1-41483530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483530
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483530
    reference: chr 1
allele count: 1
allele frequency: 8.532423208191126e-6
allele num: 117200
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.734G>A
  hgvsp: ENSP00000352299.1:p.Arg245His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.557G>A
  hgvsp: ENSP00000361694.1:p.Arg186His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.734G>A
  hgvsp: ENSP00000380381.2:p.Arg245His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.734G>A
  hgvsp: ENSP00000361696.2:p.Arg245His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.734G>A
  hgvsp: ENSP00000398938.2:p.Arg245His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.734G>A
  hgvsp: ENSP00000304401.8:p.Arg245His
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43889
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg245His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

1-41483531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483531
    reference: chr 1
allele count: 5
allele frequency: 4.258653584082857e-5
allele num: 117408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.733C>T
  hgvsp: ENSP00000398938.2:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.733C>T
  hgvsp: ENSP00000380381.2:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.733C>T
  hgvsp: ENSP00000352299.1:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.733C>T
  hgvsp: ENSP00000361696.2:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.556C>T
  hgvsp: ENSP00000361694.1:p.Arg186Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.733C>T
  hgvsp: ENSP00000304401.8:p.Arg245Cys
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
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genotype quality: GenotypeQuality
  all individuals: 44139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Arg245Cys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-41483533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483533
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483533
    reference: chr 1
allele count: 10
allele frequency: 8.505715841045183e-5
allele num: 117568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.731G>A
  hgvsp: ENSP00000380381.2:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.731G>A
  hgvsp: ENSP00000304401.8:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.731G>A
  hgvsp: ENSP00000361696.2:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.731G>A
  hgvsp: ENSP00000352299.1:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.731G>A
  hgvsp: ENSP00000398938.2:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.554G>A
  hgvsp: ENSP00000361694.1:p.Arg185Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1088
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 602
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genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
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genotype quality: GenotypeQuality
  all individuals: 484
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7285
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg244Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-41483534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483534
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483534
    reference: chr 1
allele count: 2
allele frequency: 1.699495249910777e-5
allele num: 117682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.730C>T
  hgvsp: ENSP00000304401.8:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.730C>T
  hgvsp: ENSP00000352299.1:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.730C>T
  hgvsp: ENSP00000398938.2:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.730C>T
  hgvsp: ENSP00000380381.2:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.553C>T
  hgvsp: ENSP00000361694.1:p.Arg185Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.730C>T
  hgvsp: ENSP00000361696.2:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg244Trp
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-41483537-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483537
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483537
    reference: chr 1
allele count: 32
allele frequency: 2.712416084627382e-4
allele num: 117976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.727G>A
  hgvsp: ENSP00000304401.8:p.Val243Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.727G>A
  hgvsp: ENSP00000352299.1:p.Val243Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.727G>A
  hgvsp: ENSP00000361696.2:p.Val243Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.550G>A
  hgvsp: ENSP00000361694.1:p.Val184Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.727G>A
  hgvsp: ENSP00000380381.2:p.Val243Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.727G>A
  hgvsp: ENSP00000398938.2:p.Val243Met
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45033
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val243Met
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-41483538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483538
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483538
    reference: chr 1
allele count: 1
allele frequency: 8.466396870819716e-6
allele num: 118114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.726C>T
  hgvsp: ENST00000397197.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.549C>T
  hgvsp: ENST00000372611.1:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.726C>T
  hgvsp: ENST00000302946.8:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.726C>T
  hgvsp: ENST00000439569.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.726C>T
  hgvsp: ENST00000359345.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.726C>T
  hgvsp: ENST00000372613.2:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His242His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

1-41483541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483541
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483541
    reference: chr 1
allele count: 1
allele frequency: 8.452370890034655e-6
allele num: 118310
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.723C>T
  hgvsp: ENST00000359345.1:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.723C>T
  hgvsp: ENST00000397197.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.546C>T
  hgvsp: ENST00000372611.1:c.546C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.723C>T
  hgvsp: ENST00000372613.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.723C>T
  hgvsp: ENST00000302946.8:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.723C>T
  hgvsp: ENST00000439569.2:c.723C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His241His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

1-41483542-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483542
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483542
    reference: chr 1
allele count: 1
allele frequency: 8.447230153232754e-6
allele num: 118382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.722A>G
  hgvsp: ENSP00000352299.1:p.His241Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.722A>G
  hgvsp: ENSP00000304401.8:p.His241Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.545A>G
  hgvsp: ENSP00000361694.1:p.His182Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.722A>G
  hgvsp: ENSP00000398938.2:p.His241Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.722A>G
  hgvsp: ENSP00000380381.2:p.His241Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.722A>G
  hgvsp: ENSP00000361696.2:p.His241Arg
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His241Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

1-41483545-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483545
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483545
    reference: chr 1
allele count: 1
allele frequency: 8.434121080242228e-6
allele num: 118566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.719A>C
  hgvsp: ENSP00000380381.2:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.719A>C
  hgvsp: ENSP00000361696.2:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.719A>C
  hgvsp: ENSP00000398938.2:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.542A>C
  hgvsp: ENSP00000361694.1:p.Lys181Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.719A>C
  hgvsp: ENSP00000304401.8:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.719A>C
  hgvsp: ENSP00000352299.1:p.Lys240Thr
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys240Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-41483546-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483546
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483546
    reference: chr 1
allele count: 2
allele frequency: 1.68602788690125e-5
allele num: 118622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.718A>C
  hgvsp: ENSP00000380381.2:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.718A>C
  hgvsp: ENSP00000361696.2:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.718A>C
  hgvsp: ENSP00000398938.2:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.718A>C
  hgvsp: ENSP00000304401.8:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.541A>C
  hgvsp: ENSP00000361694.1:p.Lys181Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.718A>C
  hgvsp: ENSP00000352299.1:p.Lys240Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys240Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

1-41483552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483552
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483552
    reference: chr 1
allele count: 4
allele frequency: 3.367910548295837e-5
allele num: 118768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.535G>A
  hgvsp: ENSP00000361694.1:p.Ala179Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.712G>A
  hgvsp: ENSP00000380381.2:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.712G>A
  hgvsp: ENSP00000398938.2:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.712G>A
  hgvsp: ENSP00000361696.2:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.712G>A
  hgvsp: ENSP00000304401.8:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.712G>A
  hgvsp: ENSP00000352299.1:p.Ala238Thr
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala238Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

1-41483554-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483554
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483554
    reference: chr 1
allele count: 2
allele frequency: 1.683076664142052e-5
allele num: 118830
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.710T>A
  hgvsp: ENSP00000352299.1:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.533T>A
  hgvsp: ENSP00000361694.1:p.Leu178Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.710T>A
  hgvsp: ENSP00000304401.8:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.710T>A
  hgvsp: ENSP00000398938.2:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.710T>A
  hgvsp: ENSP00000361696.2:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.710T>A
  hgvsp: ENSP00000380381.2:p.Leu237Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9553
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7432
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu237Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-41483567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483567
    reference: chr 1
allele count: 13
allele frequency: 1.094847479324226e-4
allele num: 118738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.697G>A
  hgvsp: ENSP00000361696.2:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.697G>A
  hgvsp: ENSP00000398938.2:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.697G>A
  hgvsp: ENSP00000352299.1:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.697G>A
  hgvsp: ENSP00000304401.8:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.697G>A
  hgvsp: ENSP00000380381.2:p.Glu233Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.520G>A
  hgvsp: ENSP00000361694.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46012
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7364
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu233Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

