1-114682252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682252
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682252
    reference: chr 1
allele count: 1
allele frequency: 8.33625102119075e-6
allele num: 119958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*198C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.497C>T
  hgvsp: ENSP00000376974.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.242C>T
  hgvsp: ENSP00000477219.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.242C>T
  hgvsp: ENSP00000476507.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.497C>T
  hgvsp: ENSP00000476396.1:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*198C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.242C>T
  hgvsp: ENSP00000358560.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.242C>T
  hgvsp: ENSP00000477344.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.242C>T
  hgvsp: ENSP00000476616.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro81Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

1-114682257-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682257
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682257
    reference: chr 1
allele count: 56
allele frequency: 4.660297593289171e-4
allele num: 120164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.237A>G
  hgvsp: ENST00000608203.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.492A>G
  hgvsp: ENST00000610222.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.237A>G
  hgvsp: ENST00000369547.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.237A>G
  hgvsp: ENST00000609117.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.237A>G
  hgvsp: ENST00000607941.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*193A>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.492A>G
  hgvsp: ENST00000393296.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*193A>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.237A>G
  hgvsp: ENST00000609577.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22051
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30633
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr79Thr
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-114682261-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682261
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682261
    reference: chr 1
allele count: 1
allele frequency: 8.312413758707254e-6
allele num: 120302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*189C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*189C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.233C>G
  hgvsp: ENSP00000477344.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.233C>G
  hgvsp: ENSP00000476616.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.233C>G
  hgvsp: ENSP00000477219.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.233C>G
  hgvsp: ENSP00000476507.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.488C>G
  hgvsp: ENSP00000376974.1:p.Thr163Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.233C>G
  hgvsp: ENSP00000358560.1:p.Thr78Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.488C>G
  hgvsp: ENSP00000476396.1:p.Thr163Ser
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6619
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr78Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

1-114682264-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682264
    reference: chr 1
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.485A>T
  hgvsp: ENSP00000476396.1:p.Gln162Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.485A>T
  hgvsp: ENSP00000376974.1:p.Gln162Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.230A>T
  hgvsp: ENSP00000477344.1:p.Gln77Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.230A>T
  hgvsp: ENSP00000476616.1:p.Gln77Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*186A>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*186A>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.230A>T
  hgvsp: ENSP00000477219.1:p.Gln77Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.230A>T
  hgvsp: ENSP00000358560.1:p.Gln77Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.230A>T
  hgvsp: ENSP00000476507.1:p.Gln77Leu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln77Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-114682266-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682266
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682266
    reference: chr 1
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.483G>T
  hgvsp: ENST00000393296.1:c.483G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.228G>T
  hgvsp: ENST00000608203.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.228G>T
  hgvsp: ENST00000609577.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.228G>T
  hgvsp: ENST00000609117.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.228G>T
  hgvsp: ENST00000369547.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.483G>T
  hgvsp: ENST00000610222.1:c.483G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.228G>T
  hgvsp: ENST00000607941.1:c.228G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*184G>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*184G>T
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30305
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22534
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg76Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

1-114682276-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682276
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682276
    reference: chr 1
allele count: 3
allele frequency: 2.48216974731512e-5
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.218G>A
  hgvsp: ENSP00000476616.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.374G>A
  hgvsp: ENSP00000476324.1:p.Arg125Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*174G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.218G>A
  hgvsp: ENSP00000477344.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.473G>A
  hgvsp: ENSP00000376974.1:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.218G>A
  hgvsp: ENSP00000477219.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.218G>A
  hgvsp: ENSP00000358560.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.218G>A
  hgvsp: ENSP00000476507.1:p.Arg73Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.473G>A
  hgvsp: ENSP00000476396.1:p.Arg158Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*174G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg73Gln
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

1-114682277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682277
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682277
    reference: chr 1
allele count: 7
allele frequency: 5.790962788927679e-5
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.472C>T
  hgvsp: ENSP00000476396.1:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.217C>T
  hgvsp: ENSP00000477219.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.472C>T
  hgvsp: ENSP00000376974.1:p.Arg158Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.217C>T
  hgvsp: ENSP00000476507.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*173C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.217C>T
  hgvsp: ENSP00000358560.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.373C>T
  hgvsp: ENSP00000476324.1:p.Arg125Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.217C>T
  hgvsp: ENSP00000476616.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.217C>T
  hgvsp: ENSP00000477344.1:p.Arg73Trp
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg73Trp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

1-114682278-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682278
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682278
    reference: chr 1
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.216C>G
  hgvsp: ENST00000609577.1:c.216C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*172C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.471C>G
  hgvsp: ENST00000610222.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.471C>G
  hgvsp: ENST00000393296.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.372C>G
  hgvsp: ENST00000608879.1:c.372C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*172C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.216C>G
  hgvsp: ENST00000609117.1:c.216C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.216C>G
  hgvsp: ENST00000607941.1:c.216C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.216C>G
  hgvsp: ENST00000369547.1:c.216C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.216C>G
  hgvsp: ENST00000608203.1:c.216C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr72Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-114682285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682285
    reference: chr 1
allele count: 3
allele frequency: 2.477987213585978e-5
allele num: 121066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.464G>A
  hgvsp: ENSP00000476396.1:p.Arg155His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.209G>A
  hgvsp: ENSP00000477344.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.464G>A
  hgvsp: ENSP00000376974.1:p.Arg155His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.209G>A
  hgvsp: ENSP00000476507.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.365G>A
  hgvsp: ENSP00000476324.1:p.Arg122His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.209G>A
  hgvsp: ENSP00000477219.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.209G>A
  hgvsp: ENSP00000476616.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.209G>A
  hgvsp: ENSP00000358560.1:p.Arg70His
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg70His
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-114682286-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682286
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682286
    reference: chr 1
allele count: 466
allele frequency: 3.847360512541074e-3
allele num: 121122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.208C>T
  hgvsp: ENSP00000476507.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.208C>T
  hgvsp: ENSP00000358560.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.208C>T
  hgvsp: ENSP00000477344.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.208C>T
  hgvsp: ENSP00000476616.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.463C>T
  hgvsp: ENSP00000376974.1:p.Arg155Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*164C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.364C>T
  hgvsp: ENSP00000476324.1:p.Arg122Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.208C>T
  hgvsp: ENSP00000477219.1:p.Arg70Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.463C>T
  hgvsp: ENSP00000476396.1:p.Arg155Cys
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 30251
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23274
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg70Cys
num of homozygotes: 9
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

1-114682289-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682289
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682289
    reference: chr 1
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.361A>T
  hgvsp: ENSP00000476324.1:p.Met121Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.205A>T
  hgvsp: ENSP00000476507.1:p.Met69Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.460A>T
  hgvsp: ENSP00000476396.1:p.Met154Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.205A>T
  hgvsp: ENSP00000476616.1:p.Met69Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.205A>T
  hgvsp: ENSP00000477344.1:p.Met69Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.460A>T
  hgvsp: ENSP00000376974.1:p.Met154Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.205A>T
  hgvsp: ENSP00000477219.1:p.Met69Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*161A>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*161A>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.205A>T
  hgvsp: ENSP00000358560.1:p.Met69Leu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met69Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

