ENSP00000476699.1:p.Arg10Cys
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-245C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-245C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg10Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-155939353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939353
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939353
    reference: chr 1
allele count: 1
allele frequency: 4.878048780487805e-4
allele num: 2050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22482A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.11A>G
  hgvsp: ENSP00000476699.1:p.Asn4Ser
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-262A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-262A>G
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn4Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-155939376-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939376
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939376
    reference: chr 1
allele count: 1
allele frequency: 5.219206680584551e-4
allele num: 1916
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22505T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.-13T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-285T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-285T>G
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-155939409-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939409
    reference: chr 1
allele count: 1
allele frequency: 5.434782608695652e-4
allele num: 1840
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.-46G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-318G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22538G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-318G>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-155939409-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155939409
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155939409
    reference: chr 1
allele count: 3
allele frequency: 1.630434782608696e-3
allele num: 1840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.67-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.658-22538G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000487755
  gene symbol: ARHGEF2
  hgvsc: ENST00000487755.1:n.1096-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476699
  ensembl transcript: ENST00000609707
  gene symbol: ARHGEF2
  hgvsc: ENST00000609707.1:c.-46G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-318G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-318G>C
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-155942011-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942011
    reference: chr 1
allele count: 1
allele frequency: 6.594566077552098e-5
allele num: 15164
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23875A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.66+35A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2920A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2920A>G
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS

1-155942015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942015
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942015
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 15174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23871C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.66+31C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2924C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2924C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-155942036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942036
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942036
    reference: chr 1
allele count: 2
allele frequency: 1.290988897495481e-4
allele num: 15492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.66+10G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23850G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2945G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2945G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-155942047-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942047
    reference: chr 1
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.65G>T
  hgvsp: ENSP00000357298.3:p.Arg22Met
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23839G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2956G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2956G>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg22Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-155942047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942047
    reference: chr 1
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23839G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.65G>A
  hgvsp: ENSP00000357298.3:p.Arg22Lys
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2956G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2956G>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg22Lys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-155942053-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942053
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942053
    reference: chr 1
allele count: 1
allele frequency: 6.454111268878275e-5
allele num: 15494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23833G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.59G>A
  hgvsp: ENSP00000357298.3:p.Arg20Gln
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2962G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2962G>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg20Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-155942054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942054
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942054
    reference: chr 1
allele count: 2
allele frequency: 1.288825879623663e-4
allele num: 15518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23832C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.58C>T
  hgvsp: ENSP00000357298.3:p.Arg20Ter
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2963C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2963C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg20Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

1-155942058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942058
    reference: chr 1
allele count: 4
allele frequency: 2.580312217778351e-4
allele num: 15502
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.54A>G
  hgvsp: ENST00000368315.4:c.54A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23828A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2967A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2967A>G
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser18Ser
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

1-155942086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942086
    reference: chr 1
allele count: 2
allele frequency: 1.325732467188121e-4
allele num: 15086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23800C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357298
  ensembl transcript: ENST00000368315
  gene symbol: ARHGEF2
  hgvsc: ENST00000368315.4:c.26C>T
  hgvsp: ENSP00000357298.3:p.Pro9Leu
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-2995C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-2995C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro9Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-155942129-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942129
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942129
    reference: chr 1
allele count: 1
allele frequency: 6.891798759476223e-5
allele num: 14510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23757G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-3038G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-3038G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-155942141-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942141
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 14246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23745C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-3050C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-3050C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

1-155942158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155942158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155942158
    reference: chr 1
allele count: 1
allele frequency: 7.189072609633358e-5
allele num: 13910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.202-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476724
  ensembl transcript: ENST00000497907
  gene symbol: ARHGEF2
  hgvsc: ENST00000497907.1:c.-18-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000315325
  ensembl transcript: ENST00000313695
  gene symbol: ARHGEF2
  hgvsc: ENST00000313695.7:c.-18-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.199-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.138-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.64-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.199-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+23728C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-18-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.64-3067C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-18-3067C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-155948115-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948115
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948115
    reference: chr 1
allele count: 1
allele frequency: 7.17772035601493e-5
allele num: 13932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4783G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.137+41G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17771G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+589G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.63+41G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4783G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.63+41G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4783G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+589G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