1-41483568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483568
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483568
    reference: chr 1
allele count: 3
allele frequency: 2.525890376357666e-5
allele num: 118770
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.696C>T
  hgvsp: ENST00000359345.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.696C>T
  hgvsp: ENST00000372613.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.696C>T
  hgvsp: ENST00000397197.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.696C>T
  hgvsp: ENST00000302946.8:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.696C>T
  hgvsp: ENST00000439569.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.519C>T
  hgvsp: ENST00000372611.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly232Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-41483568-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483568
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483568
    reference: chr 1
allele count: 1
allele frequency: 8.419634587858886e-6
allele num: 118770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.696C>G
  hgvsp: ENST00000302946.8:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.696C>G
  hgvsp: ENST00000439569.2:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.696C>G
  hgvsp: ENST00000372613.2:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.696C>G
  hgvsp: ENST00000359345.1:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.519C>G
  hgvsp: ENST00000372611.1:c.519C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.696C>G
  hgvsp: ENST00000397197.2:c.696C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17486
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1738
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7368
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly232Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-41483570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483570
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483570
    reference: chr 1
allele count: 3
allele frequency: 2.532243905733e-5
allele num: 118472
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.694G>A
  hgvsp: ENSP00000380381.2:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.694G>A
  hgvsp: ENSP00000304401.8:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.517G>A
  hgvsp: ENSP00000361694.1:p.Gly173Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.694G>A
  hgvsp: ENSP00000352299.1:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.694G>A
  hgvsp: ENSP00000361696.2:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.694G>A
  hgvsp: ENSP00000398938.2:p.Gly232Ser
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9340
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly232Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-41483578-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483578
    reference: chr 1
allele count: 49
allele frequency: 4.151697959737003e-4
allele num: 118024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.509G>C
  hgvsp: ENSP00000361694.1:p.Arg170Pro
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.686G>C
  hgvsp: ENSP00000398938.2:p.Arg229Pro
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.686G>C
  hgvsp: ENSP00000304401.8:p.Arg229Pro
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.686G>C
  hgvsp: ENSP00000361696.2:p.Arg229Pro
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.686G>C
  hgvsp: ENSP00000352299.1:p.Arg229Pro
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.686G>C
  hgvsp: ENSP00000380381.2:p.Arg229Pro
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg229Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

1-41483578-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483578
    reference: chr 1
allele count: 8
allele frequency: 6.778282383244086e-5
allele num: 118024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.686G>A
  hgvsp: ENSP00000361696.2:p.Arg229Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.686G>A
  hgvsp: ENSP00000304401.8:p.Arg229Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.686G>A
  hgvsp: ENSP00000398938.2:p.Arg229Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.509G>A
  hgvsp: ENSP00000361694.1:p.Arg170Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.686G>A
  hgvsp: ENSP00000352299.1:p.Arg229Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.686G>A
  hgvsp: ENSP00000380381.2:p.Arg229Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17606
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45570
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7022
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg229Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-41483580-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483580
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483580
    reference: chr 1
allele count: 1
allele frequency: 8.477162524159914e-6
allele num: 117964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.684G>C
  hgvsp: ENSP00000304401.8:p.Lys228Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.684G>C
  hgvsp: ENSP00000352299.1:p.Lys228Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.684G>C
  hgvsp: ENSP00000398938.2:p.Lys228Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.684G>C
  hgvsp: ENSP00000380381.2:p.Lys228Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.684G>C
  hgvsp: ENSP00000361696.2:p.Lys228Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.507G>C
  hgvsp: ENSP00000361694.1:p.Lys169Asn
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys228Asn
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-41483581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483581
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483581
    reference: chr 1
allele count: 1
allele frequency: 8.489829184636805e-6
allele num: 117788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.683A>G
  hgvsp: ENSP00000361696.2:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.683A>G
  hgvsp: ENSP00000380381.2:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.683A>G
  hgvsp: ENSP00000304401.8:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.683A>G
  hgvsp: ENSP00000352299.1:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.683A>G
  hgvsp: ENSP00000398938.2:p.Lys228Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.506A>G
  hgvsp: ENSP00000361694.1:p.Lys169Arg
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6969
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys228Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-41483583-G-GATCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483583
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483587
    reference: chr 1
allele count: 1
allele frequency: 8.497909514259493e-6
allele num: 117676
alternate allele: GATCA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.680_681insTGAT
  hgvsp: ENSP00000352299.1:p.Lys228AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.680_681insTGAT
  hgvsp: ENSP00000380381.2:p.Lys228AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.680_681insTGAT
  hgvsp: ENSP00000304401.8:p.Lys228AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.680_681insTGAT
  hgvsp: ENSP00000398938.2:p.Lys228AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.503_504insTGAT
  hgvsp: ENSP00000361694.1:p.Lys169AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.680_681insTGAT
  hgvsp: ENSP00000361696.2:p.Lys228AspfsTer5
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45515
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6919
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys228AspfsTer5
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

1-41483585-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483585
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483585
    reference: chr 1
allele count: 1
allele frequency: 8.527184664711099e-6
allele num: 117272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.502T>C
  hgvsp: ENSP00000361694.1:p.Phe168Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.679T>C
  hgvsp: ENSP00000352299.1:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.679T>C
  hgvsp: ENSP00000304401.8:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.679T>C
  hgvsp: ENSP00000398938.2:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.679T>C
  hgvsp: ENSP00000361696.2:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.679T>C
  hgvsp: ENSP00000380381.2:p.Phe227Leu
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44996
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe227Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-41483586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483586
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483586
    reference: chr 1
allele count: 1
allele frequency: 8.565750702391558e-6
allele num: 116744
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.678G>A
  hgvsp: ENST00000372613.2:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.678G>A
  hgvsp: ENST00000397197.2:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.678G>A
  hgvsp: ENST00000439569.2:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.501G>A
  hgvsp: ENST00000372611.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.678G>A
  hgvsp: ENST00000302946.8:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.678G>A
  hgvsp: ENST00000359345.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28266
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6629
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu226Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-41483596-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483596
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483596
    reference: chr 1
allele count: 2
allele frequency: 1.758520029543137e-5
allele num: 113732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.668G>A
  hgvsp: ENSP00000304401.8:p.Arg223His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.491G>A
  hgvsp: ENSP00000361694.1:p.Arg164His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.668G>A
  hgvsp: ENSP00000361696.2:p.Arg223His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.668G>A
  hgvsp: ENSP00000398938.2:p.Arg223His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.668G>A
  hgvsp: ENSP00000352299.1:p.Arg223His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.668G>A
  hgvsp: ENSP00000380381.2:p.Arg223His
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg223His
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

