1-15817806-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817806
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817806
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.356A>G
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2473T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: stop_retained_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.809A>G
  hgvsp: ENST00000375910.3:c.809A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29995
canonical: true
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ter270Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-15817818-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817818
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817818
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*11T>G
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2461A>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.368T>G
  variant of: http://identifiers.org/hgnc/29995
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1300
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genotype quality: GenotypeQuality
  all individuals: 1769
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

1-15817819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817819
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817819
    reference: chr 1
allele count: 11
allele frequency: 9.060209208467177e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*12C>T
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2460G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.369C>T
  variant of: http://identifiers.org/hgnc/29995
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4254
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 50310
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 777
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genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-15817830-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817830
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817830
    reference: chr 1
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*23T>C
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.380T>C
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2449A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50307
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

1-15817841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817841
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817841
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*34G>A
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.391G>A
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2438C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6606
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1647
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50305
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-15817845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817845
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2434C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*38G>A
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.395G>A
  variant of: http://identifiers.org/hgnc/29995
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4883
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 8.25e1
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genotype depth: GenotypeDepth
  all individuals: 4250
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 6601
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
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genotype depth: GenotypeDepth
  all individuals: 964
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genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1609
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1759
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genotype quality: GenotypeQuality
  all individuals: 16
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genotype quality: GenotypeQuality
  all individuals: 19
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genotype quality: GenotypeQuality
  all individuals: 50300
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/1-15817858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15817858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15817858
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*2421T>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000215704
  ensembl protein: ENSP00000365075
  ensembl transcript: ENST00000375910
  gene symbol: CELA2B
  hgvsc: ENST00000375910.3:c.*51A>C
  variant of: http://identifiers.org/hgnc/29995
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000215704
  ensembl transcript: ENST00000488764
  gene symbol: CELA2B
  hgvsc: ENST00000488764.1:n.408A>C
  variant of: http://identifiers.org/hgnc/29995
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 1131
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 214
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1757
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genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

1-15819397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819397
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819397
    reference: chr 1
allele count: 1
allele frequency: 8.331805835596807e-6
allele num: 120022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*41C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*882C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*41C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*41C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*885C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 345
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3843
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genotype quality: GenotypeQuality
  all individuals: 2200
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 173
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genotype quality: GenotypeQuality
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-15819398-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819398
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819398
    reference: chr 1
allele count: 1
allele frequency: 8.334444592612349e-6
allele num: 119984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*40G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*881G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*884G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*40G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*40G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3843
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

1-15819399-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819399
    reference: chr 1
allele count: 2
allele frequency: 1.666055779547499e-5
allele num: 120044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*39A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*39A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*883A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*880A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*39A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8423
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3836
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

1-15819400-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819400
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819400
    reference: chr 1
allele count: 1
allele frequency: 8.330972891014212e-6
allele num: 120034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*38A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*882A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*879A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*38A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*38A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2199
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
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genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-15819402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819402
    reference: chr 1
allele count: 4
allele frequency: 3.332000533120085e-5
allele num: 120048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*880C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*36C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*36C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*36C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*877C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*36C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 268
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genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 29203
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

1-15819416-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819416
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819416
    reference: chr 1
allele count: 1
allele frequency: 8.318775476249896e-6
allele num: 120210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*22C>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*22C>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*866C>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*863C>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*22C>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*22C>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9314
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-15819418-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819418
    reference: chr 1
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*20G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*864G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*20G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*861G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*20G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29204
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

1-15819426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819426
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819426
    reference: chr 1
allele count: 2
allele frequency: 1.660908849322349e-5
allele num: 120416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*12C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*12C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*12C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*856C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*853C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*12C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4349
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-15819429-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819429
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819429
    reference: chr 1
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*9C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*9C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*9C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*9C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*853C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*850C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
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genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
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genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 613
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genotype depth: GenotypeDepth
  all individuals: 875
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genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 29209
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genotype quality: GenotypeQuality
  all individuals: 11
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3932
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 24
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genotype quality: GenotypeQuality
  all individuals: 2239
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genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-15819435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819435
    reference: chr 1
allele count: 68
allele frequency: 5.639128920438525e-4
allele num: 120586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*844C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*847C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3924
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-15819436-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819436
    reference: chr 1
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*846G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.*2G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.*2G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*843G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.*2G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.*2G>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9924
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-15819440-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819440
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819440
    reference: chr 1
allele count: 2
allele frequency: 1.657660047077545e-5
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: stop_lost
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1249T>G
  hgvsp: ENSP00000330237.5:p.Ter417GluextTer20
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.799T>G
  hgvsp: ENSP00000255256.7:p.Ter267GluextTer20
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.593T>G
  hgvsp: ENSP00000408691.1:p.Ter199GluextTer20
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*839T>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*821T>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.1000T>G
  hgvsp: ENSP00000365051.4:p.Ter334GluextTer20
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*842T>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ter417GluextTer20
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