1-114682292-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682292
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682292
    reference: chr 1
allele count: 9
allele frequency: 7.424272421302712e-5
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.202A>T
  hgvsp: ENSP00000477219.1:p.Ile68Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.358A>T
  hgvsp: ENSP00000476324.1:p.Ile120Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.202A>T
  hgvsp: ENSP00000476507.1:p.Ile68Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.202A>T
  hgvsp: ENSP00000358560.1:p.Ile68Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.457A>T
  hgvsp: ENSP00000376974.1:p.Ile153Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.457A>T
  hgvsp: ENSP00000476396.1:p.Ile153Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.202A>T
  hgvsp: ENSP00000476616.1:p.Ile68Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*158A>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.202A>T
  hgvsp: ENSP00000477344.1:p.Ile68Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*158A>T
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile68Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

1-114682293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682293
    reference: chr 1
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.456C>T
  hgvsp: ENST00000610222.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*157C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.201C>T
  hgvsp: ENST00000607941.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.201C>T
  hgvsp: ENST00000609577.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.201C>T
  hgvsp: ENST00000369547.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.357C>T
  hgvsp: ENST00000608879.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.456C>T
  hgvsp: ENST00000393296.1:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.201C>T
  hgvsp: ENST00000608203.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.201C>T
  hgvsp: ENST00000609117.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His67His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-114682295-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682295
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682295
    reference: chr 1
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.199C>G
  hgvsp: ENSP00000477344.1:p.His67Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.199C>G
  hgvsp: ENSP00000477219.1:p.His67Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.355C>G
  hgvsp: ENSP00000476324.1:p.His119Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.454C>G
  hgvsp: ENSP00000376974.1:p.His152Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.199C>G
  hgvsp: ENSP00000476507.1:p.His67Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.199C>G
  hgvsp: ENSP00000476616.1:p.His67Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*155C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.454C>G
  hgvsp: ENSP00000476396.1:p.His152Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.199C>G
  hgvsp: ENSP00000358560.1:p.His67Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*155C>G
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His67Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

1-114682295-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682295
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682295
    reference: chr 1
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.355C>A
  hgvsp: ENSP00000476324.1:p.His119Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.199C>A
  hgvsp: ENSP00000476507.1:p.His67Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.454C>A
  hgvsp: ENSP00000476396.1:p.His152Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.454C>A
  hgvsp: ENSP00000376974.1:p.His152Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.199C>A
  hgvsp: ENSP00000358560.1:p.His67Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.199C>A
  hgvsp: ENSP00000477219.1:p.His67Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*155C>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.199C>A
  hgvsp: ENSP00000476616.1:p.His67Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.199C>A
  hgvsp: ENSP00000477344.1:p.His67Asn
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*155C>A
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23590
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His67Asn
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-114682296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682296
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682296
    reference: chr 1
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.198G>A
  hgvsp: ENST00000608203.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.198G>A
  hgvsp: ENST00000607941.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.198G>A
  hgvsp: ENST00000609117.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.198G>A
  hgvsp: ENST00000609577.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.453G>A
  hgvsp: ENST00000393296.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.354G>A
  hgvsp: ENST00000608879.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.453G>A
  hgvsp: ENST00000610222.1:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.198G>A
  hgvsp: ENST00000369547.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*154G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*154G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu66Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

1-114682300-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682300
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682300
    reference: chr 1
allele count: 1
allele frequency: 8.245246615326264e-6
allele num: 121282
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.194A>G
  hgvsp: ENSP00000477344.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.194A>G
  hgvsp: ENSP00000477219.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.449A>G
  hgvsp: ENSP00000476396.1:p.Lys150Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*150A>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.194A>G
  hgvsp: ENSP00000358560.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.350A>G
  hgvsp: ENSP00000476324.1:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.449A>G
  hgvsp: ENSP00000376974.1:p.Lys150Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.194A>G
  hgvsp: ENSP00000476507.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.194A>G
  hgvsp: ENSP00000476616.1:p.Lys65Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*150A>G
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys65Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-114682306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682306
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682306
    reference: chr 1
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.443C>T
  hgvsp: ENSP00000376974.1:p.Ser148Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.188C>T
  hgvsp: ENSP00000476616.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.188C>T
  hgvsp: ENSP00000358560.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*144C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.443C>T
  hgvsp: ENSP00000476396.1:p.Ser148Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.188C>T
  hgvsp: ENSP00000477344.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.188C>T
  hgvsp: ENSP00000477219.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.344C>T
  hgvsp: ENSP00000476324.1:p.Ser115Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.188C>T
  hgvsp: ENSP00000476507.1:p.Ser63Leu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser63Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-114682309-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682309
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682309
    reference: chr 1
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.185T>C
  hgvsp: ENSP00000476507.1:p.Met62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*141T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.185T>C
  hgvsp: ENSP00000477219.1:p.Met62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.185T>C
  hgvsp: ENSP00000358560.1:p.Met62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*141T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.185T>C
  hgvsp: ENSP00000476616.1:p.Met62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.341T>C
  hgvsp: ENSP00000476324.1:p.Met114Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.440T>C
  hgvsp: ENSP00000476396.1:p.Met147Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.440T>C
  hgvsp: ENSP00000376974.1:p.Met147Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.185T>C
  hgvsp: ENSP00000477344.1:p.Met62Thr
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met62Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

1-114682309-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682309
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682309
    reference: chr 1
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.440T>A
  hgvsp: ENSP00000476396.1:p.Met147Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.440T>A
  hgvsp: ENSP00000376974.1:p.Met147Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.185T>A
  hgvsp: ENSP00000476616.1:p.Met62Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.185T>A
  hgvsp: ENSP00000476507.1:p.Met62Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.185T>A
  hgvsp: ENSP00000477219.1:p.Met62Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.185T>A
  hgvsp: ENSP00000358560.1:p.Met62Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*141T>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*141T>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.341T>A
  hgvsp: ENSP00000476324.1:p.Met114Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.185T>A
  hgvsp: ENSP00000477344.1:p.Met62Lys
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met62Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

1-114682317-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682317
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682317
    reference: chr 1
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.432G>A
  hgvsp: ENST00000610222.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.177G>A
  hgvsp: ENST00000609117.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.177G>A
  hgvsp: ENST00000607941.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.177G>A
  hgvsp: ENST00000608203.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.177G>A
  hgvsp: ENST00000609577.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.177G>A
  hgvsp: ENST00000369547.1:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.432G>A
  hgvsp: ENST00000393296.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.333G>A
  hgvsp: ENST00000608879.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23711
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50841
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu59Glu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-114682322-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682322
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682322
    reference: chr 1
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.172G>T
  hgvsp: ENSP00000477344.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.328G>T
  hgvsp: ENSP00000476324.1:p.Ala110Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.427G>T
  hgvsp: ENSP00000476396.1:p.Ala143Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.172G>T
  hgvsp: ENSP00000477219.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.427G>T
  hgvsp: ENSP00000376974.1:p.Ala143Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.172G>T
  hgvsp: ENSP00000358560.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.172G>T
  hgvsp: ENSP00000476507.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*128G>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.172G>T
  hgvsp: ENSP00000476616.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*128G>T
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala58Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-114682329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682329
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682329
    reference: chr 1
allele count: 6
allele frequency: 4.945516888940176e-5
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.420T>C
  hgvsp: ENST00000610222.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.165T>C
  hgvsp: ENST00000608203.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.165T>C
  hgvsp: ENST00000607941.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.420T>C
  hgvsp: ENST00000393296.1:c.420T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.165T>C
  hgvsp: ENST00000369547.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.165T>C
  hgvsp: ENST00000609577.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.165T>C
  hgvsp: ENST00000609117.1:c.165T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.321T>C
  hgvsp: ENST00000608879.1:c.321T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*121T>C
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp55Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-114682331-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682331
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682331
    reference: chr 1
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.319G>C
  hgvsp: ENSP00000476324.1:p.Asp107His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*119G>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.163G>C
  hgvsp: ENSP00000476616.1:p.Asp55His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.163G>C
  hgvsp: ENSP00000477219.1:p.Asp55His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.163G>C
  hgvsp: ENSP00000477344.1:p.Asp55His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.163G>C
  hgvsp: ENSP00000358560.1:p.Asp55His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.418G>C
  hgvsp: ENSP00000476396.1:p.Asp140His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*119G>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.418G>C
  hgvsp: ENSP00000376974.1:p.Asp140His
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.163G>C
  hgvsp: ENSP00000476507.1:p.Asp55His
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp55His
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