1-41483597-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483597
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483597
    reference: chr 1
allele count: 3
allele frequency: 2.654585353767741e-5
allele num: 113012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.667C>T
  hgvsp: ENSP00000304401.8:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.667C>T
  hgvsp: ENSP00000352299.1:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.667C>T
  hgvsp: ENSP00000380381.2:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.667C>T
  hgvsp: ENSP00000361696.2:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.667C>T
  hgvsp: ENSP00000398938.2:p.Arg223Cys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.490C>T
  hgvsp: ENSP00000361694.1:p.Arg164Cys
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 755
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
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genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg223Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-41483603-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483603
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483603
    reference: chr 1
allele count: 1
allele frequency: 8.988602452090748e-6
allele num: 111252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.661G>C
  hgvsp: ENSP00000380381.2:p.Glu221Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.661G>C
  hgvsp: ENSP00000352299.1:p.Glu221Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.661G>C
  hgvsp: ENSP00000398938.2:p.Glu221Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.661G>C
  hgvsp: ENSP00000304401.8:p.Glu221Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.484G>C
  hgvsp: ENSP00000361694.1:p.Glu162Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.661G>C
  hgvsp: ENSP00000361696.2:p.Glu221Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu221Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-41483603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483603
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483603
    reference: chr 1
allele count: 1
allele frequency: 8.988602452090748e-6
allele num: 111252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.661G>A
  hgvsp: ENSP00000361696.2:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.661G>A
  hgvsp: ENSP00000304401.8:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.661G>A
  hgvsp: ENSP00000352299.1:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.484G>A
  hgvsp: ENSP00000361694.1:p.Glu162Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.661G>A
  hgvsp: ENSP00000398938.2:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.661G>A
  hgvsp: ENSP00000380381.2:p.Glu221Lys
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
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genotype depth: GenotypeDepth
  all individuals: 3
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genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5415
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu221Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-41483609-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483609
    reference: chr 1
allele count: 1
allele frequency: 9.183748438762765e-6
allele num: 108888
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.655G>A
  hgvsp: ENSP00000352299.1:p.Gly219Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.655G>A
  hgvsp: ENSP00000304401.8:p.Gly219Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.478G>A
  hgvsp: ENSP00000361694.1:p.Gly160Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.655G>A
  hgvsp: ENSP00000398938.2:p.Gly219Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.655G>A
  hgvsp: ENSP00000380381.2:p.Gly219Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.655G>A
  hgvsp: ENSP00000361696.2:p.Gly219Ser
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 5854
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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genotype quality: GenotypeQuality
  all individuals: 319
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genotype quality: GenotypeQuality
  all individuals: 9753
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genotype quality: GenotypeQuality
  all individuals: 312
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genotype quality: GenotypeQuality
  all individuals: 1086
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genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 969
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genotype quality: GenotypeQuality
  all individuals: 562
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genotype quality: GenotypeQuality
  all individuals: 392
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly219Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-41483613-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483613
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483613
    reference: chr 1
allele count: 1
allele frequency: 9.313935510310527e-6
allele num: 107366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.651C>T
  hgvsp: ENST00000397197.2:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.651C>T
  hgvsp: ENST00000372613.2:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.651C>T
  hgvsp: ENST00000359345.1:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.651C>T
  hgvsp: ENST00000302946.8:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.651C>T
  hgvsp: ENST00000439569.2:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.474C>T
  hgvsp: ENST00000372611.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 20
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 35
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10917
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe217Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-41483613-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483613
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483613
    reference: chr 1
allele count: 1
allele frequency: 9.313935510310527e-6
allele num: 107366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.651C>G
  hgvsp: ENSP00000304401.8:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.651C>G
  hgvsp: ENSP00000352299.1:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.651C>G
  hgvsp: ENSP00000398938.2:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.474C>G
  hgvsp: ENSP00000361694.1:p.Phe158Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.651C>G
  hgvsp: ENSP00000361696.2:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.651C>G
  hgvsp: ENSP00000380381.2:p.Phe217Leu
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10917
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 988
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 279
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4437
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe217Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-41483620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483620
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483620
    reference: chr 1
allele count: 1
allele frequency: 9.605594298119224e-6
allele num: 104106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.644G>A
  hgvsp: ENSP00000361696.2:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.644G>A
  hgvsp: ENSP00000398938.2:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.467G>A
  hgvsp: ENSP00000361694.1:p.Gly156Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.644G>A
  hgvsp: ENSP00000304401.8:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.644G>A
  hgvsp: ENSP00000352299.1:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.644G>A
  hgvsp: ENSP00000380381.2:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1849
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly215Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

1-41483628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483628
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483628
    reference: chr 1
allele count: 7
allele frequency: 6.932065755595167e-5
allele num: 100980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.636C>T
  hgvsp: ENST00000302946.8:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.636C>T
  hgvsp: ENST00000439569.2:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.636C>T
  hgvsp: ENST00000359345.1:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.636C>T
  hgvsp: ENST00000372613.2:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.636C>T
  hgvsp: ENST00000397197.2:c.636C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.459C>T
  hgvsp: ENST00000372611.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19394
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15463
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30631
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu212Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-41483634-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483634
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483634
    reference: chr 1
allele count: 5
allele frequency: 5.098399102681758e-5
allele num: 98070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.630C>G
  hgvsp: ENSP00000380381.2:p.Asp210Glu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.453C>G
  hgvsp: ENSP00000361694.1:p.Asp151Glu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.630C>G
  hgvsp: ENSP00000398938.2:p.Asp210Glu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.630C>G
  hgvsp: ENSP00000361696.2:p.Asp210Glu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.630C>G
  hgvsp: ENSP00000352299.1:p.Asp210Glu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.630C>G
  hgvsp: ENSP00000304401.8:p.Asp210Glu
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18315
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17904
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp210Glu
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS

1-41483637-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483637
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483637
    reference: chr 1
allele count: 1
allele frequency: 1.043558115751466e-5
allele num: 95826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.627G>C
  hgvsp: ENSP00000380381.2:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.627G>C
  hgvsp: ENSP00000398938.2:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.627G>C
  hgvsp: ENSP00000352299.1:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.627G>C
  hgvsp: ENSP00000361696.2:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.450G>C
  hgvsp: ENSP00000361694.1:p.Lys150Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.627G>C
  hgvsp: ENSP00000304401.8:p.Lys209Asn
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12813
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25425
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys209Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

1-41483638-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483638
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483638
    reference: chr 1
allele count: 1
allele frequency: 1.049956951764978e-5
allele num: 95242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.626A>C
  hgvsp: ENSP00000398938.2:p.Lys209Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.626A>C
  hgvsp: ENSP00000304401.8:p.Lys209Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.626A>C
  hgvsp: ENSP00000380381.2:p.Lys209Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.449A>C
  hgvsp: ENSP00000361694.1:p.Lys150Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.626A>C
  hgvsp: ENSP00000352299.1:p.Lys209Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.626A>C
  hgvsp: ENSP00000361696.2:p.Lys209Thr
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys209Thr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-41483641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483641
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483641
    reference: chr 1
allele count: 1
allele frequency: 1.067395341886728e-5
allele num: 93686
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.623G>A
  hgvsp: ENSP00000380381.2:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.623G>A
  hgvsp: ENSP00000361696.2:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.623G>A
  hgvsp: ENSP00000398938.2:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.446G>A
  hgvsp: ENSP00000361694.1:p.Gly149Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.623G>A
  hgvsp: ENSP00000352299.1:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.623G>A
  hgvsp: ENSP00000304401.8:p.Gly208Asp
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly208Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