1-15819441-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819441
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819441
    reference: chr 1
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.592A>G
  hgvsp: ENST00000424908.1:c.592A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.999A>G
  hgvsp: ENST00000375890.4:c.999A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1248A>G
  hgvsp: ENST00000333868.5:c.1248A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*838A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*820A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.798A>G
  hgvsp: ENST00000348549.5:c.798A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*841A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser416Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-15819448-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819448
    reference: chr 1
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*834A>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*813A>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1241A>C
  hgvsp: ENSP00000330237.5:p.Lys414Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*831A>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.791A>C
  hgvsp: ENSP00000255256.7:p.Lys264Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.992A>C
  hgvsp: ENSP00000365051.4:p.Lys331Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.585A>C
  hgvsp: ENSP00000408691.1:p.Lys196Thr
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3945
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10167
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys414Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-15819450-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819450
    reference: chr 1
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.583T>A
  hgvsp: ENSP00000408691.1:p.Phe195Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*829T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*832T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.990T>A
  hgvsp: ENSP00000365051.4:p.Phe330Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*811T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1239T>A
  hgvsp: ENSP00000330237.5:p.Phe413Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.789T>A
  hgvsp: ENSP00000255256.7:p.Phe263Leu
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29182
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe413Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-15819458-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819459
    reference: chr 1
allele count: 1
allele frequency: 8.27841981522567e-6
allele num: 120796
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.981dupA
  hgvsp: ENSP00000365051.4:p.Leu328ThrfsTer4
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*820dupA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*823dupA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.574dupA
  hgvsp: ENSP00000408691.1:p.Leu193ThrfsTer4
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1230dupA
  hgvsp: ENSP00000330237.5:p.Leu411ThrfsTer4
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.780dupA
  hgvsp: ENSP00000255256.7:p.Leu261ThrfsTer4
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*802dupA
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu411ThrfsTer4
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

1-15819461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819461
    reference: chr 1
allele count: 1
allele frequency: 8.276775368316504e-6
allele num: 120820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*800A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.572A>G
  hgvsp: ENSP00000408691.1:p.Lys192Glu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*821A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.778A>G
  hgvsp: ENSP00000255256.7:p.Lys260Glu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1228A>G
  hgvsp: ENSP00000330237.5:p.Lys410Glu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.979A>G
  hgvsp: ENSP00000365051.4:p.Lys327Glu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*818A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10200
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys410Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

1-15819463-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819463
    reference: chr 1
allele count: 1
allele frequency: 8.277323444690924e-6
allele num: 120812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*798A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.776A>G
  hgvsp: ENSP00000255256.7:p.Lys259Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*816A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.977A>G
  hgvsp: ENSP00000365051.4:p.Lys326Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1226A>G
  hgvsp: ENSP00000330237.5:p.Lys409Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.570A>G
  hgvsp: ENSP00000408691.1:p.Lys191Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*819A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys409Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

1-15819466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819466
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819466
    reference: chr 1
allele count: 2
allele frequency: 1.655409879486161e-5
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*813G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*795G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.974G>A
  hgvsp: ENSP00000365051.4:p.Arg325Gln
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1223G>A
  hgvsp: ENSP00000330237.5:p.Arg408Gln
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*816G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.773G>A
  hgvsp: ENSP00000255256.7:p.Arg258Gln
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.567G>A
  hgvsp: ENSP00000408691.1:p.Arg190Gln
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29179
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg408Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-15819467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819467
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819467
    reference: chr 1
allele count: 5
allele frequency: 4.138319180281737e-5
allele num: 120822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*815C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.973C>T
  hgvsp: ENSP00000365051.4:p.Arg325Trp
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.566C>T
  hgvsp: ENSP00000408691.1:p.Arg190Trp
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*794C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*812C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.772C>T
  hgvsp: ENSP00000255256.7:p.Arg258Trp
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1222C>T
  hgvsp: ENSP00000330237.5:p.Arg408Trp
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29180
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10215
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg408Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

1-15819471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819471
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819471
    reference: chr 1
allele count: 2
allele frequency: 1.655245472903632e-5
allele num: 120828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.969C>T
  hgvsp: ENST00000375890.4:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1218C>T
  hgvsp: ENST00000333868.5:c.1218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*790C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.562C>T
  hgvsp: ENST00000424908.1:c.562C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*811C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*808C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.768C>T
  hgvsp: ENST00000348549.5:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3940
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe406Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-15819485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819485
    reference: chr 1
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*776G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.955G>A
  hgvsp: ENSP00000365051.4:p.Gly319Ser
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1204G>A
  hgvsp: ENSP00000330237.5:p.Gly402Ser
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.548G>A
  hgvsp: ENSP00000408691.1:p.Gly184Ser
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.754G>A
  hgvsp: ENSP00000255256.7:p.Gly252Ser
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*794G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*797G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4404
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly402Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-15819492-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819492
    reference: chr 1
allele count: 1
allele frequency: 8.279105194310599e-6
allele num: 120786
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1197G>T
  hgvsp: ENSP00000330237.5:p.Gln399His
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.541G>T
  hgvsp: ENSP00000408691.1:p.Gln181His
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.948G>T
  hgvsp: ENSP00000365051.4:p.Gln316His
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*790G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.747G>T
  hgvsp: ENSP00000255256.7:p.Gln249His
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*769G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*787G>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4400
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln399His
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-15819502-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819502
    reference: chr 1
allele count: 14
allele frequency: 1.159785274040692e-4
allele num: 120712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.938T>A
  hgvsp: ENSP00000365051.4:p.Ile313Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*759T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.737T>A
  hgvsp: ENSP00000255256.7:p.Ile246Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*780T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.531T>A
  hgvsp: ENSP00000408691.1:p.Ile178Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1187T>A
  hgvsp: ENSP00000330237.5:p.Ile396Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*777T>A
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8300
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3931
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile396Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