1-114682338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682338
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682338
    reference: chr 1
allele count: 4
allele frequency: 3.297826732183491e-5
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.156G>A
  hgvsp: ENST00000608203.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.156G>A
  hgvsp: ENST00000369547.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.312G>A
  hgvsp: ENST00000608879.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.411G>A
  hgvsp: ENST00000610222.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.411G>A
  hgvsp: ENST00000393296.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.156G>A
  hgvsp: ENST00000609117.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.156G>A
  hgvsp: ENST00000609577.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.156G>A
  hgvsp: ENST00000607941.1:c.156G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*112G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*112G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr52Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-114682355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682355
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682355
    reference: chr 1
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.139G>A
  hgvsp: ENSP00000477219.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.139G>A
  hgvsp: ENSP00000358560.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.295G>A
  hgvsp: ENSP00000476324.1:p.Val99Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.139G>A
  hgvsp: ENSP00000477344.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.139G>A
  hgvsp: ENSP00000476616.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*95G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.394G>A
  hgvsp: ENSP00000376974.1:p.Val132Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.139G>A
  hgvsp: ENSP00000476507.1:p.Val47Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.394G>A
  hgvsp: ENSP00000476396.1:p.Val132Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*95G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29966
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val47Met
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

1-114682356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682356
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682356
    reference: chr 1
allele count: 85
allele frequency: 7.024793388429752e-4
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.138C>T
  hgvsp: ENST00000609117.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.138C>T
  hgvsp: ENST00000607941.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.393C>T
  hgvsp: ENST00000610222.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.138C>T
  hgvsp: ENST00000608203.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.393C>T
  hgvsp: ENST00000393296.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.294C>T
  hgvsp: ENST00000608879.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.138C>T
  hgvsp: ENST00000369547.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.138C>T
  hgvsp: ENST00000609577.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29943
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23555
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala46Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-114682359-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682359
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682359
    reference: chr 1
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.291G>C
  hgvsp: ENST00000608879.1:c.291G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.135G>C
  hgvsp: ENST00000608203.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.390G>C
  hgvsp: ENST00000393296.1:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.135G>C
  hgvsp: ENST00000609577.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.135G>C
  hgvsp: ENST00000607941.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.390G>C
  hgvsp: ENST00000610222.1:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.135G>C
  hgvsp: ENST00000609117.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.135G>C
  hgvsp: ENST00000369547.1:c.135G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala45Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

1-114682359-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682359
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682359
    reference: chr 1
allele count: 3
allele frequency: 2.481225394514838e-5
allele num: 120908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.135G>A
  hgvsp: ENST00000607941.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.135G>A
  hgvsp: ENST00000608203.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.390G>A
  hgvsp: ENST00000393296.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.135G>A
  hgvsp: ENST00000369547.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.390G>A
  hgvsp: ENST00000610222.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.291G>A
  hgvsp: ENST00000608879.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.135G>A
  hgvsp: ENST00000609117.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.135G>A
  hgvsp: ENST00000609577.1:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala45Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-114682360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682360
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682360
    reference: chr 1
allele count: 2
allele frequency: 1.654506047219603e-5
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.290C>T
  hgvsp: ENSP00000476324.1:p.Ala97Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*90C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.389C>T
  hgvsp: ENSP00000376974.1:p.Ala130Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.134C>T
  hgvsp: ENSP00000476507.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.134C>T
  hgvsp: ENSP00000476616.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.134C>T
  hgvsp: ENSP00000358560.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*90C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.134C>T
  hgvsp: ENSP00000477344.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.389C>T
  hgvsp: ENSP00000476396.1:p.Ala130Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.134C>T
  hgvsp: ENSP00000477219.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50174
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala45Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

1-114682365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682365
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682365
    reference: chr 1
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.384G>A
  hgvsp: ENST00000393296.1:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.129G>A
  hgvsp: ENST00000608203.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.285G>A
  hgvsp: ENST00000608879.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.129G>A
  hgvsp: ENST00000607941.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.129G>A
  hgvsp: ENST00000609577.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*85G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.384G>A
  hgvsp: ENST00000610222.1:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.129G>A
  hgvsp: ENST00000369547.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*85G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.129G>A
  hgvsp: ENST00000609117.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu43Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-114682375-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682375
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682375
    reference: chr 1
allele count: 3
allele frequency: 2.496089459846241e-5
allele num: 120188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.119T>C
  hgvsp: ENSP00000476616.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.374T>C
  hgvsp: ENSP00000476396.1:p.Leu125Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.119T>C
  hgvsp: ENSP00000477219.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.275T>C
  hgvsp: ENSP00000476324.1:p.Leu92Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*75T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.119T>C
  hgvsp: ENSP00000476507.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.119T>C
  hgvsp: ENSP00000358560.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.374T>C
  hgvsp: ENSP00000376974.1:p.Leu125Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*75T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.119T>C
  hgvsp: ENSP00000477344.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu40Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

1-114682378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682378
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682378
    reference: chr 1
allele count: 1
allele frequency: 8.328475056217207e-6
allele num: 120070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*72C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.116C>T
  hgvsp: ENSP00000477219.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.371C>T
  hgvsp: ENSP00000376974.1:p.Thr124Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.371C>T
  hgvsp: ENSP00000476396.1:p.Thr124Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.116C>T
  hgvsp: ENSP00000477344.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.116C>T
  hgvsp: ENSP00000476507.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*72C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.116C>T
  hgvsp: ENSP00000476616.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.272C>T
  hgvsp: ENSP00000476324.1:p.Thr91Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.116C>T
  hgvsp: ENSP00000358560.1:p.Thr39Ile
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr39Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-114682386-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682386
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682386
    reference: chr 1
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.108C>A
  hgvsp: ENSP00000476507.1:p.Asp36Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.108C>A
  hgvsp: ENSP00000477344.1:p.Asp36Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.108C>A
  hgvsp: ENSP00000476616.1:p.Asp36Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.108C>A
  hgvsp: ENSP00000477219.1:p.Asp36Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.363C>A
  hgvsp: ENSP00000476396.1:p.Asp121Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*64C>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.363C>A
  hgvsp: ENSP00000376974.1:p.Asp121Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.264C>A
  hgvsp: ENSP00000476324.1:p.Asp88Glu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*64C>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.108C>A
  hgvsp: ENSP00000358560.1:p.Asp36Glu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp36Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-114682401-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682401
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682401
    reference: chr 1
allele count: 2
allele frequency: 1.693164694129798e-5
allele num: 118122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.348G>A
  hgvsp: ENST00000610222.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.348G>A
  hgvsp: ENST00000393296.1:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.93G>A
  hgvsp: ENST00000609117.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*49G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*49G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.93G>A
  hgvsp: ENST00000607941.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.93G>A
  hgvsp: ENST00000608203.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.93G>A
  hgvsp: ENST00000369547.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.249G>A
  hgvsp: ENST00000608879.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.93G>A
  hgvsp: ENST00000609577.1:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala31Ala
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