1-41483644-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483644
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483644
    reference: chr 1
allele count: 1
allele frequency: 1.079447322970639e-5
allele num: 92640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.620T>C
  hgvsp: ENSP00000361696.2:p.Val207Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.620T>C
  hgvsp: ENSP00000398938.2:p.Val207Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.620T>C
  hgvsp: ENSP00000352299.1:p.Val207Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.620T>C
  hgvsp: ENSP00000380381.2:p.Val207Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.443T>C
  hgvsp: ENSP00000361694.1:p.Val148Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.620T>C
  hgvsp: ENSP00000304401.8:p.Val207Ala
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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genotype quality: GenotypeQuality
  all individuals: 23289
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genotype quality: GenotypeQuality
  all individuals: 21790
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genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val207Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-41483645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483645
    reference: chr 1
allele count: 4
allele frequency: 4.351894161933982e-5
allele num: 91914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.619G>A
  hgvsp: ENSP00000398938.2:p.Val207Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.619G>A
  hgvsp: ENSP00000352299.1:p.Val207Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.619G>A
  hgvsp: ENSP00000380381.2:p.Val207Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.619G>A
  hgvsp: ENSP00000361696.2:p.Val207Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.619G>A
  hgvsp: ENSP00000304401.8:p.Val207Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.442G>A
  hgvsp: ENSP00000361694.1:p.Val148Met
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16165
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10742
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22736
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Val207Met
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-41483646-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483646
    reference: chr 1
allele count: 2
allele frequency: 2.188279574598451e-5
allele num: 91396
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.618C>T
  hgvsp: ENST00000359345.1:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.618C>T
  hgvsp: ENST00000372613.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.441C>T
  hgvsp: ENST00000372611.1:c.441C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.618C>T
  hgvsp: ENST00000439569.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.618C>T
  hgvsp: ENST00000397197.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.618C>T
  hgvsp: ENST00000302946.8:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile206Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-41483646-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483646
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483646
    reference: chr 1
allele count: 5
allele frequency: 5.470698936496127e-5
allele num: 91396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.441C>G
  hgvsp: ENSP00000361694.1:p.Ile147Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.618C>G
  hgvsp: ENSP00000304401.8:p.Ile206Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.618C>G
  hgvsp: ENSP00000398938.2:p.Ile206Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.618C>G
  hgvsp: ENSP00000380381.2:p.Ile206Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.618C>G
  hgvsp: ENSP00000352299.1:p.Ile206Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.618C>G
  hgvsp: ENSP00000361696.2:p.Ile206Met
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16147
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13766
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile206Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-41483652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483652
    reference: chr 1
allele count: 1
allele frequency: 1.124808782506974e-5
allele num: 88904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.612G>A
  hgvsp: ENST00000439569.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-1G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.612G>A
  hgvsp: ENST00000359345.1:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.612G>A
  hgvsp: ENST00000397197.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.612G>A
  hgvsp: ENST00000372613.2:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.612G>A
  hgvsp: ENST00000302946.8:c.612G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2039
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21818
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
hgvs: c.436-1G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-41483655-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483655
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483655
    reference: chr 1
allele count: 1
allele frequency: 1.145475372279496e-5
allele num: 87300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.609C>A
  hgvsp: ENSP00000380381.2:p.His203Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.609C>A
  hgvsp: ENSP00000304401.8:p.His203Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.609C>A
  hgvsp: ENSP00000398938.2:p.His203Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-4C>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.609C>A
  hgvsp: ENSP00000361696.2:p.His203Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.609C>A
  hgvsp: ENSP00000352299.1:p.His203Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2877
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His203Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-41483669-T-TGTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483669
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483672
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 78980
alternate allele: TGTC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.592_594dupGAC
  hgvsp: ENSP00000352299.1:p.Asp198dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.592_594dupGAC
  hgvsp: ENSP00000304401.8:p.Asp198dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.592_594dupGAC
  hgvsp: ENSP00000380381.2:p.Asp198dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-21_436-19dupGAC
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.592_594dupGAC
  hgvsp: ENSP00000398938.2:p.Asp198dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.592_594dupGAC
  hgvsp: ENSP00000361696.2:p.Asp198dup
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: inframe insertion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3088
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15893
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp198dup
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-41483672-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483672
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483672
    reference: chr 1
allele count: 4
allele frequency: 5.339313364301351e-5
allele num: 74916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.592G>A
  hgvsp: ENSP00000361696.2:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-21G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.592G>A
  hgvsp: ENSP00000352299.1:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.592G>A
  hgvsp: ENSP00000380381.2:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.592G>A
  hgvsp: ENSP00000304401.8:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.592G>A
  hgvsp: ENSP00000398938.2:p.Asp198Asn
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17317
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9199
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12833
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30264
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp198Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-41483673-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483673
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483673
    reference: chr 1
allele count: 4
allele frequency: 5.359918529238355e-5
allele num: 74628
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.591C>T
  hgvsp: ENST00000359345.1:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.591C>T
  hgvsp: ENST00000397197.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.591C>T
  hgvsp: ENST00000302946.8:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.591C>T
  hgvsp: ENST00000439569.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-22C>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.591C>T
  hgvsp: ENST00000372613.2:c.591C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 30673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13334
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser197Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-41483674-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483674
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483674
    reference: chr 1
allele count: 1
allele frequency: 1.349636947661079e-5
allele num: 74094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.590C>T
  hgvsp: ENSP00000304401.8:p.Ser197Phe
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.590C>T
  hgvsp: ENSP00000398938.2:p.Ser197Phe
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.590C>T
  hgvsp: ENSP00000352299.1:p.Ser197Phe
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.590C>T
  hgvsp: ENSP00000361696.2:p.Ser197Phe
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-23C>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.590C>T
  hgvsp: ENSP00000380381.2:p.Ser197Phe
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17351
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser197Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-41483678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483678
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483678
    reference: chr 1
allele count: 1
allele frequency: 1.417916796642373e-5
allele num: 70526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.586T>C
  hgvsp: ENSP00000380381.2:p.Cys196Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-27T>C
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.586T>C
  hgvsp: ENSP00000398938.2:p.Cys196Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.586T>C
  hgvsp: ENSP00000304401.8:p.Cys196Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.586T>C
  hgvsp: ENSP00000361696.2:p.Cys196Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.586T>C
  hgvsp: ENSP00000352299.1:p.Cys196Arg
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17413
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys196Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-41483681-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483681
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483681
    reference: chr 1
allele count: 3
allele frequency: 4.441943794604519e-5
allele num: 67538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.583G>A
  hgvsp: ENSP00000304401.8:p.Val195Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-30G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.583G>A
  hgvsp: ENSP00000380381.2:p.Val195Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.583G>A
  hgvsp: ENSP00000398938.2:p.Val195Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.583G>A
  hgvsp: ENSP00000352299.1:p.Val195Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.583G>A
  hgvsp: ENSP00000361696.2:p.Val195Met
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val195Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