1-155948127-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948127
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948127
    reference: chr 1
allele count: 1
allele frequency: 7.051191651389085e-5
allele num: 14182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.137+29C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4771C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17759C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4771C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+577C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+577C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.63+29C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4771C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.63+29C>G
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-155948146-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948146
    reference: chr 1
allele count: 1
allele frequency: 6.815703380588877e-5
allele num: 14672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4752G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+558G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4752G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4752G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.63+10G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17740G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+558G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.63+10G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.137+10G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

1-155948147-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948147
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948147
    reference: chr 1
allele count: 1
allele frequency: 6.806425265450586e-5
allele num: 14692
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4751G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.63+9G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17739G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4751G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+557G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4751G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.137+9G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.63+9G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+557G>C
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-155948147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948147
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948147
    reference: chr 1
allele count: 2
allele frequency: 1.361285053090117e-4
allele num: 14692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4751G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+557G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.137+9G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4751G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4751G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.63+9G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17739G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+557G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.63+9G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-155948165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948165
    reference: chr 1
allele count: 1
allele frequency: 6.547073458164201e-5
allele num: 15274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4733G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4733G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.54G>A
  hgvsp: ENST00000313667.4:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4733G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+539G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.128G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.54G>A
  hgvsp: ENST00000361247.4:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17721G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+539G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu18Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

1-155948218-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948218
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948218
    reference: chr 1
allele count: 1
allele frequency: 7.447125409591897e-5
allele num: 13428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17668A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.1A>T
  hgvsp: ENSP00000354837.4:p.Met1?
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4680A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4680A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4680A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.75A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+486A>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000314787
  ensembl transcript: ENST00000313667
  gene symbol: ARHGEF2
  hgvsc: ENST00000313667.4:c.1A>T
  hgvsp: ENSP00000314787.4:p.Met1?
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+486A>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-155948226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948226
    reference: chr 1
allele count: 1
allele frequency: 7.925186241876684e-5
allele num: 12618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4672G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+478G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17660G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4672G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.67G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+478G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4672G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-8G>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

1-155948227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948227
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948227
    reference: chr 1
allele count: 2
allele frequency: 1.618908855431439e-4
allele num: 12354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.66C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17659C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-9C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+477C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4671C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4671C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4671C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+477C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

1-155948228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948228
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948228
    reference: chr 1
allele count: 1
allele frequency: 8.072328059412334e-5
allele num: 12388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+476C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17658C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.65C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+476C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4670C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4670C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-10C>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4670C>G
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

1-155948232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948232
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948232
    reference: chr 1
allele count: 7
allele frequency: 5.914160189253126e-4
allele num: 11836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+472C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4666C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4666C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17654C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4666C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-14C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.61C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+472C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-155948247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948247
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948247
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 10376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4651C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4651C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4651C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+457C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-29C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17639C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.46C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+457C>T
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-155948250-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948250
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948250
    reference: chr 1
allele count: 1
allele frequency: 1.103265666372463e-4
allele num: 9064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4648C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4648C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4648C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-32C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17636C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+454C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.43C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+454C>A
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3489
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