1-114682402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682402
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682402
    reference: chr 1
allele count: 1
allele frequency: 8.471848048933394e-6
allele num: 118038
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.92C>T
  hgvsp: ENSP00000477344.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.92C>T
  hgvsp: ENSP00000476507.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.92C>T
  hgvsp: ENSP00000476616.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.92C>T
  hgvsp: ENSP00000477219.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.92C>T
  hgvsp: ENSP00000358560.1:p.Ala31Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.347C>T
  hgvsp: ENSP00000476396.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.248C>T
  hgvsp: ENSP00000476324.1:p.Ala83Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.347C>T
  hgvsp: ENSP00000376974.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala31Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

1-114682418-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682418
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682418
    reference: chr 1
allele count: 1
allele frequency: 8.592984687301287e-6
allele num: 116374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.76T>C
  hgvsp: ENSP00000477219.1:p.Phe26Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.76T>C
  hgvsp: ENSP00000358560.1:p.Phe26Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.331T>C
  hgvsp: ENSP00000476396.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.331T>C
  hgvsp: ENSP00000376974.1:p.Phe111Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.76T>C
  hgvsp: ENSP00000476616.1:p.Phe26Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.76T>C
  hgvsp: ENSP00000477344.1:p.Phe26Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.76T>C
  hgvsp: ENSP00000476507.1:p.Phe26Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.232T>C
  hgvsp: ENSP00000476324.1:p.Phe78Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*32T>C
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe26Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum

1-114682424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682424
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682424
    reference: chr 1
allele count: 35
allele frequency: 3.036929057337221e-4
allele num: 115248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.70C>T
  hgvsp: ENSP00000477219.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.70C>T
  hgvsp: ENSP00000476507.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.226C>T
  hgvsp: ENSP00000476324.1:p.Pro76Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*26C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.70C>T
  hgvsp: ENSP00000477344.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.70C>T
  hgvsp: ENSP00000358560.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.325C>T
  hgvsp: ENSP00000476396.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.325C>T
  hgvsp: ENSP00000376974.1:p.Pro109Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.70C>T
  hgvsp: ENSP00000476616.1:p.Pro24Ser
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27146
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro24Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-114682425-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682425
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682425
    reference: chr 1
allele count: 35
allele frequency: 3.037192592721151e-4
allele num: 115238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.324C>G
  hgvsp: ENSP00000476396.1:p.Ser108Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.324C>G
  hgvsp: ENSP00000376974.1:p.Ser108Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.69C>G
  hgvsp: ENSP00000476507.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*25C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.69C>G
  hgvsp: ENSP00000477344.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.225C>G
  hgvsp: ENSP00000476324.1:p.Ser75Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.69C>G
  hgvsp: ENSP00000476616.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.69C>G
  hgvsp: ENSP00000358560.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*25C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.69C>G
  hgvsp: ENSP00000477219.1:p.Ser23Arg
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27167
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21387
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser23Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-114682435-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682435
    reference: chr 1
allele count: 1
allele frequency: 8.756874146204771e-6
allele num: 114196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.314C>T
  hgvsp: ENSP00000476396.1:p.Ala105Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.59C>T
  hgvsp: ENSP00000477219.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.59C>T
  hgvsp: ENSP00000476507.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.59C>T
  hgvsp: ENSP00000476616.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.215C>T
  hgvsp: ENSP00000476324.1:p.Ala72Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.314C>T
  hgvsp: ENSP00000376974.1:p.Ala105Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.59C>T
  hgvsp: ENSP00000477344.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.59C>T
  hgvsp: ENSP00000358560.1:p.Ala20Val
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala20Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

1-114682442-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682441
    reference: chr 1
allele count: 18
allele frequency: 1.58716162595891e-4
allele num: 113410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*7delC
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.207delC
  hgvsp: ENSP00000476324.1:p.Leu70TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.51delC
  hgvsp: ENSP00000477219.1:p.Leu18TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.51delC
  hgvsp: ENSP00000358560.1:p.Leu18TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*7delC
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.51delC
  hgvsp: ENSP00000476507.1:p.Leu18TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.306delC
  hgvsp: ENSP00000376974.1:p.Leu103TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.51delC
  hgvsp: ENSP00000477344.1:p.Leu18TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.306delC
  hgvsp: ENSP00000476396.1:p.Leu103TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.51delC
  hgvsp: ENSP00000476616.1:p.Leu18TrpfsTer17
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21055
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu18TrpfsTer17
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: AG
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-114682442-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682443
    reference: chr 1
allele count: 3
allele frequency: 2.645269376598183e-5
allele num: 113410
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.51dupC
  hgvsp: ENSP00000358560.1:p.Glu19GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.51dupC
  hgvsp: ENSP00000476616.1:p.Glu19GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.51dupC
  hgvsp: ENSP00000476507.1:p.Glu19GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*7dupC
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.306dupC
  hgvsp: ENSP00000476396.1:p.Glu104GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.207dupC
  hgvsp: ENSP00000476324.1:p.Glu71GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.51dupC
  hgvsp: ENSP00000477219.1:p.Glu19GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.306dupC
  hgvsp: ENSP00000376974.1:p.Glu104GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*7dupC
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.51dupC
  hgvsp: ENSP00000477344.1:p.Glu19GlyfsTer41
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Glu19GlyfsTer41
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-114682444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682444
    reference: chr 1
allele count: 4
allele frequency: 3.5288928098809e-5
allele num: 113350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.50C>T
  hgvsp: ENSP00000477344.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.50C>T
  hgvsp: ENSP00000358560.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.50C>T
  hgvsp: ENSP00000476507.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.50C>T
  hgvsp: ENSP00000477219.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.206C>T
  hgvsp: ENSP00000476324.1:p.Pro69Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.50C>T
  hgvsp: ENSP00000476616.1:p.Pro17Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.305C>T
  hgvsp: ENSP00000476396.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.305C>T
  hgvsp: ENSP00000376974.1:p.Pro102Leu
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro17Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

1-114682444-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682444
    reference: chr 1
allele count: 3
allele frequency: 2.646669607410675e-5
allele num: 113350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.50C>G
  hgvsp: ENSP00000476507.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.206C>G
  hgvsp: ENSP00000476324.1:p.Pro69Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.50C>G
  hgvsp: ENSP00000477344.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.50C>G
  hgvsp: ENSP00000477219.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.305C>G
  hgvsp: ENSP00000376974.1:p.Pro102Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.50C>G
  hgvsp: ENSP00000476616.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.305C>G
  hgvsp: ENSP00000476396.1:p.Pro102Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*6C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*6C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.50C>G
  hgvsp: ENSP00000358560.1:p.Pro17Arg
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4968
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro17Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