1-41483681-CGCCGCTGGGCCGGCCCTGGCAGCTCTGCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483681
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483652
    reference: chr 1
allele count: 1
allele frequency: 1.48064793153484e-5
allele num: 67538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsp: ENSP00000304401.8:p.Leu185ArgfsTer37
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsp: ENSP00000398938.2:p.Leu185ArgfsTer37
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsp: ENSP00000361696.2:p.Leu185ArgfsTer37
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsp: ENSP00000380381.2:p.Leu185ArgfsTer37
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsp: ENSP00000352299.1:p.Leu185ArgfsTer37
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31071
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu185ArgfsTer37
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CGCCGCTGGGCCGGCCCTGGCAGCTCTGCA
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-41483684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483684
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483684
    reference: chr 1
allele count: 10
allele frequency: 1.533413070813016e-4
allele num: 65214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.580G>A
  hgvsp: ENSP00000380381.2:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-33G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.580G>A
  hgvsp: ENSP00000398938.2:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.580G>A
  hgvsp: ENSP00000352299.1:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.580G>A
  hgvsp: ENSP00000361696.2:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.580G>A
  hgvsp: ENSP00000304401.8:p.Gly194Ser
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16682
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23528
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9604
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly194Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

1-41483685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483685
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483685
    reference: chr 1
allele count: 316
allele frequency: 4.980142469898506e-3
allele num: 63452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.579C>T
  hgvsp: ENST00000397197.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.579C>T
  hgvsp: ENST00000439569.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.579C>T
  hgvsp: ENST00000372613.2:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.579C>T
  hgvsp: ENST00000302946.8:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.579C>T
  hgvsp: ENST00000359345.1:c.579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-34C>T
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7772
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 1.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23762
  bin: 7.5e0
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 9352
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.75e1
  variant carriers: 306
genotype quality: GenotypeQuality
  all individuals: 4421
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser193Ser
num of homozygotes: 2
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-41483688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483688
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483688
    reference: chr 1
allele count: 2
allele frequency: 3.178437480134766e-5
allele num: 62924
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.576C>A
  hgvsp: ENST00000359345.1:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.576C>A
  hgvsp: ENST00000397197.2:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.576C>A
  hgvsp: ENST00000372613.2:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-37C>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.576C>A
  hgvsp: ENST00000302946.8:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.576C>A
  hgvsp: ENST00000439569.2:c.576C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4587
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10126
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro192Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/1-41483692-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483692
    reference: chr 1
allele count: 1
allele frequency: 1.678584617450566e-5
allele num: 59574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.572G>T
  hgvsp: ENSP00000380381.2:p.Arg191Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.572G>T
  hgvsp: ENSP00000352299.1:p.Arg191Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.572G>T
  hgvsp: ENSP00000361696.2:p.Arg191Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.572G>T
  hgvsp: ENSP00000304401.8:p.Arg191Leu
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-41G>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.572G>T
  hgvsp: ENSP00000398938.2:p.Arg191Leu
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg191Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-41483692-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483692
    reference: chr 1
allele count: 2
allele frequency: 3.357169234901131e-5
allele num: 59574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.572G>A
  hgvsp: ENSP00000398938.2:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.572G>A
  hgvsp: ENSP00000380381.2:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-41G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.572G>A
  hgvsp: ENSP00000352299.1:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.572G>A
  hgvsp: ENSP00000361696.2:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.572G>A
  hgvsp: ENSP00000304401.8:p.Arg191Gln
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15879
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg191Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-41483693-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483693
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483693
    reference: chr 1
allele count: 85
allele frequency: 1.459327679153933e-3
allele num: 58246
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.571C>T
  hgvsp: ENSP00000352299.1:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.571C>T
  hgvsp: ENSP00000380381.2:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.571C>T
  hgvsp: ENSP00000304401.8:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.571C>T
  hgvsp: ENSP00000398938.2:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-42C>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.571C>T
  hgvsp: ENSP00000361696.2:p.Arg191Trp
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 25648
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 15716
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32738
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg191Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-41483693-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483693
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483693
    reference: chr 1
allele count: 1
allele frequency: 1.716856093122274e-5
allele num: 58246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.571C>G
  hgvsp: ENSP00000361696.2:p.Arg191Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.571C>G
  hgvsp: ENSP00000352299.1:p.Arg191Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.571C>G
  hgvsp: ENSP00000398938.2:p.Arg191Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.571C>G
  hgvsp: ENSP00000304401.8:p.Arg191Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-42C>G
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.571C>G
  hgvsp: ENSP00000380381.2:p.Arg191Gly
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg191Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

1-41483695-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483695
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483695
    reference: chr 1
allele count: 4
allele frequency: 6.944926731022988e-5
allele num: 57596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.569G>A
  hgvsp: ENSP00000380381.2:p.Gly190Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.569G>A
  hgvsp: ENSP00000352299.1:p.Gly190Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-44G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.569G>A
  hgvsp: ENSP00000304401.8:p.Gly190Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.569G>A
  hgvsp: ENSP00000398938.2:p.Gly190Asp
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.569G>A
  hgvsp: ENSP00000361696.2:p.Gly190Asp
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26082
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly190Asp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-41483696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483696
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483696
    reference: chr 1
allele count: 1
allele frequency: 1.752725488134048e-5
allele num: 57054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-45G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.568G>A
  hgvsp: ENSP00000380381.2:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.568G>A
  hgvsp: ENSP00000304401.8:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.568G>A
  hgvsp: ENSP00000361696.2:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.568G>A
  hgvsp: ENSP00000352299.1:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.568G>A
  hgvsp: ENSP00000398938.2:p.Gly190Ser
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33503
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly190Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-41483713-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483713
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483713
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 47906
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.551A>G
  hgvsp: ENSP00000352299.1:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.551A>G
  hgvsp: ENSP00000361696.2:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.551A>G
  hgvsp: ENSP00000304401.8:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-62A>G
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.551A>G
  hgvsp: ENSP00000380381.2:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.551A>G
  hgvsp: ENSP00000398938.2:p.Gln184Arg
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28331
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2770
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln184Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-41483721-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483721
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483721
    reference: chr 1
allele count: 1
allele frequency: 2.265929484274449e-5
allele num: 44132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.543G>C
  hgvsp: ENSP00000380381.2:p.Gln181His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.543G>C
  hgvsp: ENSP00000398938.2:p.Gln181His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-70G>C
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.543G>C
  hgvsp: ENSP00000352299.1:p.Gln181His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.543G>C
  hgvsp: ENSP00000304401.8:p.Gln181His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.543G>C
  hgvsp: ENSP00000361696.2:p.Gln181His
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 213
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genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 2451
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln181His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