1-155948265-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155948265
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155948265
    reference: chr 1
allele count: 1
allele frequency: 1.27942681678608e-4
allele num: 7816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+4633G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+4633G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000477299
  ensembl transcript: ENST00000471589
  gene symbol: ARHGEF2
  hgvsc: ENST00000471589.1:c.-19+439G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000354837
  ensembl transcript: ENST00000361247
  gene symbol: ARHGEF2
  hgvsc: ENST00000361247.4:c.-47G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000476273
  gene symbol: ARHGEF2
  hgvsc: ENST00000476273.1:n.28G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+17621G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000465079
  gene symbol: ARHGEF2
  hgvsc: ENST00000465079.1:n.201+439G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+4633G>C
  variant of: http://identifiers.org/hgnc/682
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-155952862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952862
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952862
    reference: chr 1
allele count: 12
allele frequency: 9.708737864077669e-4
allele num: 12360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+36C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+36C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+36C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+13024C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-155952886-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952886
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952886
    reference: chr 1
allele count: 5
allele frequency: 4.035512510088781e-4
allele num: 12390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-19+12C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+13000C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.198+12C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.198+12C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3862
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

1-155952910-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952910
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-31C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.186C>T
  hgvsp: ENST00000462460.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.186C>T
  hgvsp: ENST00000495070.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12976C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr62Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-155952920-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952920
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952920
    reference: chr 1
allele count: 1
allele frequency: 8.073631519457452e-5
allele num: 12386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-41C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.176C>T
  hgvsp: ENSP00000476916.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12966C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.176C>T
  hgvsp: ENSP00000476532.1:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser59Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

1-155952950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952950
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952950
    reference: chr 1
allele count: 1
allele frequency: 8.087997411840829e-5
allele num: 12364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.146C>T
  hgvsp: ENSP00000476916.1:p.Ser49Phe
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.146C>T
  hgvsp: ENSP00000476532.1:p.Ser49Phe
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12936C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3330
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
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genotype quality: GenotypeQuality
  all individuals: 540
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
  all individuals: 631
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genotype quality: GenotypeQuality
  all individuals: 5
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genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser49Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-155952958-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952958
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952958
    reference: chr 1
allele count: 1
allele frequency: 8.09192425958893e-5
allele num: 12358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-79G>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.138G>T
  hgvsp: ENST00000462460.2:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.138G>T
  hgvsp: ENST00000495070.2:c.138G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12928G>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 493
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 271
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 360
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg46Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-155952959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952959
    reference: chr 1
allele count: 4
allele frequency: 3.237817710862878e-4
allele num: 12354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-80G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.137G>A
  hgvsp: ENSP00000476532.1:p.Arg46Gln
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.137G>A
  hgvsp: ENSP00000476916.1:p.Arg46Gln
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12927G>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg46Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

1-155952960-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952960
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952960
    reference: chr 1
allele count: 2
allele frequency: 1.618908855431439e-4
allele num: 12354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.136C>A
  hgvsp: ENST00000462460.2:c.136C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12926C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.136C>A
  hgvsp: ENST00000495070.2:c.136C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-81C>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg46Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-155952968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155952968
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155952968
    reference: chr 1
allele count: 1
allele frequency: 8.090614886731392e-5
allele num: 12360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.128C>T
  hgvsp: ENSP00000476532.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-89C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12918C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.128C>T
  hgvsp: ENSP00000476916.1:p.Ser43Leu
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 499
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genotype quality: GenotypeQuality
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser43Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/1-155953011-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155953011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155953011
    reference: chr 1
allele count: 7
allele frequency: 5.667098445595854e-4
allele num: 12352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+12875T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.105-20T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-112-20T>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.105-20T>G
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 233
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 550
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genotype quality: GenotypeQuality
  all individuals: 962
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

1-155954146-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155954146
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155954146
    reference: chr 1
allele count: 2
allele frequency: 1.622586402725945e-4
allele num: 12326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+11740T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.104+39T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-113+39T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.104+39T>C
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 264
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genotype quality: GenotypeQuality
  all individuals: 251
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genotype quality: GenotypeQuality
  all individuals: 453
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 473
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genotype quality: GenotypeQuality
  all individuals: 640
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-155954186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155954186
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155954186
    reference: chr 1
allele count: 4
allele frequency: 3.244646333549643e-4
allele num: 12328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-114C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+11700C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.103C>T
  hgvsp: ENSP00000476916.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.103C>T
  hgvsp: ENSP00000476532.1:p.Arg35Cys
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg35Cys
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