1-114682445-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682445
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682445
    reference: chr 1
allele count: 100
allele frequency: 8.823010411152286e-4
allele num: 113340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.49C>T
  hgvsp: ENSP00000358560.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.49C>T
  hgvsp: ENSP00000477344.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*5C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.49C>T
  hgvsp: ENSP00000476507.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.49C>T
  hgvsp: ENSP00000477219.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.304C>T
  hgvsp: ENSP00000376974.1:p.Pro102Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.49C>T
  hgvsp: ENSP00000476616.1:p.Pro17Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.205C>T
  hgvsp: ENSP00000476324.1:p.Pro69Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.304C>T
  hgvsp: ENSP00000476396.1:p.Pro102Ser
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21011
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26999
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro17Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

1-114682446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682446
    reference: chr 1
allele count: 99
allele frequency: 8.744347088750706e-4
allele num: 113216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.48C>T
  hgvsp: ENST00000608203.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*4C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.48C>T
  hgvsp: ENST00000607941.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.48C>T
  hgvsp: ENST00000369547.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.303C>T
  hgvsp: ENST00000393296.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.48C>T
  hgvsp: ENST00000609577.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.204C>T
  hgvsp: ENST00000608879.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.303C>T
  hgvsp: ENST00000610222.1:c.303C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.48C>T
  hgvsp: ENST00000609117.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26947
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20988
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro16Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-114682448-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682448
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682448
    reference: chr 1
allele count: 14
allele frequency: 1.237842617152962e-4
allele num: 113100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.301C>G
  hgvsp: ENSP00000476396.1:p.Pro101Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.46C>G
  hgvsp: ENSP00000476616.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.46C>G
  hgvsp: ENSP00000358560.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.202C>G
  hgvsp: ENSP00000476324.1:p.Pro68Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.46C>G
  hgvsp: ENSP00000477219.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.301C>G
  hgvsp: ENSP00000376974.1:p.Pro101Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.46C>G
  hgvsp: ENSP00000476507.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.46C>G
  hgvsp: ENSP00000477344.1:p.Pro16Ala
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.75e1
  variant carriers: 14
hgvs: p.Pro16Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-114682450-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682450
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682450
    reference: chr 1
allele count: 1
allele frequency: 8.851907586084802e-6
allele num: 112970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.216A>T
  hgvsp: ENSP00000476562.1:p.Ter72TyrextTer44
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.216A>T
  hgvsp: ENSP00000477325.1:p.Ter72TyrextTer44
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.44A>T
  hgvsp: ENSP00000358560.1:p.Asn15Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.200A>T
  hgvsp: ENSP00000476324.1:p.Asn67Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.44A>T
  hgvsp: ENSP00000477219.1:p.Asn15Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.299A>T
  hgvsp: ENSP00000376974.1:p.Asn100Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.44A>T
  hgvsp: ENSP00000477344.1:p.Asn15Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.44A>T
  hgvsp: ENSP00000476507.1:p.Asn15Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.44A>T
  hgvsp: ENSP00000476616.1:p.Asn15Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.299A>T
  hgvsp: ENSP00000476396.1:p.Asn100Ile
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter72TyrextTer44
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-114682470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682470
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682470
    reference: chr 1
allele count: 1
allele frequency: 8.986502273585076e-6
allele num: 111278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.24C>T
  hgvsp: ENST00000609117.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.196C>T
  hgvsp: ENSP00000476562.1:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.279C>T
  hgvsp: ENST00000610222.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.24C>T
  hgvsp: ENST00000608203.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.24C>T
  hgvsp: ENST00000609577.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.196C>T
  hgvsp: ENSP00000477325.1:p.Leu66Phe
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.180C>T
  hgvsp: ENST00000608879.1:c.180C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.24C>T
  hgvsp: ENST00000607941.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.24C>T
  hgvsp: ENST00000369547.1:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.279C>T
  hgvsp: ENST00000393296.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu66Phe
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-114682471-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682471
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682471
    reference: chr 1
allele count: 1
allele frequency: 9.000900090009001e-6
allele num: 111100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.278C>T
  hgvsp: ENSP00000376974.1:p.Ala93Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.23C>T
  hgvsp: ENSP00000477344.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.195C>T
  hgvsp: ENST00000610096.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.195C>T
  hgvsp: ENST00000610121.1:c.195C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.23C>T
  hgvsp: ENSP00000476616.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.278C>T
  hgvsp: ENSP00000476396.1:p.Ala93Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.179C>T
  hgvsp: ENSP00000476324.1:p.Ala60Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.23C>T
  hgvsp: ENSP00000476507.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.23C>T
  hgvsp: ENSP00000477219.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.23C>T
  hgvsp: ENSP00000358560.1:p.Ala8Val
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5223
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala8Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-114682477-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682477
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682477
    reference: chr 1
allele count: 1
allele frequency: 9.04895484571532e-6
allele num: 110510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.189A>G
  hgvsp: ENST00000610096.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.272A>G
  hgvsp: ENSP00000476396.1:p.Lys91Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.17A>G
  hgvsp: ENSP00000358560.1:p.Lys6Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.17A>G
  hgvsp: ENSP00000477219.1:p.Lys6Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.272A>G
  hgvsp: ENSP00000376974.1:p.Lys91Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.173A>G
  hgvsp: ENSP00000476324.1:p.Lys58Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.17A>G
  hgvsp: ENSP00000476616.1:p.Lys6Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.189A>G
  hgvsp: ENST00000610121.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.17A>G
  hgvsp: ENSP00000476507.1:p.Lys6Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.17A>G
  hgvsp: ENSP00000477344.1:p.Lys6Arg
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys6Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-114682479-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682479
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682479
    reference: chr 1
allele count: 2
allele frequency: 1.813598360507082e-5
allele num: 110278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.187C>A
  hgvsp: ENSP00000476562.1:p.Gln63Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.15C>A
  hgvsp: ENSP00000476616.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.171C>A
  hgvsp: ENSP00000476324.1:p.Asn57Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.15C>A
  hgvsp: ENSP00000477219.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.270C>A
  hgvsp: ENSP00000376974.1:p.Asn90Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.270C>A
  hgvsp: ENSP00000476396.1:p.Asn90Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.15C>A
  hgvsp: ENSP00000477344.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.15C>A
  hgvsp: ENSP00000476507.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.187C>A
  hgvsp: ENSP00000477325.1:p.Gln63Lys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.15C>A
  hgvsp: ENSP00000358560.1:p.Asn5Lys
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 44295
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn5Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