1-41483725-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483725
    reference: chr 1
allele count: 1
allele frequency: 2.412894508252099e-5
allele num: 41444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.539C>A
  hgvsp: ENSP00000380381.2:p.Pro180His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.539C>A
  hgvsp: ENSP00000398938.2:p.Pro180His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.539C>A
  hgvsp: ENSP00000352299.1:p.Pro180His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.539C>A
  hgvsp: ENSP00000304401.8:p.Pro180His
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-74C>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.539C>A
  hgvsp: ENSP00000361696.2:p.Pro180His
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 11781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro180His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-41483728-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483728
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483728
    reference: chr 1
allele count: 4
allele frequency: 9.858044164037855e-5
allele num: 40576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-77G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.536G>A
  hgvsp: ENSP00000304401.8:p.Arg179Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.536G>A
  hgvsp: ENSP00000361696.2:p.Arg179Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.536G>A
  hgvsp: ENSP00000398938.2:p.Arg179Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.536G>A
  hgvsp: ENSP00000352299.1:p.Arg179Lys
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.536G>A
  hgvsp: ENSP00000380381.2:p.Arg179Lys
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6746
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg179Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-41483730-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483730
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483730
    reference: chr 1
allele count: 12
allele frequency: 3.026329062846767e-4
allele num: 39652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.534T>C
  hgvsp: ENST00000302946.8:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.534T>C
  hgvsp: ENST00000397197.2:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.534T>C
  hgvsp: ENST00000439569.2:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.534T>C
  hgvsp: ENST00000372613.2:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.534T>C
  hgvsp: ENST00000359345.1:c.534T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-79T>C
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29382
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11208
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10687
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6575
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32635
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Asp178Asp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-41483731-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483731
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483731
    reference: chr 1
allele count: 1
allele frequency: 2.56647161482394e-5
allele num: 38964
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.533A>G
  hgvsp: ENSP00000352299.1:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.533A>G
  hgvsp: ENSP00000304401.8:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-80A>G
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.533A>G
  hgvsp: ENSP00000380381.2:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.533A>G
  hgvsp: ENSP00000361696.2:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.533A>G
  hgvsp: ENSP00000398938.2:p.Asp178Gly
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp178Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

1-41483739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483739
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483739
    reference: chr 1
allele count: 2
allele frequency: 5.615769079575448e-5
allele num: 35614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.525G>A
  hgvsp: ENST00000302946.8:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.525G>A
  hgvsp: ENST00000439569.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.525G>A
  hgvsp: ENST00000397197.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.525G>A
  hgvsp: ENST00000372613.2:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-88G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.525G>A
  hgvsp: ENST00000359345.1:c.525G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29388
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr175Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-41483740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483740
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483740
    reference: chr 1
allele count: 1
allele frequency: 2.848515923204011e-5
allele num: 35106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-89C>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.524C>T
  hgvsp: ENSP00000380381.2:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.524C>T
  hgvsp: ENSP00000398938.2:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.524C>T
  hgvsp: ENSP00000361696.2:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.524C>T
  hgvsp: ENSP00000304401.8:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.524C>T
  hgvsp: ENSP00000352299.1:p.Thr175Met
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29278
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5957
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr175Met
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-41483763-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483763
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483763
    reference: chr 1
allele count: 1
allele frequency: 3.983428935627788e-5
allele num: 25104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.501G>C
  hgvsp: ENST00000372613.2:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-112G>C
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.501G>C
  hgvsp: ENST00000397197.2:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.501G>C
  hgvsp: ENST00000439569.2:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.501G>C
  hgvsp: ENST00000302946.8:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.501G>C
  hgvsp: ENST00000359345.1:c.501G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19686
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25947
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro167Pro
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

1-41483763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483763
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483763
    reference: chr 1
allele count: 23
allele frequency: 9.161886551943913e-4
allele num: 25104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.501G>A
  hgvsp: ENST00000439569.2:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.501G>A
  hgvsp: ENST00000397197.2:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-112G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.501G>A
  hgvsp: ENST00000372613.2:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.501G>A
  hgvsp: ENST00000302946.8:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.501G>A
  hgvsp: ENST00000359345.1:c.501G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7862
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19921
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26251
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19686
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25947
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro167Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-41483765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483765
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483765
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 24154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.499C>G
  hgvsp: ENSP00000380381.2:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.499C>G
  hgvsp: ENSP00000398938.2:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.499C>G
  hgvsp: ENSP00000304401.8:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.499C>G
  hgvsp: ENSP00000352299.1:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-114C>G
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.499C>G
  hgvsp: ENSP00000361696.2:p.Pro167Ala
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25801
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20695
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro167Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-41483766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483766
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 24052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.498C>T
  hgvsp: ENST00000439569.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.498C>T
  hgvsp: ENST00000397197.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.498C>T
  hgvsp: ENST00000372613.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-115C>T
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.498C>T
  hgvsp: ENST00000302946.8:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.498C>T
  hgvsp: ENST00000359345.1:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25856
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20782
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1007
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val166Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

1-41483768-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483768
    reference: chr 1
allele count: 1
allele frequency: 4.249532551419344e-5
allele num: 23532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-117G>A
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.496G>A
  hgvsp: ENSP00000352299.1:p.Val166Ile
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.496G>A
  hgvsp: ENSP00000398938.2:p.Val166Ile
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.496G>A
  hgvsp: ENSP00000361696.2:p.Val166Ile
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.496G>A
  hgvsp: ENSP00000380381.2:p.Val166Ile
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.496G>A
  hgvsp: ENSP00000304401.8:p.Val166Ile
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val166Ile
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum

1-41483780-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483780
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483780
    reference: chr 1
allele count: 599
allele frequency: 2.95044823170131e-2
allele num: 20302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.484C>A
  hgvsp: ENSP00000361696.2:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.484C>A
  hgvsp: ENSP00000398938.2:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.484C>A
  hgvsp: ENSP00000352299.1:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.484C>A
  hgvsp: ENSP00000380381.2:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.484C>A
  hgvsp: ENSP00000304401.8:p.Pro162Thr
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-129C>A
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 22674
  bin: 7.5e0
  variant carriers: 552
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 2.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6787
  bin: 1.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 25262
  bin: 2.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 6.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.75e1
  variant carriers: 580
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 6.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 45
hgvs: p.Pro162Thr
num of homozygotes: 10
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

1-41483805-G-GTCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41483805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 41483808
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 9880
alternate allele: GTCC
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000352299
  ensembl transcript: ENST00000359345
  gene symbol: SLFNL1
  hgvsc: ENST00000359345.1:c.456_458dupGGA
  hgvsp: ENSP00000352299.1:p.Glu152dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000380381
  ensembl transcript: ENST00000397197
  gene symbol: SLFNL1
  hgvsc: ENST00000397197.2:c.456_458dupGGA
  hgvsp: ENSP00000380381.2:p.Glu152dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361696
  ensembl transcript: ENST00000372613
  gene symbol: SLFNL1
  hgvsc: ENST00000372613.2:c.456_458dupGGA
  hgvsp: ENSP00000361696.2:p.Glu152dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000361694
  ensembl transcript: ENST00000372611
  gene symbol: SLFNL1
  hgvsc: ENST00000372611.1:c.436-157_436-155dupGGA
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000304401
  ensembl transcript: ENST00000302946
  gene symbol: SLFNL1
  hgvsc: ENST00000302946.8:c.456_458dupGGA
  hgvsp: ENSP00000304401.8:p.Glu152dup
  variant of: http://identifiers.org/hgnc/26313
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000171790
  ensembl protein: ENSP00000398938
  ensembl transcript: ENST00000439569
  gene symbol: SLFNL1
  hgvsc: ENST00000439569.2:c.456_458dupGGA
  hgvsp: ENSP00000398938.2:p.Glu152dup
  variant of: http://identifiers.org/hgnc/26313
canonical: true
consequence: inframe insertion
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34312
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu152dup
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2415
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7248
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.739452756436177e-5
allele num: 14838
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.02e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