1-155954200-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155954200
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155954200
    reference: chr 1
allele count: 9
allele frequency: 7.304009089433534e-4
allele num: 12322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.89T>C
  hgvsp: ENSP00000476532.1:p.Ile30Thr
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-128T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+11686T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.89T>C
  hgvsp: ENSP00000476916.1:p.Ile30Thr
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile30Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-155954208-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155954208
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155954208
    reference: chr 1
allele count: 1
allele frequency: 8.116883116883117e-5
allele num: 12320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+11678C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.81C>A
  hgvsp: ENST00000462460.2:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-136C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.81C>A
  hgvsp: ENST00000495070.2:c.81C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 505
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genotype quality: GenotypeQuality
  all individuals: 4
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser27Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-155954242-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155954242
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155954242
    reference: chr 1
allele count: 1
allele frequency: 8.128759551292472e-5
allele num: 12302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+11644C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-152-18C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.65-18C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.65-18C>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 977
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 405
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-155955076-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955076
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955076
    reference: chr 1
allele count: 12334
allele frequency: 1.0e0
allele num: 12334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-153+47T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.64+47T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10810T>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.64+47T>C
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 964
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 714
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 830
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 987
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.75e1
  variant carriers: 1087
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.75e1
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 5.25e1
  variant carriers: 490
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 8.25e1
  variant carriers: 285
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.5e0
  variant carriers: 548
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.25e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 9.75e1
  variant carriers: 4601
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 6.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 230
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.75e1
  variant carriers: 246
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 6.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 52
num of homozygotes: 6167
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-155955079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955079
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955079
    reference: chr 1
allele count: 2
allele frequency: 1.625487646293888e-4
allele num: 12304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.64+44A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.64+44A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-153+44A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10807A>G
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-155955090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955090
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955090
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.64+33C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.64+33C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-153+33C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10796C>T
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

1-155955090-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955090
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955090
    reference: chr 1
allele count: 1
allele frequency: 8.122157244964262e-5
allele num: 12312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.64+33C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.64+33C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-153+33C>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10796C>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-155955095-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955095
    reference: chr 1
allele count: 1
allele frequency: 8.120838070488874e-5
allele num: 12314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-153+28G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.64+28G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10791G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.64+28G>C
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-155955133-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955133
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955133
    reference: chr 1
allele count: 1
allele frequency: 8.112932013629726e-5
allele num: 12326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.54G>C
  hgvsp: ENST00000495070.2:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-163G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10753G>C
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.54G>C
  hgvsp: ENST00000462460.2:c.54G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser18Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-155955165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955165
    reference: chr 1
allele count: 12
allele frequency: 9.73393900064893e-4
allele num: 12328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10721G>A
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.22G>A
  hgvsp: ENSP00000476916.1:p.Val8Met
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.22G>A
  hgvsp: ENSP00000476532.1:p.Val8Met
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-195G>A
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val8Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-155955166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955166
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955166
    reference: chr 1
allele count: 1
allele frequency: 8.112932013629726e-5
allele num: 12326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476518
  ensembl transcript: ENST00000423422
  gene symbol: ARHGEF2
  hgvsc: ENST00000423422.1:c.21C>T
  hgvsp: ENST00000423422.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.21C>T
  hgvsp: ENST00000462460.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-196C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10720C>T
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.21C>T
  hgvsp: ENST00000495070.2:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro7Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-155955186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155955186
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155955186
    reference: chr 1
allele count: 1
allele frequency: 8.110300081103001e-5
allele num: 12330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476518
  ensembl transcript: ENST00000423422
  gene symbol: ARHGEF2
  hgvsc: ENST00000423422.1:c.1A>G
  hgvsp: ENSP00000476518.1:p.Met1?
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000357299
  ensembl transcript: ENST00000368316
  gene symbol: ARHGEF2
  hgvsc: ENST00000368316.1:c.-216A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476532
  ensembl transcript: ENST00000495070
  gene symbol: ARHGEF2
  hgvsc: ENST00000495070.2:c.1A>G
  hgvsp: ENSP00000476532.1:p.Met1?
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000116584
  ensembl transcript: ENST00000477754
  gene symbol: ARHGEF2
  hgvsc: ENST00000477754.2:n.657+10700A>G
  variant of: http://identifiers.org/hgnc/682
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000116584
  ensembl protein: ENSP00000476916
  ensembl transcript: ENST00000462460
  gene symbol: ARHGEF2
  hgvsc: ENST00000462460.2:c.1A>G
  hgvsp: ENSP00000476916.1:p.Met1?
  variant of: http://identifiers.org/hgnc/682
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-155979287-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979287
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979287
    reference: chr 1
allele count: 58
allele frequency: 4.827299209321681e-4
allele num: 120150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*127T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*618T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.627T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*127T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1386T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*44T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1278T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*44T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.673T>C
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.759T>C
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9466
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12779
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-155979289-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979289
    reference: chr 1
allele count: 2
allele frequency: 1.663506005256679e-5
allele num: 120228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*616C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*42C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.757C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.671C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1384C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1276C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*42C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.625C>T
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