1-15819504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819504
    reference: chr 1
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*757G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1185G>A
  hgvsp: ENST00000333868.5:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*778G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*775G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.936G>A
  hgvsp: ENST00000375890.4:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.529G>A
  hgvsp: ENST00000424908.1:c.529G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.735G>A
  hgvsp: ENST00000348549.5:c.735G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly395Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-15819513-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819513
    reference: chr 1
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.927G>C
  hgvsp: ENST00000375890.4:c.927G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1176G>C
  hgvsp: ENST00000333868.5:c.1176G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*748G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.726G>C
  hgvsp: ENST00000348549.5:c.726G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.520G>C
  hgvsp: ENST00000424908.1:c.520G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*769G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*766G>C
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser392Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

1-15819528-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819528
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819528
    reference: chr 1
allele count: 4
allele frequency: 3.32242470555011e-5
allele num: 120394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1161C>T
  hgvsp: ENST00000333868.5:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.711C>T
  hgvsp: ENST00000348549.5:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*751C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*733C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*754C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.912C>T
  hgvsp: ENST00000375890.4:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.505C>T
  hgvsp: ENST00000424908.1:c.505C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1161C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-15819533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819533
    reference: chr 1
allele count: 10
allele frequency: 8.311308366163001e-5
allele num: 120318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-3C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*746C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8324
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29172
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1159-3C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-15819540-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819540
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819540
    reference: chr 1
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-10T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-10T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*739T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-10T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-10T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-10T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-10T>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-15819541-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819541
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819542
    reference: chr 1
allele count: 18
allele frequency: 1.497878006157943e-4
allele num: 120170
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-12_709-11insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-12_1159-11insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-12_*752-11insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*737_*738insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-12_910-11insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-12_503-11insG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-12_*731-11insG
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-15819545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819545
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819545
    reference: chr 1
allele count: 5
allele frequency: 4.163266665556462e-5
allele num: 120098
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-15G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*734G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-15G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-15G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-15G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-15G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-15G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

1-15819556-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819556
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819554
    reference: chr 1
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*721_*722delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-28_1159-27delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-28_*752-27delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-28_709-27delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-28_910-27delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-28_503-27delCA
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-28_*731-27delCA
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: CTG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

1-15819573-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819573
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819572
    reference: chr 1
allele count: 3
allele frequency: 2.50928435210278e-5
allele num: 119556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-44delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-44delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-44delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-44delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-44delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*705delC
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-44delC
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-15819581-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15819581
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15819581
    reference: chr 1
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1159-51T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*731-51T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.709-51T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*698T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.910-51T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*752-51T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.503-51T>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29144
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3921
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-15820233-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820233
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820233
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+154T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+154T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+154T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*46T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+154T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+154T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+154T>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10628
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

1-15820244-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820244
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820244
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+143C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-15820246-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820246
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820246
    reference: chr 1
allele count: 5
allele frequency: 4.240162822252375e-4
allele num: 11792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+141G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+141G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.*33G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+141G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+141G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+141G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+141G>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1910
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5361
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-15820307-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820307
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820308
    reference: chr 1
allele count: 4922
allele frequency: 2.696099912357581e-1
allele num: 18256
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+79dupG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+79dupG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1237dupG
  hgvsp: ENSP00000449584.1:p.Val413GlyfsTer56
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+79dupG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+79dupG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+79dupG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+79dupG
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 27577
  bin: 2.5e0
  variant carriers: 2113
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 7.5e0
  variant carriers: 3236
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 2.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.75e1
  variant carriers: 448
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 5.25e1
  variant carriers: 465
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 1.75e1
  variant carriers: 961
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 5269
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 22692
  bin: 7.5e0
  variant carriers: 905
genotype quality: GenotypeQuality
  all individuals: 4259
  bin: 2.25e1
  variant carriers: 782
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 1.25e1
  variant carriers: 608
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 219
hgvs: p.Val413GlyfsTer56
num of homozygotes: 635
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

1-15820311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820311
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 18396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+76G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1234G>C
  hgvsp: ENSP00000449584.1:p.Gly412Arg
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32994
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly412Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

1-15820312-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820312
    reference: chr 1
allele count: 287
allele frequency: 1.548505449444265e-2
allele num: 18534
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+75T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+75T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+75T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1233T>C
  hgvsp: ENST00000546424.1:c.1233T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+75T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+75T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+75T>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 32826
  bin: 2.5e0
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 7.5e0
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 6.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 29582
  bin: 7.5e0
  variant carriers: 56
hgvs: p.Phe411Phe
num of homozygotes: 6
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