DP
type: SiteQuality
SIO_000300: 1.552898e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.701e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.919e0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7276
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539266693347289e-5
allele num: 64966
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.704735376044568e-5
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.965795164143896e-4
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

FS
type: SiteQuality
SIO_000300: 1.268e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.554783e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44511
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.152710268873438e-5
allele num: 65012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.326435866825839e-4
allele num: 15078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.482500435312555e-4
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

FS
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 1.557847e6

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.603275224511358e-5
allele num: 15144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537042729787888e-5
allele num: 65060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.559387e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.151e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.18e-1

QD
type: SiteQuality
SIO_000300: 1.404e1

GenotypeQuality
all individuals: 394
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.961938395134393e-4
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.608922515001304e-4
allele num: 15332
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 3.036673674375146e-3
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.564315e6

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533930543624985e-5
allele num: 65192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.093e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: -1.401e0

VQSLOD
type: SiteQuality
SIO_000300: -2.253e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e0

FS
type: SiteQuality
SIO_000300: 7.048e0

DP
type: SiteQuality
SIO_000300: 1.564763e6

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45538
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532707988474036e-5
allele num: 65244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.539e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.567181e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.247e0

QD
type: SiteQuality
SIO_000300: 1.205e1

FS
type: SiteQuality
SIO_000300: 2.252e0

VQSLOD
type: SiteQuality
SIO_000300: -3.682e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532050496384361e-5
allele num: 65272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.662e0

DP
type: SiteQuality
SIO_000300: 1.568097e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

QD
type: SiteQuality
SIO_000300: 1.197e1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45865
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530737203036983e-5
allele num: 65328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.202e0

MQRankSum
type: SiteQuality
SIO_000300: -9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.261e0

VQSLOD
type: SiteQuality
SIO_000300: -8.34e-2

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.570854e6

QD
type: SiteQuality
SIO_000300: 9.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.060537430372773e-5
allele num: 65348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15776
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 1.571703e6

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

FS
type: SiteQuality
SIO_000300: 1.369e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.379e1

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
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variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.910833007430582e-4
allele num: 10228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.47e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 9.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

DP
type: SiteQuality
SIO_000300: 1.574815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.06e-1

GenotypeQuality
all individuals: 46092
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.056514961640737e-5
allele num: 65434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 5.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.347e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

DP
type: SiteQuality
SIO_000300: 1.575115e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.98752446183953e-4
allele num: 65408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

FS
type: SiteQuality
SIO_000300: 2.595e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.572175e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1686
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 583
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
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GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.235941169200346e-4
allele num: 16182
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

FS
type: SiteQuality
SIO_000300: 7.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.55e-2

QD
type: SiteQuality
SIO_000300: 1.029e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

DP
type: SiteQuality
SIO_000300: 1.571906e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528724737823707e-5
allele num: 65414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.55e-2

QD
type: SiteQuality
SIO_000300: 1.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 7.539e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.571906e6

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45806
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 7179
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6052
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.973554371422933e-4
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 3.202e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.25e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.565019e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 49

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 7.530814864906403e-4
allele num: 65066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.245e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.553332e6

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 7.25e1
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
all individuals: 230
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GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.17283950617284e-5
allele num: 16200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.221405957028249e-5
allele num: 65066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.793527963418924e-5
allele num: 11372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 1.553332e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

QD
type: SiteQuality
SIO_000300: 1.245e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

GenotypeQuality
all individuals: 1572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 45834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 7000
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GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.934432743890324e-5
allele num: 10066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.253e0

QD
type: SiteQuality
SIO_000300: 9.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.288e0

DP
type: SiteQuality
SIO_000300: 1.547987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539645881447267e-5
allele num: 64950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -1.096e0

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

DP
type: SiteQuality
SIO_000300: 1.543276e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.095e1

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 510
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variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.540879534038029e-5
allele num: 64898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.655e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.540062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

QD
type: SiteQuality
SIO_000300: 1.1e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.002807862013638e-4
allele num: 9972
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.344e1

DP
type: SiteQuality
SIO_000300: 1.530978e6

FS
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3582
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64408
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

DP
type: SiteQuality
SIO_000300: 1.518826e6

QD
type: SiteQuality
SIO_000300: 1.62e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.976e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

GenotypeQuality
all individuals: 1001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 5935
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.171783811215428e-5
allele num: 63056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.0e-2

FS
type: SiteQuality
SIO_000300: 2.704e0

QD
type: SiteQuality
SIO_000300: 1.411e1

MQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

DP
type: SiteQuality
SIO_000300: 1.445629e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 6558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1188
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
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variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.228497600590623e-5
allele num: 10836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.190199706501627e-5
allele num: 62692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.426098e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

FS
type: SiteQuality
SIO_000300: 6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

GenotypeQuality
all individuals: 1329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1092
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variant carriers: 0

GenotypeQuality
all individuals: 5415
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.37991e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 8.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.386e0

FS
type: SiteQuality
SIO_000300: 1.394e0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 62
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.441638752898738e-5
allele num: 15524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 8.51e0

FS
type: SiteQuality
SIO_000300: 1.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.37991e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.386e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1066
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GenotypeQuality
all individuals: 48
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.649729444371123e-5
allele num: 60616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.325139e6

VQSLOD
type: SiteQuality
SIO_000300: -6.771e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

FS
type: SiteQuality
SIO_000300: 8.965999999999999e0

QD
type: SiteQuality
SIO_000300: 1.563e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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GenotypeQuality
all individuals: 910
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 564
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GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.107174490699734e-4
allele num: 9032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 5.051e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.292221e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

QD
type: SiteQuality
SIO_000300: 1.313e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.327316166710911e-4
allele num: 7534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.292221e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.051e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.728569506122998e-5
allele num: 14862
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4724
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7268
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.232185e6

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
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SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.84e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6972
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.242059689839952e-4
allele num: 56358
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.077e1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

DP
type: SiteQuality
SIO_000300: 1.175471e6

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14252
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.855547462976451e-4
allele num: 8238
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.118568232662192e-4
allele num: 8940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 1.128623e6

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 7.542e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.149161112387957e-4
allele num: 8702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4218
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.775e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

FS
type: SiteQuality
SIO_000300: 3.218e0

DP
type: SiteQuality
SIO_000300: 1.093413e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.158e0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.835e0

DP
type: SiteQuality
SIO_000300: 1.082579e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.215e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 4.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.197351374694113e-5
allele num: 13894
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.876e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.064002e6

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

FS
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.285677552069941e-4
allele num: 7778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13806
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 1.74e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.76e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.044289e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.946585688702017e-5
allele num: 51372
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 2.178649237472767e-4
allele num: 13770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

InbreedingCoeff
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SIO_000300: -4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 22550
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.292882147024503e-5
allele num: 13712
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.30582397492818e-4
allele num: 7658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 1.029558e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.42e-1

GenotypeQuality
all individuals: 1290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 6.144015728680265e-4
allele num: 8138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3942
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.42e-1

QD
type: SiteQuality
SIO_000300: 1.271e1

DP
type: SiteQuality
SIO_000300: 1.029558e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 7.365e0

VQSLOD
type: SiteQuality
SIO_000300: 3.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1611
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7488
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.271617497456765e-4
allele num: 7864
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49674
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.291e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.97372e5