1-155979310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979310
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979310
    reference: chr 1
allele count: 1
allele frequency: 8.26801600687899e-6
allele num: 120948
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.604C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1255C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1363C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*595C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*104C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*104C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*21C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.736C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.650C>T
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24143
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-155979311-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979311
    reference: chr 1
allele count: 1
allele frequency: 8.265965712774223e-6
allele num: 120978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*103C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1362C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*594C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.735C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.603C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*20C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.649C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*20C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*103C>G
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1254C>G
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

1-155979312-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979312
    reference: chr 1
allele count: 18
allele frequency: 1.487259146643752e-4
allele num: 121028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*102T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1361T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*19T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.602T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*593T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1253T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*102T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.734T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*19T>A
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.648T>A
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18104
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7016
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13257
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-155979318-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 155979318
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 155979318
    reference: chr 1
allele count: 8
allele frequency: 6.599244386517744e-5
allele num: 121226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434870
  ensembl transcript: ENST00000529008
  gene symbol: SSR2
  hgvsc: ENST00000529008.1:c.*96C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000434306
  ensembl transcript: ENST00000480567
  gene symbol: SSR2
  hgvsc: ENST00000480567.1:c.*13C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000436201
  ensembl transcript: ENST00000496742
  gene symbol: SSR2
  hgvsc: ENST00000496742.1:c.*96C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000472467
  gene symbol: SSR2
  hgvsc: ENST00000472467.1:n.1355C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000532074
  gene symbol: SSR2
  hgvsc: ENST00000532074.1:n.596C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000295702
  ensembl transcript: ENST00000295702
  gene symbol: SSR2
  hgvsc: ENST00000295702.4:c.*13C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163479
  ensembl protein: ENSP00000432831
  ensembl transcript: ENST00000473699
  gene symbol: SSR2
  hgvsc: ENST00000473699.1:c.*587C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000488179
  gene symbol: SSR2
  hgvsc: ENST00000488179.2:n.1247C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000484320
  gene symbol: SSR2
  hgvsc: ENST00000484320.2:n.728C>T
  variant of: http://identifiers.org/hgnc/11324
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163479
  ensembl transcript: ENST00000480176
  gene symbol: SSR2
  hgvsc: ENST00000480176.1:n.642C>T
  variant of: http://identifiers.org/hgnc/11324
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18272
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 687
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1121
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8695
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501005673801447e-5
allele num: 66622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

VQSLOD
type: SiteQuality
SIO_000300: -2.316e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 1.2502e1

QD
type: SiteQuality
SIO_000300: 1.057e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.629128e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeDepth
all individuals: 2277
bin: 6.25e1
variant carriers: 7