1-15820322-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820322
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 18962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+65G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+65G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+65G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1223G>A
  hgvsp: ENSP00000449584.1:p.Gly408Asp
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+65G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+65G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+65G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 10690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34168
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31235
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly408Asp
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-15820328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820328
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820328
    reference: chr 1
allele count: 4
allele frequency: 2.059308072487644e-4
allele num: 19424
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+59C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+59C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1217C>T
  hgvsp: ENSP00000449584.1:p.Ser406Phe
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+59C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+59C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+59C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+59C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser406Phe
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

1-15820334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820334
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820334
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 19988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+53T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+53T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+53T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+53T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+53T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1211T>C
  hgvsp: ENSP00000449584.1:p.Val404Ala
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+53T>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14442
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val404Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS

1-15820335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820335
    reference: chr 1
allele count: 1
allele frequency: 4.996003197442046e-5
allele num: 20016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+52G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+52G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1210G>A
  hgvsp: ENSP00000449584.1:p.Val404Met
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+52G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+52G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+52G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+52G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30020
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val404Met
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

1-15820336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820336
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 20268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+51C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+51C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1209C>T
  hgvsp: ENST00000546424.1:c.1209C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+51C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+51C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+51C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+51C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12408
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser403Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-15820336-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820336
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820335
    reference: chr 1
allele count: 1
allele frequency: 4.933885928557332e-5
allele num: 20268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+50delG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+50delG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+50delG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1208delG
  hgvsp: ENSP00000449584.1:p.Ser403ThrfsTer11
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+50delG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+50delG
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+50delG
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29777
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser403ThrfsTer11
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: GC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-15820340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820340
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820340
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 20674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1205G>A
  hgvsp: ENSP00000449584.1:p.Gly402Asp
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+47G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+47G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+47G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+47G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+47G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+47G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly402Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD

1-15820343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820343
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820343
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 21082
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+44G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+44G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1202G>A
  hgvsp: ENSP00000449584.1:p.Arg401Lys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+44G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+44G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+44G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+44G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19479
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27071
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg401Lys
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-15820351-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820351
    reference: chr 1
allele count: 1
allele frequency: 4.49034575662326e-5
allele num: 22270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1194G>C
  hgvsp: ENSP00000449584.1:p.Arg398Ser
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+36G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+36G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+36G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+36G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+36G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+36G>C
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23998
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6499
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19631
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Arg398Ser
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

1-15820352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820352
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820352
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 22538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+35G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+35G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+35G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1193G>A
  hgvsp: ENSP00000449584.1:p.Arg398Lys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+35G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+35G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+35G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24665
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6630
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Arg398Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

1-15820357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820357
    reference: chr 1
allele count: 5
allele frequency: 2.11595429538722e-4
allele num: 23630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+30G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1188G>A
  hgvsp: ENST00000546424.1:c.1188G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+30G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+30G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+30G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+30G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+30G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27216
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu396Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

1-15820360-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820360
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820360
    reference: chr 1
allele count: 3
allele frequency: 1.238338974655329e-4
allele num: 24226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+27A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1185A>G
  hgvsp: ENST00000546424.1:c.1185A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+27A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+27A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+27A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+27A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+27A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19049
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18414
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25674
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly395Gly
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-15820381-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820381
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820381
    reference: chr 1
allele count: 1
allele frequency: 3.056608387333415e-5
allele num: 32716
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+6T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+6T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1164T>A
  hgvsp: ENSP00000449584.1:p.Ser388Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+6T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+6T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+6T>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+6T>A
  variant of: http://identifiers.org/hgnc/1511
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser388Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-15820384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820384
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820384
    reference: chr 1
allele count: 1
allele frequency: 2.928086202857812e-5
allele num: 34152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.708+3G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.502+3G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*751+3G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.909+3G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1158+3G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1161G>C
  hgvsp: ENST00000546424.1:c.1161G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*730+3G>C
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7253
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1158+3G>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-15820393-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820393
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820393
    reference: chr 1
allele count: 10
allele frequency: 2.542976299460889e-4
allele num: 39324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*745G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.702G>C
  hgvsp: ENST00000348549.5:c.702G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.496G>C
  hgvsp: ENST00000424908.1:c.496G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*724G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1152G>C
  hgvsp: ENST00000546424.1:c.1152G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1152G>C
  hgvsp: ENST00000333868.5:c.1152G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.903G>C
  hgvsp: ENST00000375890.4:c.903G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35543
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11780
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Leu384Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-15820393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820393
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820393
    reference: chr 1
allele count: 1
allele frequency: 2.542976299460889e-5
allele num: 39324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.903G>A
  hgvsp: ENST00000375890.4:c.903G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.496G>A
  hgvsp: ENST00000424908.1:c.496G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.702G>A
  hgvsp: ENST00000348549.5:c.702G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1152G>A
  hgvsp: ENST00000546424.1:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1152G>A
  hgvsp: ENST00000333868.5:c.1152G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*724G>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*745G>A
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5094
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu384Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