1-114682480-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682480
    reference: chr 1
allele count: 1
allele frequency: 9.066840750009067e-6
allele num: 110292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.170A>T
  hgvsp: ENSP00000476324.1:p.Asn57Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.14A>T
  hgvsp: ENSP00000477219.1:p.Asn5Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.269A>T
  hgvsp: ENSP00000476396.1:p.Asn90Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.186A>T
  hgvsp: ENSP00000477325.1:p.Glu62Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.14A>T
  hgvsp: ENSP00000476616.1:p.Asn5Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.14A>T
  hgvsp: ENSP00000476507.1:p.Asn5Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.269A>T
  hgvsp: ENSP00000376974.1:p.Asn90Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.14A>T
  hgvsp: ENSP00000477344.1:p.Asn5Ile
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.186A>T
  hgvsp: ENSP00000476562.1:p.Glu62Asp
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.14A>T
  hgvsp: ENSP00000358560.1:p.Asn5Ile
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5763
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn5Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-114682480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682480
    reference: chr 1
allele count: 1
allele frequency: 9.066840750009067e-6
allele num: 110292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.14A>G
  hgvsp: ENSP00000476507.1:p.Asn5Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.14A>G
  hgvsp: ENSP00000358560.1:p.Asn5Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.14A>G
  hgvsp: ENSP00000477219.1:p.Asn5Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.269A>G
  hgvsp: ENSP00000376974.1:p.Asn90Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.186A>G
  hgvsp: ENST00000610096.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.269A>G
  hgvsp: ENSP00000476396.1:p.Asn90Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.186A>G
  hgvsp: ENST00000610121.1:c.186A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.14A>G
  hgvsp: ENSP00000477344.1:p.Asn5Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.14A>G
  hgvsp: ENSP00000476616.1:p.Asn5Ser
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.170A>G
  hgvsp: ENSP00000476324.1:p.Asn57Ser
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn5Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-114682485-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682485
    reference: chr 1
allele count: 1
allele frequency: 9.132753707898006e-6
allele num: 109496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.264G>C
  hgvsp: ENSP00000376974.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.181G>C
  hgvsp: ENSP00000477325.1:p.Glu61Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.9G>C
  hgvsp: ENSP00000477344.1:p.Trp3Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.9G>C
  hgvsp: ENSP00000477219.1:p.Trp3Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.264G>C
  hgvsp: ENSP00000476396.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.165G>C
  hgvsp: ENSP00000476324.1:p.Trp55Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.181G>C
  hgvsp: ENSP00000476562.1:p.Glu61Gln
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.9G>C
  hgvsp: ENSP00000476616.1:p.Trp3Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.9G>C
  hgvsp: ENSP00000476507.1:p.Trp3Cys
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.9G>C
  hgvsp: ENSP00000358560.1:p.Trp3Cys
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1840
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp3Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

1-114682490-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682490
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682490
    reference: chr 1
allele count: 2
allele frequency: 1.830596591429147e-5
allele num: 109254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.160C>G
  hgvsp: ENSP00000476324.1:p.Pro54Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.4C>G
  hgvsp: ENSP00000476616.1:p.Pro2Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.259C>G
  hgvsp: ENSP00000376974.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.4C>G
  hgvsp: ENSP00000476507.1:p.Pro2Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.259C>G
  hgvsp: ENSP00000476396.1:p.Pro87Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.176C>G
  hgvsp: ENSP00000476562.1:p.Ala59Gly
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.4C>G
  hgvsp: ENSP00000477219.1:p.Pro2Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.4C>G
  hgvsp: ENSP00000477344.1:p.Pro2Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.4C>G
  hgvsp: ENSP00000358560.1:p.Pro2Ala
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.176C>G
  hgvsp: ENSP00000477325.1:p.Ala59Gly
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro2Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-114682496-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682496
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682496
    reference: chr 1
allele count: 1
allele frequency: 9.207933555551464e-6
allele num: 108602
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-3T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-3T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-3T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.154T>C
  hgvsp: ENSP00000476324.1:p.Trp52Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.170T>C
  hgvsp: ENSP00000476562.1:p.Leu57Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-3T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.170T>C
  hgvsp: ENSP00000477325.1:p.Leu57Pro
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.253T>C
  hgvsp: ENSP00000476396.1:p.Trp85Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.253T>C
  hgvsp: ENSP00000376974.1:p.Trp85Arg
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-3T>C
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu57Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

1-114682502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682502
    reference: chr 1
allele count: 2
allele frequency: 1.857493127275429e-5
allele num: 107672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.247C>T
  hgvsp: ENST00000393296.1:c.247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.247C>T
  hgvsp: ENST00000610222.1:c.247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164C>T
  hgvsp: ENSP00000477325.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.148C>T
  hgvsp: ENST00000608879.1:c.148C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164C>T
  hgvsp: ENSP00000476562.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26341
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala55Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-114682524-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682524
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682524
    reference: chr 1
allele count: 1
allele frequency: 9.449652252797097e-6
allele num: 105824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-22T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-22T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-22T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.225T>C
  hgvsp: ENST00000610222.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.126T>C
  hgvsp: ENST00000608879.1:c.126T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-22T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.225T>C
  hgvsp: ENST00000393296.1:c.225T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-22T>C
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-22T>C
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val75Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-114682537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682537
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682537
    reference: chr 1
allele count: 1
allele frequency: 9.590302286328066e-6
allele num: 104272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-35C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-35C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.113C>T
  hgvsp: ENSP00000476324.1:p.Ala38Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.212C>T
  hgvsp: ENSP00000376974.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-35C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-44C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.212C>T
  hgvsp: ENSP00000476396.1:p.Ala71Val
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-35C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-35C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-35C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala71Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-114682538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682538
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682538
    reference: chr 1
allele count: 1
allele frequency: 9.605040725372675e-6
allele num: 104112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-36G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.112G>A
  hgvsp: ENSP00000476324.1:p.Ala38Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-36G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-36G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.211G>A
  hgvsp: ENSP00000376974.1:p.Ala71Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-36G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-45G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-36G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.211G>A
  hgvsp: ENSP00000476396.1:p.Ala71Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-36G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala71Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

1-114682541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682541
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682541
    reference: chr 1
allele count: 7
allele frequency: 6.740880551596626e-5
allele num: 103844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-39G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-39G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-39G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.208G>A
  hgvsp: ENSP00000376974.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.109G>A
  hgvsp: ENSP00000476324.1:p.Val37Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-39G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-48G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.208G>A
  hgvsp: ENSP00000476396.1:p.Val70Met
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-39G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-39G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val70Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP

1-114682542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682542
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682542
    reference: chr 1
allele count: 1
allele frequency: 9.642457669610831e-6
allele num: 103708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-40C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-40C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-40C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-49C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.207C>T
  hgvsp: ENST00000610222.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.108C>T
  hgvsp: ENST00000608879.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.207C>T
  hgvsp: ENST00000393296.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-40C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-40C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-40C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly69Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

1-114682565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682565
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682565
    reference: chr 1
allele count: 4
allele frequency: 4.03298985703051e-5
allele num: 99182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.184G>A
  hgvsp: ENSP00000376974.1:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-63G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-63G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.85G>A
  hgvsp: ENSP00000476324.1:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.184G>A
  hgvsp: ENSP00000476396.1:p.Ala62Thr
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-63G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-63G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-63G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-72G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-63G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala62Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

1-114682566-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682566
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682566
    reference: chr 1
allele count: 1
allele frequency: 1.013253353868601e-5
allele num: 98692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-64C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.84C>T
  hgvsp: ENST00000608879.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-64C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-64C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-64C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.183C>T
  hgvsp: ENST00000610222.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.183C>T
  hgvsp: ENST00000393296.1:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-64C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-64C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu61Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

1-114682589-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682589
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682589
    reference: chr 1
allele count: 1
allele frequency: 1.111975981318804e-5
allele num: 89930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.164-4G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-92-4G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-87G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-87G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-87G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.164-4G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-87G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.65-4G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-87G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-87G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.5e0
  variant carriers: 0
hgvs: c.164-4G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