GenotypeDepth
all individuals: 3342
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 782
bin: 7.75e1
variant carriers: 6

GenotypeDepth
all individuals: 8540
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8694
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 6.003842459173872e-4
allele num: 66624
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European (Finnish)
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allele frequency: 7.559721802237678e-4
allele num: 6614
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MQRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

Other
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East Asian
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allele num: 8654
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African
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South Asian
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66610
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
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BaseQRankSum
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: 2.2e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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SIO_000300: -2.985e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Other
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FS
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -9.89e-2

FS
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VQSLOD
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DP
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 1492
num of homozygotes: 0

African
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Other
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ReadPosRankSum
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MQRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 7.836990595611285e-4
allele num: 1276
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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East Asian
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South Asian
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num of homozygotes: 0

DP
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SIO_000300: 9.9474e4

BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -9.79e-2

MQ
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SIO_000300: 5.978e1

ClippingRankSum
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SIO_000300: -1.39e0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 8.375209380234506e-4
allele num: 1194
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.967e1

MQRankSum
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QD
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ClippingRankSum
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SIO_000300: 8.04e-1

FS
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 9.105e4

ReadPosRankSum
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SIO_000300: 8.04e-1

InbreedingCoeff
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SIO_000300: -9.61e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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East Asian
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Latino
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num of homozygotes: 0

South Asian
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MQRankSum
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VQSLOD
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MQ
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DP
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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African
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Other
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ReadPosRankSum
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MQRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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South Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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QD
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MQRankSum
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FS
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VQSLOD
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 2.358490566037736e-3
allele num: 424
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 1000
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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num of homozygotes: 0

African
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South Asian
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VQSLOD
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ClippingRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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Latino
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South Asian
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InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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Latino
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QD
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

East Asian
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South Asian
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African
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Latino
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Other
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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MQ
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ClippingRankSum
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QD
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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DP
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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Other
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African
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South Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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South Asian
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East Asian
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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MQRankSum
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DP
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FS
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SIO_000300: 2.596e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.54e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.09819555182543e-4
allele num: 4766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.308557969118032e-4
allele num: 7642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
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SIO_000300: -4.29e-2

DP
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SIO_000300: 2.15116e5

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.023e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.315443304393581e-4
allele num: 7602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.506e0

FS
type: SiteQuality
SIO_000300: 3.654e0

InbreedingCoeff
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SIO_000300: -4.8e-2

ClippingRankSum
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SIO_000300: -2.455e0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -3.097e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

DP
type: SiteQuality
SIO_000300: 2.06362e5

QD
type: SiteQuality
SIO_000300: 1.424e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ClippingRankSum
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SIO_000300: 1.39e0

VQSLOD
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SIO_000300: -2.092e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

DP
type: SiteQuality
SIO_000300: 1.97118e5

QD
type: SiteQuality
SIO_000300: 2.07e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.319109461966605e-4
allele num: 4312
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.772e0

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.53e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.88518e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.671122994652406e-4
allele num: 5984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
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SIO_000300: 1.9e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.99e-2

ReadPosRankSum
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SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
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MQ
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QD
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SIO_000300: 1.338e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele num: 1602
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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VQSLOD
type: SiteQuality
SIO_000300: -1.637e0

BaseQRankSum
type: SiteQuality
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DP
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MQ
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QD
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FS
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 6170
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQ
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 268
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African
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South Asian
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East Asian
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QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

DP
type: SiteQuality
SIO_000300: 1.88796e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 6.75e1
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GenotypeQuality
all individuals: 1911
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.75e1
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GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.230012300123001e-3
allele num: 1626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

FS
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

DP
type: SiteQuality
SIO_000300: 1.88796e5

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.573811772112055e-4
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.97035e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.337e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

QD
type: SiteQuality
SIO_000300: 6.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.345e0

GenotypeQuality
all individuals: 127
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.759943681802182e-4
allele num: 5682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.771e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.64969e5