1-15820413-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820413
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820411
    reference: chr 1
allele count: 1
allele frequency: 2.000160012801024e-5
allele num: 49996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*723_*724delCT
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.680_681delCT
  hgvsp: ENSP00000255256.7:p.Ser227Ter
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.881_882delCT
  hgvsp: ENSP00000365051.4:p.Ser294Ter
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1130_1131delCT
  hgvsp: ENSP00000330237.5:p.Ser377Ter
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1130_1131delCT
  hgvsp: ENSP00000449584.1:p.Ser377Ter
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.474_475delCT
  hgvsp: ENSP00000408691.1:p.Ser159Ter
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*702_*703delCT
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser377Ter
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CAG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-15820418-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820418
    reference: chr 1
allele count: 1
allele frequency: 1.92270717169775e-5
allele num: 52010
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.878A>T
  hgvsp: ENSP00000365051.4:p.His293Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*720A>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.677A>T
  hgvsp: ENSP00000255256.7:p.His226Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*699A>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1127A>T
  hgvsp: ENSP00000330237.5:p.His376Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1127A>T
  hgvsp: ENSP00000449584.1:p.His376Leu
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.471A>T
  hgvsp: ENSP00000408691.1:p.His158Leu
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His376Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-15820418-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820418
    reference: chr 1
allele count: 2
allele frequency: 3.845414343395501e-5
allele num: 52010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1127A>G
  hgvsp: ENSP00000449584.1:p.His376Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1127A>G
  hgvsp: ENSP00000330237.5:p.His376Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.878A>G
  hgvsp: ENSP00000365051.4:p.His293Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.471A>G
  hgvsp: ENSP00000408691.1:p.His158Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.677A>G
  hgvsp: ENSP00000255256.7:p.His226Arg
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*699A>G
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*720A>G
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31914
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His376Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-15820423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820423
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820423
    reference: chr 1
allele count: 1
allele frequency: 1.852400711321873e-5
allele num: 53984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.672G>T
  hgvsp: ENSP00000255256.7:p.Trp224Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1122G>T
  hgvsp: ENSP00000449584.1:p.Trp374Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*715G>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.466G>T
  hgvsp: ENSP00000408691.1:p.Trp156Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1122G>T
  hgvsp: ENSP00000330237.5:p.Trp374Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.873G>T
  hgvsp: ENSP00000365051.4:p.Trp291Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*694G>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp374Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-15820436-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820436
    reference: chr 1
allele count: 2
allele frequency: 3.472342789680197e-5
allele num: 57598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.860T>C
  hgvsp: ENSP00000365051.4:p.Ile287Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*702T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1109T>C
  hgvsp: ENSP00000330237.5:p.Ile370Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.453T>C
  hgvsp: ENSP00000408691.1:p.Ile152Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1109T>C
  hgvsp: ENSP00000449584.1:p.Ile370Thr
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*681T>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.659T>C
  hgvsp: ENSP00000255256.7:p.Ile220Thr
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile370Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

1-15820441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820441
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820441
    reference: chr 1
allele count: 1
allele frequency: 1.729266099467386e-5
allele num: 57828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*676C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*697C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.654C>T
  hgvsp: ENST00000348549.5:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1104C>T
  hgvsp: ENST00000333868.5:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.855C>T
  hgvsp: ENST00000375890.4:c.855C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1104C>T
  hgvsp: ENST00000546424.1:c.1104C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.448C>T
  hgvsp: ENST00000424908.1:c.448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17946
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp368Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

1-15820446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820446
    reference: chr 1
allele count: 1
allele frequency: 1.747152142008526e-5
allele num: 57236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*671C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.649C>T
  hgvsp: ENST00000348549.5:c.649C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.850C>T
  hgvsp: ENST00000375890.4:c.850C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.443C>T
  hgvsp: ENST00000424908.1:c.443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*692C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1099C>T
  hgvsp: ENST00000546424.1:c.1099C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1099C>T
  hgvsp: ENST00000333868.5:c.1099C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32421
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu367Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

1-15820448-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820448
    reference: chr 1
allele count: 272
allele frequency: 4.725175456882774e-3
allele num: 57564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.647C>A
  hgvsp: ENSP00000255256.7:p.Thr216Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1097C>A
  hgvsp: ENSP00000449584.1:p.Thr366Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*669C>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1097C>A
  hgvsp: ENSP00000330237.5:p.Thr366Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*690C>A
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.441C>A
  hgvsp: ENSP00000408691.1:p.Thr148Asn
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.848C>A
  hgvsp: ENSP00000365051.4:p.Thr283Asn
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29315
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 14258
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32539
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr366Asn
num of homozygotes: 2
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-15820456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820456
    reference: chr 1
allele count: 1
allele frequency: 1.791151710549884e-5
allele num: 55830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.639C>T
  hgvsp: ENST00000348549.5:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449584
  ensembl transcript: ENST00000546424
  gene symbol: CASP9
  hgvsc: ENST00000546424.1:c.1089C>T
  hgvsp: ENST00000546424.1:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.433C>T
  hgvsp: ENST00000424908.1:c.433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*661C>T
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.840C>T
  hgvsp: ENST00000375890.4:c.840C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000330237
  ensembl transcript: ENST00000333868
  gene symbol: CASP9
  hgvsc: ENST00000333868.5:c.1089C>T
  hgvsp: ENST00000333868.5:c.1089C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*682C>T
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12473
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8011
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr363Tyr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-15820459-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 15820459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 15820459
    reference: chr 1
allele count: 1
allele frequency: 1.811331691059267e-5
allele num: 55208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000383588
  ensembl transcript: ENST00000400777
  gene symbol: CASP9
  hgvsc: ENST00000400777.3:c.*679G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000449216
  ensembl transcript: ENST00000474305
  gene symbol: CASP9
  hgvsc: ENST00000474305.2:c.*658G>C
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000408691
  ensembl transcript: ENST00000424908
  gene symbol: CASP9
  hgvsc: ENST00000424908.1:c.430G>C
  hgvsp: ENSP00000408691.1:p.Trp144Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000365051
  ensembl transcript: ENST00000375890
  gene symbol: CASP9
  hgvsc: ENST00000375890.4:c.837G>C
  hgvsp: ENSP00000365051.4:p.Trp279Cys
  variant of: http://identifiers.org/hgnc/1511
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132906
  ensembl protein: ENSP00000255256
  ensembl transcript: ENST00000348549
  gene symbol: CASP9
  hgvsc: ENST00000348549.5:c.636G>C
  hgvsp: ENSP00000255256.7:p.Trp212Cys
  variant of: http://identifiers.org/hgnc/1511
canonical: true
consequence: missense
filter: PASS
hgvs: p.Trp362Cys
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 50309
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.833334e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.333e1