1-114682591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682591
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682591
    reference: chr 1
allele count: 1
allele frequency: 1.119219232663294e-5
allele num: 89348
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-92-6G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.164-6G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.65-6G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-89G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-89G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-89G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-89G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-89G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.164-6G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-89G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2443
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
hgvs: c.164-6G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-114682593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682593
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682593
    reference: chr 1
allele count: 5
allele frequency: 5.652016639536987e-5
allele num: 88464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.164-8G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-92-8G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.65-8G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-91G>A
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.164-8G>A
  variant of: http://identifiers.org/hgnc/18638
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7037
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
hgvs: c.164-8G>A
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-114682594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114682594
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 114682594
    reference: chr 1
allele count: 2
allele frequency: 2.26747086299941e-5
allele num: 88204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000376974
  ensembl transcript: ENST00000393296
  gene symbol: SYT6
  hgvsc: ENST00000393296.1:c.164-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476324
  ensembl transcript: ENST00000608879
  gene symbol: SYT6
  hgvsc: ENST00000608879.1:c.65-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476562
  ensembl transcript: ENST00000610121
  gene symbol: SYT6
  hgvsc: ENST00000610121.1:c.164-92C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476616
  ensembl transcript: ENST00000608203
  gene symbol: SYT6
  hgvsc: ENST00000608203.1:c.-9-92C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000358560
  ensembl transcript: ENST00000369547
  gene symbol: SYT6
  hgvsc: ENST00000369547.1:c.-9-92C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477344
  ensembl transcript: ENST00000609117
  gene symbol: SYT6
  hgvsc: ENST00000609117.1:c.-9-92C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477219
  ensembl transcript: ENST00000609577
  gene symbol: SYT6
  hgvsc: ENST00000609577.1:c.-92-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476396
  ensembl transcript: ENST00000610222
  gene symbol: SYT6
  hgvsc: ENST00000610222.1:c.164-9C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000476507
  ensembl transcript: ENST00000607941
  gene symbol: SYT6
  hgvsc: ENST00000607941.1:c.-9-92C>T
  variant of: http://identifiers.org/hgnc/18638
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000134207
  ensembl protein: ENSP00000477325
  ensembl transcript: ENST00000610096
  gene symbol: SYT6
  hgvsc: ENST00000610096.1:c.164-92C>T
  variant of: http://identifiers.org/hgnc/18638
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19236
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48234
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6544
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50879628232596e-5
allele num: 66278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 8.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.028e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.804e0

DP
type: SiteQuality
SIO_000300: 1.489981e6

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6602
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 252
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48583
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 48
allele frequency: 4.638577502899111e-3
allele num: 10348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.988120195667365e-4
allele num: 11448
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.497196e6

QD
type: SiteQuality
SIO_000300: 1.38e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 1.137e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48722
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

FS
type: SiteQuality
SIO_000300: 3.969e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.577e1

DP
type: SiteQuality
SIO_000300: 1.499608e6

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49032
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505072092953252e-5
allele num: 66442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

VQSLOD
type: SiteQuality
SIO_000300: -1.564e0

DP
type: SiteQuality
SIO_000300: 1.501879e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.567e1

FS
type: SiteQuality
SIO_000300: 1.467e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.507075e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

GenotypeQuality
all individuals: 326
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.641342074816814e-5
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737015806843842e-4
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.516042e6

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 5.12e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6696
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.014693951140358e-5
allele num: 66558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 1.517541e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.52e-1

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6706
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501681883709755e-5
allele num: 66592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 8.840999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.434e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.517463e6

QD
type: SiteQuality
SIO_000300: 1.458e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.520458e6

FS
type: SiteQuality
SIO_000300: 3.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.438e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 1299
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.75e1
variant carriers: 457

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 91
allele frequency: 1.365628188966925e-3
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.090614886731392e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 2.513869625520111e-3
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.543237250554324e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 334
allele frequency: 2.024242424242424e-2
allele num: 16500
num of homozygotes: 9

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.49e-2

QD
type: SiteQuality
SIO_000300: 1.316e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

DP
type: SiteQuality
SIO_000300: 1.536891e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 969
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
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ClippingRankSum
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MQRankSum
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QD
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DP
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SIO_000300: 1.522317e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.08e-1

BaseQRankSum
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SIO_000300: -3.46e-1

VQSLOD
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FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 9
allele frequency: 1.349932503374831e-4
allele num: 66670
num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: 1.7e0

MQRankSum
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SIO_000300: -1.22e-1

ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.85e-1

ClippingRankSum
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SIO_000300: -6.56e-1

VQSLOD
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SIO_000300: 2.25e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
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InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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SIO_000300: 1.23e0

ClippingRankSum
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DP
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MQ
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FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.106e1

MQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 3.42e-1

BaseQRankSum
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SIO_000300: -2.728e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.0e-4

ReadPosRankSum
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SIO_000300: -2.2e-2

QD
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ClippingRankSum
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SIO_000300: 6.09e-1

VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 4.017e0

MQRankSum
type: SiteQuality
SIO_000300: 7.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.523657e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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FS
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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QD
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele num: 8654
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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European (Finnish)
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East Asian
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -5.23e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
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SIO_000300: 6.35e-1

DP
type: SiteQuality
SIO_000300: 1.524976e6

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.185e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
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MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
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SIO_000300: 7.92e-1

VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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QD
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MQRankSum
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DP
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BaseQRankSum
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SIO_000300: -5.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.21e-1

MQRankSum
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SIO_000300: -2.03e-1

ReadPosRankSum
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SIO_000300: 5.639999999999999e-1

ClippingRankSum
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QD
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DP
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SIO_000300: 1.525197e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.651e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.818e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.31e-1

DP
type: SiteQuality
SIO_000300: 1.524724e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 143
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 6
allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
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allele frequency: 0.0e0
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ClippingRankSum
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SIO_000300: -1.307e0

DP
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SIO_000300: 1.525047e6

FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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MQRankSum
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SIO_000300: -1.94e-1

ReadPosRankSum
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MQ
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SIO_000300: 5.965e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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VQSLOD
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

East Asian
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South Asian
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African
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allele frequency: 9.626492106276473e-5
allele num: 10388
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.281000000000001e0

DP
type: SiteQuality
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.501817198810561e-5
allele num: 66586
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 1.518464e6

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.75e1
variant carriers: 85

GenotypeQuality
all individuals: 50269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.25e1
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GenotypeQuality
all individuals: 1296
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variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.007629689705926e-5
allele num: 66582
num of homozygotes: 0

South Asian
type: Population
allele count: 80
allele frequency: 4.901360127435363e-3
allele num: 16322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

QD
type: SiteQuality
SIO_000300: 1.381e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 1.522221e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 1.234e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

DP
type: SiteQuality
SIO_000300: 1.517216e6

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 934
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 68
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005259203606311e-5
allele num: 66550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 1.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 1.517216e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 931
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
all individuals: 484
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 1288
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variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 131
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variant carriers: 2

GenotypeQuality
all individuals: 6722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50271992306074e-5
allele num: 66546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

DP
type: SiteQuality
SIO_000300: 1.516701e6

QD
type: SiteQuality
SIO_000300: 7.41e0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 130
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variant carriers: 1

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 748
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 49711
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 915
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GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.247657128576784e-5
allele num: 16006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.251e0

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.702e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e0

FS
type: SiteQuality
SIO_000300: 2.175e0

DP
type: SiteQuality
SIO_000300: 1.510716e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.962e0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 49379
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1252
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.58e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

DP
type: SiteQuality
SIO_000300: 1.503664e6

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.914e0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 1227
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variant carriers: 0

GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 6534
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GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49234
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.944e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.500504e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.819e0

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.57e-1

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 892
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variant carriers: 0

GenotypeQuality
all individuals: 6460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.149e1

FS
type: SiteQuality
SIO_000300: 6.593e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.490723e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.436e0