VQSLOD
type: SiteQuality
SIO_000300: -3.278e0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 615
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 45
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 561
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GenotypeQuality
all individuals: 1913
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variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.403846153846154e-3
allele num: 416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.82e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 6.023e1

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

DP
type: SiteQuality
SIO_000300: 1.52261e5

GenotypeQuality
all individuals: 242
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 161
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variant carriers: 2

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 295
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GenotypeQuality
all individuals: 54
bin: 4.75e1
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GenotypeQuality
all individuals: 119
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.783579265985623e-4
allele num: 5286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.314e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.47543e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 1633
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variant carriers: 0

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 119
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.8910741301059e-4
allele num: 5288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.75e-2

DP
type: SiteQuality
SIO_000300: 1.47281e5

VQSLOD
type: SiteQuality
SIO_000300: -1.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.904e0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

FS
type: SiteQuality
SIO_000300: 1.0221e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
all individuals: 163
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 282
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variant carriers: 0

GenotypeQuality
all individuals: 450
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GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 276
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.513840830449827e-3
allele num: 4624
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.39544e5

QD
type: SiteQuality
SIO_000300: 1.292e1

FS
type: SiteQuality
SIO_000300: 1.218e0

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

GenotypeQuality
all individuals: 742
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 710
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GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 39
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GenotypeQuality
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GenotypeQuality
all individuals: 206
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.185e0

QD
type: SiteQuality
SIO_000300: 7.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.638e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 1.24976e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 145
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GenotypeQuality
all individuals: 58
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 154
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.986857825567503e-4
allele num: 3348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.994e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 7.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.16278e5

GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 866
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 47
bin: 8.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.840909090909091e-3
allele num: 352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.10505e5

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.226e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
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GenotypeQuality
all individuals: 451
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.578531965272297e-3
allele num: 7602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.164e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.226e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-2

DP
type: SiteQuality
SIO_000300: 2.03309e5

GenotypeQuality
all individuals: 955
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 67
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variant carriers: 1

GenotypeQuality
all individuals: 488
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.143322475570033e-4
allele num: 3684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.508771929824561e-3
allele num: 570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 3.533e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

QD
type: SiteQuality
SIO_000300: 1.19e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.06756e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 533
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GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 2.06585e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.316e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

GenotypeQuality
all individuals: 339
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variant carriers: 0

GenotypeQuality
all individuals: 269
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.313715186547556e-4
allele num: 7612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

QD
type: SiteQuality
SIO_000300: 1.008e1

FS
type: SiteQuality
SIO_000300: 3.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.245e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.85e-2

DP
type: SiteQuality
SIO_000300: 2.06838e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 490
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.73224043715847e-4
allele num: 3660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.069e1

DP
type: SiteQuality
SIO_000300: 2.06464e5

VQSLOD
type: SiteQuality
SIO_000300: -6.516999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.203e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

GenotypeQuality
all individuals: 218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.736726874657909e-4
allele num: 3654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.06367e5

QD
type: SiteQuality
SIO_000300: 8.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.62e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

VQSLOD
type: SiteQuality
SIO_000300: -1.305e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.494505494505495e-3
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.626050420168067e-4
allele num: 7616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.773049645390071e-3
allele num: 564
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
type: SiteQuality
SIO_000300: -6.815e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

QD
type: SiteQuality
SIO_000300: 1.204e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.66e-2

DP
type: SiteQuality
SIO_000300: 2.06596e5

GenotypeQuality
all individuals: 1955
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.47645125958379e-4
allele num: 3652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.913e0

DP
type: SiteQuality
SIO_000300: 2.06605e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.221000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.021e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 206
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3656
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.645e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.191e0

VQSLOD
type: SiteQuality
SIO_000300: -3.181e0

MQRankSum
type: SiteQuality
SIO_000300: -1.969e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 8.58e0

FS
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 2.06644e5

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.919912232583653e-3
allele num: 3646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.06446e5