FS
type: SiteQuality
SIO_000300: 3.972e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
SIO_000300: 1.448e1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.397e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

FS
type: SiteQuality
SIO_000300: 1.936e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.833277e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.64823638706584e-4
allele num: 66738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.648e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.328e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.833626e6

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.83303e6

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.541e0

ReadPosRankSum
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SIO_000300: -4.87e-1

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.832372e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.06e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
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SIO_000300: 3.07e0

FS
type: SiteQuality
SIO_000300: 9.16e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.225e1

QD
type: SiteQuality
SIO_000300: 1.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.82994e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.823142e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

FS
type: SiteQuality
SIO_000300: 5.069e0

VQSLOD
type: SiteQuality
SIO_000300: -1.506e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515335192144502e-5
allele num: 65992
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.625e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.415e1

MQRankSum
type: SiteQuality
SIO_000300: -4.03e-1

DP
type: SiteQuality
SIO_000300: 2.52676e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 4.101e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515427047341941e-5
allele num: 65988
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.261e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.81e0

DP
type: SiteQuality
SIO_000300: 2.527746e6

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
type: SiteQuality
SIO_000300: 6.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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FS
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DP
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.908838684106223e-5
allele num: 10092
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66004
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8540
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 2.604618857440528e-4
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

East Asian
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allele num: 8540
num of homozygotes: 0

South Asian
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FS
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MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 87
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
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allele frequency: 8.682062858135092e-5
allele num: 11518
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.211e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 3.531e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.761e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.113e0

DP
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SIO_000300: 2.542016e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.020509257860875e-5
allele num: 66214
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.2266e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 2.547771e6

VQSLOD
type: SiteQuality
SIO_000300: -1.881e0

QD
type: SiteQuality
SIO_000300: 1.001e1

ReadPosRankSum
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SIO_000300: 1.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66246
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East Asian
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allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
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allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 6.111e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.04e1

BaseQRankSum
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SIO_000300: -4.998e0

VQSLOD
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 2.548661e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 68

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.786651008025054e-5
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 65
allele frequency: 9.802147424297261e-4
allele num: 66312
num of homozygotes: 0

DP
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SIO_000300: 2.554693e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
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SIO_000300: -3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.815e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.055e0

QD
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SIO_000300: 1.227e1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

FS
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.686e0

MQRankSum
type: SiteQuality
SIO_000300: -1.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

DP
type: SiteQuality
SIO_000300: 2.548145e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10234
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014136299243452e-5
allele num: 66354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

FS
type: SiteQuality
SIO_000300: 3.035e0

DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.151e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.769441187964049e-5
allele num: 10236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.08e0

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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MQ
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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allele num: 16470
num of homozygotes: 0

African
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505797319680771e-5
allele num: 66410
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 11528
num of homozygotes: 0

Other
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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African
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Other
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East Asian
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South Asian
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European (Finnish)
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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MQRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.166316771635176e-4
allele num: 8574
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10260
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European (Non-Finnish)
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allele count: 0
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allele num: 66450
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Latino
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South Asian
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MQ
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SIO_000300: 5.93e1

BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.106000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.52e-1

FS
type: SiteQuality
SIO_000300: 6.546e0

DP
type: SiteQuality
SIO_000300: 2.551043e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008785654110001e-5
allele num: 66472
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e0

FS
type: SiteQuality
SIO_000300: 2.544e0

MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
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SIO_000300: 2.551303e6

QD
type: SiteQuality
SIO_000300: 1.159e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.379999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.83e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.667444574095683e-4
allele num: 8570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.32e-1

DP
type: SiteQuality
SIO_000300: 2.551677e6

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.142e1

GenotypeQuality
all individuals: 3934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.554e0

DP
type: SiteQuality
SIO_000300: 2.551357e6

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 1.1459e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
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South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.501e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 2.551035e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.904e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -2.228e-1