VQSLOD
type: SiteQuality
SIO_000300: -5.151e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.914672935970129e-5
allele num: 14462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.37e-2

QD
type: SiteQuality
SIO_000300: 1.422e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.55e-1

DP
type: SiteQuality
SIO_000300: 1.469518e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521977352976988e-5
allele num: 65704
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

QD
type: SiteQuality
SIO_000300: 1.163e1

FS
type: SiteQuality
SIO_000300: 4.877e0

DP
type: SiteQuality
SIO_000300: 1.468149e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533177971298908e-5
allele num: 65224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 1.213e0

QD
type: SiteQuality
SIO_000300: 1.397e1

DP
type: SiteQuality
SIO_000300: 1.441595e6

MQRankSum
type: SiteQuality
SIO_000300: -2.546e0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 35

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 825
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variant carriers: 0

African
type: Population
allele count: 33
allele frequency: 3.325942350332594e-3
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.081664098613251e-5
allele num: 64900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

QD
type: SiteQuality
SIO_000300: 1.692e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.433814e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 35

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.329297820823245e-3
allele num: 9912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.081379225341262e-5
allele num: 64906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

QD
type: SiteQuality
SIO_000300: 1.681e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548658861426005e-5
allele num: 64572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.518e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 5.794e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 1.418177e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 18
allele frequency: 1.851090086384204e-3
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.018e1

QD
type: SiteQuality
SIO_000300: 1.135e1

VQSLOD
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SIO_000300: 5.95e0

InbreedingCoeff
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

ReadPosRankSum
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SIO_000300: -2.92e-1

DP
type: SiteQuality
SIO_000300: 1.414101e6

ClippingRankSum
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SIO_000300: -8.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11902
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

VQSLOD
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SIO_000300: 5.95e0

ClippingRankSum
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FS
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MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.135e1

DP
type: SiteQuality
SIO_000300: 1.414101e6

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.92e-1

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.523977788995457e-4
allele num: 11886
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 3.61e-1

BaseQRankSum
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SIO_000300: -1.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
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SIO_000300: 9.98e0

DP
type: SiteQuality
SIO_000300: 1.414327e6

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.682651859330305e-4
allele num: 11886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168770453482936e-4
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.98e0

ReadPosRankSum
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SIO_000300: 3.61e-1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
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SIO_000300: -1.305e0

DP
type: SiteQuality
SIO_000300: 1.414327e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 248
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GenotypeQuality
all individuals: 5856
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variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.150391429748661e-4
allele num: 9708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.541326067211626e-4
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.586892103887049e-4
allele num: 11474
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.685487948761166e-4
allele num: 11866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.196172248803828e-3
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 78
allele frequency: 1.213214707895228e-3
allele num: 64292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

ClippingRankSum
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SIO_000300: -1.03e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

DP
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SIO_000300: 1.423248e6

FS
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
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SIO_000300: -2.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 77
allele frequency: 1.198257080610022e-3
allele num: 64260
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.153576582148011e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.541326067211626e-4
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.696352841391009e-4
allele num: 11790
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.196172248803828e-3
allele num: 836
num of homozygotes: 0

Latino
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allele count: 11
allele frequency: 9.590235396687009e-4
allele num: 11470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.519e1

VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.967e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
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SIO_000300: 1.4e-2

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.180549498473615e-4
allele num: 64204
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQRankSum
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SIO_000300: 1.01e0

InbreedingCoeff
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MQ
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SIO_000300: 5.961e1

FS
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QD
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VQSLOD
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SIO_000300: 8.65e-1

ReadPosRankSum
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SIO_000300: 5.03e-1

ClippingRankSum
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DP
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SIO_000300: 1.409929e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558846453624318e-5
allele num: 64150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
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MQRankSum
type: SiteQuality
SIO_000300: -1.0e-3

InbreedingCoeff
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44475
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63516
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 5.95e-1

DP
type: SiteQuality
SIO_000300: 1.390968e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.21e-1

QD
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SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.184e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.446e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.294e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63434
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 9.209799226376865e-5
allele num: 10858
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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SIO_000300: -9.28e-1

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.05e0

QD
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ClippingRankSum
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SIO_000300: -1.066e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63156
num of homozygotes: 0

East Asian
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allele num: 8474
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DP
type: SiteQuality
SIO_000300: 1.385093e6

MQRankSum
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ClippingRankSum
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FS
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
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SIO_000300: 2.67e0

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58624409124076e-5
allele num: 63042
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.42151874882231e-5
allele num: 10614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
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VQSLOD
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SIO_000300: -4.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
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SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.383191e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.798e0

FS
type: SiteQuality
SIO_000300: 2.5272e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9330
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.586143450813691e-5
allele num: 63046
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.3829e6

ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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QD
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ReadPosRankSum
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SIO_000300: 4.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele num: 9330
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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VQSLOD
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InbreedingCoeff
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FS
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QD
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MQRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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European (Non-Finnish)
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Other
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allele num: 800
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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ReadPosRankSum
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DP
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FS
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
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allele num: 62598
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Other
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QD
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.100836635843241e-4
allele num: 9084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.368317e6

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

FS
type: SiteQuality
SIO_000300: 5.786e0

QD
type: SiteQuality
SIO_000300: 1.497e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615508885298869e-5
allele num: 61900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e0

FS
type: SiteQuality
SIO_000300: 1.1543e1

VQSLOD
type: SiteQuality
SIO_000300: -1.157e0

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.638968105680664e-5
allele num: 61014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 4.656e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

DP
type: SiteQuality
SIO_000300: 1.337938e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

QD
type: SiteQuality
SIO_000300: 1.286e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.662952738883161e-5
allele num: 60134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.185e1

MQRankSum
type: SiteQuality
SIO_000300: 4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 1.317526e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.351e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.473e0

FS
type: SiteQuality
SIO_000300: 6.056e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6655008160954e-5
allele num: 60042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.182e0

DP
type: SiteQuality
SIO_000300: 1.314692e6

FS
type: SiteQuality
SIO_000300: 2.462e0

QD
type: SiteQuality
SIO_000300: 1.018e1

VQSLOD
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SIO_000300: 1.31e0

BaseQRankSum
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SIO_000300: -2.224e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.781578478531979e-4
allele num: 11226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
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European (Non-Finnish)
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allele count: 5
allele frequency: 8.353102342209897e-5
allele num: 59858
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 8.65e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.672688344707614e-5
allele num: 59784
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6524
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQ
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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South Asian
type: Population
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Other
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 5.255597211029747e-5
allele num: 57082
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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FS
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -8.9e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4859
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 519
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.223832e6

FS
type: SiteQuality
SIO_000300: 3.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.205e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

GenotypeQuality
all individuals: 15325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4838
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.481042654028436e-4
allele num: 6752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51956
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.216e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.963e0

DP
type: SiteQuality
SIO_000300: 1.002226e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.401e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 487
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4910
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.940014744112055e-5
allele num: 51546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8032
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

QD
type: SiteQuality
SIO_000300: 2.12e0

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.81724e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
all individuals: 3486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 471
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4916
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 18739
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 792
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.914966918529539e-5
allele num: 51086
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.767897513187641e-4
allele num: 7962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

FS
type: SiteQuality
SIO_000300: 3.207e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.56189e5

QD
type: SiteQuality
SIO_000300: 1.155e1

GenotypeQuality
all individuals: 3202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 1.25e1
variant carriers: 0