FS
type: SiteQuality
SIO_000300: 9.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.51e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.098e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3622
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.0e-3
allele num: 200
num of homozygotes: 0

African
type: Population
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allele frequency: 1.779359430604982e-3
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.982e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.77949e5

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.349e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 513
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variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.249343832020997e-4
allele num: 7620
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.694e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

DP
type: SiteQuality
SIO_000300: 2.7807e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.525e0

FS
type: SiteQuality
SIO_000300: 4.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.181102362204724e-3
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 2.505e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 2.78507e5

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.628e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

DP
type: SiteQuality
SIO_000300: 2.77899e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.201e1

GenotypeQuality
all individuals: 457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.768549280177187e-4
allele num: 3612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: -3.771e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.05e1

DP
type: SiteQuality
SIO_000300: 2.77115e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.913e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 348

GenotypeQuality
all individuals: 279
bin: 1.25e1
variant carriers: 279

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 27

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.0e0
allele num: 2
num of homozygotes: 1

East Asian
type: Population
allele count: 198
allele frequency: 1.0e0
allele num: 198
num of homozygotes: 99

South Asian
type: Population
allele count: 7616
allele frequency: 1.0e0
allele num: 7616
num of homozygotes: 3808

European (Non-Finnish)
type: Population
allele count: 3628
allele frequency: 1.0e0
allele num: 3628
num of homozygotes: 1814

African
type: Population
allele count: 570
allele frequency: 1.0e0
allele num: 570
num of homozygotes: 285

Other
type: Population
allele count: 132
allele frequency: 1.0e0
allele num: 132
num of homozygotes: 66

Latino
type: Population
allele count: 188
allele frequency: 1.0e0
allele num: 188
num of homozygotes: 94

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.56107e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.252e1

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

GenotypeQuality
all individuals: 448
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.628120893561104e-4
allele num: 7610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.45265e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.919e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

DP
type: SiteQuality
SIO_000300: 2.45749e5

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

MQ
type: SiteQuality
SIO_000300: 5.705e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312680493567866e-4
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.705e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

QD
type: SiteQuality
SIO_000300: 1.169e1

VQSLOD
type: SiteQuality
SIO_000300: -9.919e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

DP
type: SiteQuality
SIO_000300: 2.45749e5

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.575757575757576e-3
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.46036e5

QD
type: SiteQuality
SIO_000300: 1.71e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.94e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.472e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.96e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.779359430604982e-3
allele num: 562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.051e0

DP
type: SiteQuality
SIO_000300: 2.46596e5

FS
type: SiteQuality
SIO_000300: 6.637e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

GenotypeQuality
all individuals: 515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.574803149606299e-3
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.08e-1

DP
type: SiteQuality
SIO_000300: 2.47718e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.026e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

QD
type: SiteQuality
SIO_000300: 8.43e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

VQSLOD
type: SiteQuality
SIO_000300: -2.527e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.49e-2

DP
type: SiteQuality
SIO_000300: 2.4698e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.46925e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 57

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 5.142635358043858e-3
allele num: 10306
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.495281370150297e-4
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.969113e6

QD
type: SiteQuality
SIO_000300: 1.419e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

VQSLOD
type: SiteQuality
SIO_000300: 5.72e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027092477675193e-5
allele num: 66070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

QD
type: SiteQuality
SIO_000300: 1.435e1

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.970707e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.819e1

MQRankSum
type: SiteQuality
SIO_000300: 2.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.08e-1

DP
type: SiteQuality
SIO_000300: 2.004136e6

VQSLOD
type: SiteQuality
SIO_000300: -2.153e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-1

DP
type: SiteQuality
SIO_000300: 2.005177e6

QD
type: SiteQuality
SIO_000300: 1.203e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 18

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600104004160167e-4
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.953125e-4
allele num: 66560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

FS
type: SiteQuality
SIO_000300: 6.59e-1

ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0