QD
type: SiteQuality
SIO_000300: 8.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50407604608489e-5
allele num: 66486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.036e0

QD
type: SiteQuality
SIO_000300: 1.074e1

DP
type: SiteQuality
SIO_000300: 2.550323e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.804e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
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East Asian
type: Population
allele count: 14
allele frequency: 1.633605600933489e-3
allele num: 8570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.550098e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 6.075334143377886e-5
allele num: 16460
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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DP
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -9.82e-1

QD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011413256241154e-5
allele num: 66414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.906e0

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 2.547228e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.081245439065921e-5
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66308
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.980329823167097e-4
allele num: 10066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.42e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.004e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 2.542259e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
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allele frequency: 6.081245439065921e-4
allele num: 16444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.152e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

DP
type: SiteQuality
SIO_000300: 2.541056e6

MQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.822e0

QD
type: SiteQuality
SIO_000300: 1.24e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.49e-2

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.441e1

FS
type: SiteQuality
SIO_000300: 2.213e0

DP
type: SiteQuality
SIO_000300: 2.537123e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.480076561684357e-4
allele num: 11494
num of homozygotes: 0

African
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allele count: 13
allele frequency: 1.303911735205617e-3
allele num: 9970
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 7.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.14e-1

QD
type: SiteQuality
SIO_000300: 1.583e1

DP
type: SiteQuality
SIO_000300: 2.536988e6

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.533776635937736e-5
allele num: 66170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21713729308666e-4
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.16e-1

DP
type: SiteQuality
SIO_000300: 2.534679e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

FS
type: SiteQuality
SIO_000300: 8.672000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512447442451375e-5
allele num: 66118
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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African
type: Population
allele count: 3
allele frequency: 3.092783505154639e-4
allele num: 9700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.019e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.506937e6

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65848
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16422
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.038205980066445e-4
allele num: 9632
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 94
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.713e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.76803e5

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.051e-1

MQ
type: SiteQuality
SIO_000300: 6.213e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 7.69941484447182e-4
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.84e-2

QD
type: SiteQuality
SIO_000300: 1.261e1

VQSLOD
type: SiteQuality
SIO_000300: -1.177e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

FS
type: SiteQuality
SIO_000300: 2.981e0

DP
type: SiteQuality
SIO_000300: 1.8059e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

GenotypeQuality
all individuals: 355
bin: 4.75e1
variant carriers: 333

GenotypeQuality
all individuals: 620
bin: 6.75e1
variant carriers: 81

GenotypeQuality
all individuals: 170
bin: 3.25e1
variant carriers: 54

GenotypeQuality
all individuals: 3507
bin: 6.25e1
variant carriers: 55

GenotypeQuality
all individuals: 210
bin: 2.75e1
variant carriers: 63

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 42

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 56

GenotypeQuality
all individuals: 558
bin: 7.75e1
variant carriers: 432

GenotypeQuality
all individuals: 4056
bin: 9.75e1
variant carriers: 4038

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 265

European (Non-Finnish)
type: Population
allele count: 1872
allele frequency: 2.826086956521739e-1
allele num: 6624
num of homozygotes: 209

Other
type: Population
allele count: 51
allele frequency: 2.5e-1
allele num: 204
num of homozygotes: 7

African
type: Population
allele count: 1002
allele frequency: 4.53393665158371e-1
allele num: 2210
num of homozygotes: 209

East Asian
type: Population
allele count: 30
allele frequency: 8.47457627118644e-2
allele num: 354
num of homozygotes: 1

South Asian
type: Population
allele count: 1633
allele frequency: 2.063953488372093e-1
allele num: 7912
num of homozygotes: 175

Latino
type: Population
allele count: 62
allele frequency: 2.052980132450331e-1
allele num: 302
num of homozygotes: 6

European (Finnish)
type: Population
allele count: 272
allele frequency: 4.184615384615384e-1
allele num: 650
num of homozygotes: 28

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.037e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 4.21289e5

VQSLOD
type: SiteQuality
SIO_000300: 5.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.596e1

GenotypeQuality
all individuals: 5439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30113
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 1.09e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.60314e5

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2659
bin: 1.25e1
variant carriers: 32

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1077
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 297
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 434
bin: 9.75e1
variant carriers: 286

GenotypeQuality
all individuals: 5517
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 16

Other
type: Population
allele count: 3
allele frequency: 1.456310679611651e-2
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 150
allele frequency: 2.179598953792502e-2
allele num: 6882
num of homozygotes: 3

Latino
type: Population
allele count: 2
allele frequency: 6.369426751592357e-3
allele num: 314
num of homozygotes: 0

South Asian
type: Population
allele count: 115
allele frequency: 1.452386966405658e-2
allele num: 7918
num of homozygotes: 2

African
type: Population
allele count: 10
allele frequency: 4.440497335701598e-3
allele num: 2252
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.194539249146758e-2
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.389e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.64e-2

FS
type: SiteQuality
SIO_000300: 8.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.69171e5

GenotypeQuality
all individuals: 5432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.81214e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

QD
type: SiteQuality
SIO_000300: 1.213e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 9559
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 499
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.028916268544129e-4
allele num: 7954
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.93e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.409e0