QD
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

GenotypeQuality
all individuals: 789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.517666516313337e-5
allele num: 13302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-2

DP
type: SiteQuality
SIO_000300: 9.77466e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.21e-1

QD
type: SiteQuality
SIO_000300: 8.77e0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 8.77288e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

QD
type: SiteQuality
SIO_000300: 1.614e1

GenotypeQuality
all individuals: 554
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.401536983669549e-5
allele num: 41640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12256
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.022526146419951e-4
allele num: 4972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

QD
type: SiteQuality
SIO_000300: 1.326e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 8.36568e5

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12234
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.023472278429786e-4
allele num: 4942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.228218966846569e-5
allele num: 41504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.028e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.215e1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 8.34878e5

GenotypeQuality
all individuals: 30992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.429071123202487e-5
allele num: 41168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.049999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.25535e5

QD
type: SiteQuality
SIO_000300: 1.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

GenotypeQuality
all individuals: 540
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.562262990673363e-5
allele num: 39028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

QD
type: SiteQuality
SIO_000300: 1.068e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

DP
type: SiteQuality
SIO_000300: 7.91746e5

GenotypeQuality
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9888
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.686150209519716e-5
allele num: 37228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.593244699964068e-4
allele num: 5566
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 7.70965e5

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 8.042999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 26
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.686150209519716e-5
allele num: 37228
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.70965e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 8.042999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 904
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1611
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 8.641548565502938e-4
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

DP
type: SiteQuality
SIO_000300: 7.54862e5

FS
type: SiteQuality
SIO_000300: 7.76e0

GenotypeQuality
all individuals: 330
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2892
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2221
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 651
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 693
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 31288
bin: 2.25e1
variant carriers: 2

African
type: Population
allele count: 6
allele frequency: 1.167769560140132e-3
allele num: 5138
num of homozygotes: 0

South Asian
type: Population
allele count: 46
allele frequency: 4.027315706531255e-3
allele num: 11422
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 209
allele frequency: 5.992659708682188e-3
allele num: 34876
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 3.098373353989156e-3
allele num: 5164
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.42600679281902e-4
allele num: 4122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 34
allele frequency: 1.497797356828194e-2
allele num: 2270
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 8.695652173913044e-3
allele num: 460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 7.50448e5

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.788041905423396e-5
allele num: 34554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 6.26e0

DP
type: SiteQuality
SIO_000300: 7.38962e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.763e-1

GenotypeQuality
all individuals: 416
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 503
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.060912151821243e-5
allele num: 32670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

DP
type: SiteQuality
SIO_000300: 7.17173e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

QD
type: SiteQuality
SIO_000300: 4.25e0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
all individuals: 1886
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9284
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.121824303642486e-5
allele num: 32670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.27e-1

DP
type: SiteQuality
SIO_000300: 7.17173e5

FS
type: SiteQuality
SIO_000300: 4.643e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 4.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
all individuals: 145
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2593
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 777
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8881
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.495513459621137e-3
allele num: 2006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 75
allele frequency: 2.354048964218456e-3
allele num: 31860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.815870710005448e-4
allele num: 11014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 1.078515962036238e-3
allele num: 4636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 7.09654e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
all individuals: 399
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32738
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.663825253063399e-4
allele num: 3754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 5.81e-1

DP
type: SiteQuality
SIO_000300: 7.09654e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 1729
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.271940981938438e-4
allele num: 31448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 7.941e0

DP
type: SiteQuality
SIO_000300: 7.04263e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.057e1

GenotypeQuality
all individuals: 2851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2504
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.210479003467318e-5
allele num: 31148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.111e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.98314e5

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 331
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3110
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

QD
type: SiteQuality
SIO_000300: 6.12e0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

DP
type: SiteQuality
SIO_000300: 6.36944e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.92e-2

GenotypeQuality
all individuals: 114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8824
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.293807641633729e-4
allele num: 3036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

DP
type: SiteQuality
SIO_000300: 6.17503e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.077e1

VQSLOD
type: SiteQuality
SIO_000300: -1.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.299e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1654
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32437
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.556187766714083e-4
allele num: 2812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.024e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-2

DP
type: SiteQuality
SIO_000300: 5.98348e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 9.77e0

GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 33040
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.850481125092524e-4
allele num: 21616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.93904e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

GenotypeQuality
all individuals: 1603
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 560
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 2.264150943396227e-3
allele num: 2650
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 2.423263327948304e-3
allele num: 2476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

DP
type: SiteQuality
SIO_000300: 5.85949e5

FS
type: SiteQuality
SIO_000300: 1.813e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

QD
type: SiteQuality
SIO_000300: 1.365e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3199
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 1

GenotypeQuality
all individuals: 1844
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.841677156967173e-5
allele num: 20654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.589e0

DP
type: SiteQuality
SIO_000300: 5.80664e5

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

GenotypeQuality
all individuals: 1548
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6121
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.249718785151856e-4
allele num: 8890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 6.184e0

DP
type: SiteQuality
SIO_000300: 5.61032e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.206e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.427113860848801e-5
allele num: 18426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.11e0

VQSLOD
type: SiteQuality
SIO_000300: -2.976e0

DP
type: SiteQuality
SIO_000300: 5.54574e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 4.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.68e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3236
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.802746566791511e-5
allele num: 12816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.153e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

DP
type: SiteQuality
SIO_000300: 4.5546e5

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.864e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 22

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.560549313358302e-4
allele num: 12816
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.41643059490085e-3
allele num: 1412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 1.211734693877551e-2
allele num: 1568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

DP
type: SiteQuality
SIO_000300: 4.5546e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 3295
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GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6980
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.42626e5

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 7.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

GenotypeQuality
all individuals: 307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.41759e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.62e1

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.447372867038352e-5
allele num: 11838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.664e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.37e-2

QD
type: SiteQuality
SIO_000300: 1.689e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.476e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.35059e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 1789
bin: 1.25e1
variant carriers: 28

GenotypeQuality
all individuals: 787
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 21474
bin: 2.25e1
variant carriers: 43

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 25131
bin: 7.5e0
variant carriers: 23

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 60

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 61

GenotypeQuality
all individuals: 87
bin: 7.25e1
variant carriers: 39

GenotypeQuality
all individuals: 2488
bin: 1.75e1
variant carriers: 25

European (Non-Finnish)
type: Population
allele count: 306
allele frequency: 3.040540540540541e-2
allele num: 10064
num of homozygotes: 5

Latino
type: Population
allele count: 17
allele frequency: 1.717171717171717e-2
allele num: 990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 4.477611940298507e-2
allele num: 402
num of homozygotes: 0

African
type: Population
allele count: 49
allele frequency: 3.864353312302839e-2
allele num: 1268
num of homozygotes: 0

South Asian
type: Population
allele count: 193
allele frequency: 3.083067092651757e-2
allele num: 6260
num of homozygotes: 4

East Asian
type: Population
allele count: 8
allele frequency: 7.029876977152899e-3
allele num: 1138
num of homozygotes: 1

Other
type: Population
allele count: 8
allele frequency: 4.444444444444445e-2
allele num: 180
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.92162e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0