QD
type: SiteQuality
SIO_000300: 2.087e1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 3.99827e5

GenotypeQuality
all individuals: 5893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30421
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2357
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2444
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: -2.536e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.68e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

DP
type: SiteQuality
SIO_000300: 4.17373e5

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.088307440719542e-4
allele num: 2446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.819e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 4.2014e5

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.69e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.836e0

QD
type: SiteQuality
SIO_000300: 2.349e1

GenotypeQuality
all individuals: 2021
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29777
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.038e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

DP
type: SiteQuality
SIO_000300: 4.28011e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 9.42e0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12408
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.251877816725087e-4
allele num: 7988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.34e-2

FS
type: SiteQuality
SIO_000300: 2.038e0

DP
type: SiteQuality
SIO_000300: 4.28011e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.834e1

QD
type: SiteQuality
SIO_000300: 9.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 1977
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8010
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 4.45008e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.937e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 155
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2568
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

VQSLOD
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BaseQRankSum
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SIO_000300: -1.38e0

QD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 4.56193e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.05909764880322e-4
allele num: 9442
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 556
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 2.73e0

InbreedingCoeff
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SIO_000300: -4.21e-2

QD
type: SiteQuality
SIO_000300: 1.133e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.91434e5

VQSLOD
type: SiteQuality
SIO_000300: -1.073e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2682
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

QD
type: SiteQuality
SIO_000300: 1.042e1

VQSLOD
type: SiteQuality
SIO_000300: -1.824e0

MQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 4.97231e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 4.878048780487805e-4
allele num: 10250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

VQSLOD
type: SiteQuality
SIO_000300: -3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 3.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 5.20557e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 1.054111033028812e-3
allele num: 2846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.434e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.484e0

DP
type: SiteQuality
SIO_000300: 5.33348e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.347594261774788e-5
allele num: 15754
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 6.41321e5

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3660
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 6.025548324897566e-5
allele num: 16596
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 2.793296089385475e-3
allele num: 358
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 4.5773573390296e-4
allele num: 19662
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.01385e5

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11780
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.085952598921778e-5
allele num: 19662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

QD
type: SiteQuality
SIO_000300: 1.275e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 1.156e0

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

DP
type: SiteQuality
SIO_000300: 7.01385e5

GenotypeQuality
all individuals: 643
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15628
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.892565200467108e-5
allele num: 25690
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.87127e5

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 2.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.3e0

GenotypeQuality
all individuals: 1564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2523
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.016129032258065e-4
allele num: 4960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.816e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

VQSLOD
type: SiteQuality
SIO_000300: -6.135e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 1.061e1

DP
type: SiteQuality
SIO_000300: 8.00139e5

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.518763796909492e-4
allele num: 3624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.135e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 8.00139e5

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

QD
type: SiteQuality
SIO_000300: 1.061e1

FS
type: SiteQuality
SIO_000300: 5.816e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

GenotypeQuality
all individuals: 454
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
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GenotypeQuality
all individuals: 405
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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variant carriers: 1

GenotypeQuality
all individuals: 17058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.577049649449134e-5
allele num: 27956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1932
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.05e0

MQ
type: SiteQuality
SIO_000300: 5.876e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

FS
type: SiteQuality
SIO_000300: 1.317e0

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.592e0

DP
type: SiteQuality
SIO_000300: 8.16373e5

GenotypeQuality
all individuals: 1118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
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GenotypeQuality
all individuals: 1643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.686726847208291e-5
allele num: 29910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 6.7e0

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

DP
type: SiteQuality
SIO_000300: 8.37149e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.5e0
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GenotypeQuality
all individuals: 1599
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 389
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GenotypeQuality
all individuals: 649
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variant carriers: 0

GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.346316283435007e-4
allele num: 4262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29982
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.535e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 4.011e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.479e0

DP
type: SiteQuality
SIO_000300: 8.38049e5

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
all individuals: 1247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.25e1
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GenotypeQuality
all individuals: 593
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.984914648670107e-4
allele num: 5038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2062
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.126e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 8.24301e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1249
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 2403
bin: 7.5e0
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GenotypeQuality
all individuals: 367
bin: 7.75e1
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GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 373
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1592
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 374
bin: 9.75e1
variant carriers: 253

GenotypeQuality
all individuals: 565
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16596
bin: 6.25e1
variant carriers: 5

African
type: Population
allele count: 215
allele frequency: 3.9536594336153e-2
allele num: 5438
num of homozygotes: 2

Other
type: Population
allele count: 3
allele frequency: 6.276150627615063e-3
allele num: 478
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 2.946768060836502e-3
allele num: 10520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.585414189456996e-3
allele num: 5046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 5.034570718936699e-4
allele num: 29794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.173e1

FS
type: SiteQuality
SIO_000300: 1.146e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.29495e5

GenotypeQuality
all individuals: 33680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.25e1
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GenotypeQuality
all individuals: 14878
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 2.75e1
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GenotypeQuality
all individuals: 127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.455425017277125e-5
allele num: 28940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

DP
type: SiteQuality
SIO_000300: 7.99386e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 6.05e0