2-210559728-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559728
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559728
    reference: chr 2
allele count: 2
allele frequency: 1.652428243303535e-5
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5273G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2834G>T
  hgvsp: ENSP00000353508.4:p.Gly945Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5273G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5273G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1538G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5273G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2822G>T
  hgvsp: ENSP00000392164.1:p.Gly941Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5273G>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29778
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly945Val
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

2-210559729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559729
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559729
    reference: chr 2
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2835A>G
  hgvsp: ENST00000360351.4:c.2835A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5272A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5272A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5272A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2823A>G
  hgvsp: ENST00000447185.1:c.2823A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5272A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5272A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1537A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly945Gly
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-210559734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559734
    reference: chr 2
allele count: 3
allele frequency: 2.478724283235561e-5
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5267G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2828G>A
  hgvsp: ENSP00000392164.1:p.Ser943Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5267G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1532G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2840G>A
  hgvsp: ENSP00000353508.4:p.Ser947Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5267G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5267G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5267G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser947Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

2-210559743-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559743
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559743
    reference: chr 2
allele count: 9
allele frequency: 7.436172849706684e-5
allele num: 121030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2837T>C
  hgvsp: ENSP00000392164.1:p.Phe946Ser
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5258T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5258T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5258T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5258T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2849T>C
  hgvsp: ENSP00000353508.4:p.Phe950Ser
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1523T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5258T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe950Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

2-210559751-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559751
    reference: chr 2
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2857G>C
  hgvsp: ENSP00000353508.4:p.Glu953Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5250G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1515G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5250G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5250G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5250G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2845G>C
  hgvsp: ENSP00000392164.1:p.Glu949Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5250G>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10061
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu953Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-210559770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559770
    reference: chr 2
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1496G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5231G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5231G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2876G>A
  hgvsp: ENSP00000353508.4:p.Arg959Lys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2864G>A
  hgvsp: ENSP00000392164.1:p.Arg955Lys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5231G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5231G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5231G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg959Lys
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

2-210559770-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559770
    reference: chr 2
allele count: 3
allele frequency: 2.478724283235561e-5
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5231G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5231G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5231G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2864G>T
  hgvsp: ENSP00000392164.1:p.Arg955Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2876G>T
  hgvsp: ENSP00000353508.4:p.Arg959Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1496G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5231G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5231G>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29787
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg959Met
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

2-210559771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559771
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559771
    reference: chr 2
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5230G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2865G>A
  hgvsp: ENST00000447185.1:c.2865G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5230G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5230G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5230G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1495G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5230G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2877G>A
  hgvsp: ENST00000360351.4:c.2877G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg959Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-210559783-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559783
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559783
    reference: chr 2
allele count: 6
allele frequency: 4.9573666468372e-5
allele num: 121032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5218A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1483A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5218A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5218A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5218A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5218A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2889A>C
  hgvsp: ENST00000360351.4:c.2889A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2877A>C
  hgvsp: ENST00000447185.1:c.2877A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21668
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10065
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val963Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

2-210559785-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559785
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559785
    reference: chr 2
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5216T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5216T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1481T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2879T>C
  hgvsp: ENSP00000392164.1:p.Leu960Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5216T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5216T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2891T>C
  hgvsp: ENSP00000353508.4:p.Leu964Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5216T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29777
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8152
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu964Pro
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-210559786-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559786
    reference: chr 2
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5215A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1480A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2880A>G
  hgvsp: ENST00000447185.1:c.2880A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2892A>G
  hgvsp: ENST00000360351.4:c.2892A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5215A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5215A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5215A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5215A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11946
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu964Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

2-210559792-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559792
    reference: chr 2
allele count: 1
allele frequency: 8.262277744728666e-6
allele num: 121032
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2898G>T
  hgvsp: ENSP00000353508.4:p.Lys966Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1474G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5209G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5209G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2886G>T
  hgvsp: ENSP00000392164.1:p.Lys962Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5209G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5209G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5209G>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys966Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

2-210559793-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559793
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559793
    reference: chr 2
allele count: 8
allele frequency: 6.609276119033063e-5
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5208A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2887A>G
  hgvsp: ENSP00000392164.1:p.Ser963Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1473A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5208A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2899A>G
  hgvsp: ENSP00000353508.4:p.Ser967Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5208A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5208A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5208A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser967Gly
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-210559798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559798
    reference: chr 2
allele count: 5
allele frequency: 4.130661070997802e-5
allele num: 121046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5203A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5203A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5203A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1468A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5203A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5203A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2892A>G
  hgvsp: ENST00000447185.1:c.2892A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2904A>G
  hgvsp: ENST00000360351.4:c.2904A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu968Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-210559819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559819
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559819
    reference: chr 2
allele count: 23
allele frequency: 1.89947640519961e-4
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5182A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2913A>G
  hgvsp: ENST00000447185.1:c.2913A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5182A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5182A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1447A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2925A>G
  hgvsp: ENST00000360351.4:c.2925A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5182A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5182A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29913
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu975Glu
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

2-210559820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559820
    reference: chr 2
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5181C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2914C>T
  hgvsp: ENSP00000392164.1:p.His972Tyr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5181C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5181C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5181C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5181C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1446C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2926C>T
  hgvsp: ENSP00000353508.4:p.His976Tyr
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His976Tyr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS

2-210559821-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559821
    reference: chr 2
allele count: 494
allele frequency: 4.080014536084177e-3
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5180A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1445A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2927A>T
  hgvsp: ENSP00000353508.4:p.His976Leu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2915A>T
  hgvsp: ENSP00000392164.1:p.His972Leu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5180A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5180A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5180A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5180A>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11897
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8770
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 6.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 5.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 5.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 21624
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His976Leu
num of homozygotes: 13
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

2-210559822-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559822
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559822
    reference: chr 2
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5179T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5179T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1444T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2928T>C
  hgvsp: ENST00000360351.4:c.2928T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5179T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2916T>C
  hgvsp: ENST00000447185.1:c.2916T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5179T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5179T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9973
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His976His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

2-210559841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559841
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559841
    reference: chr 2
allele count: 1
allele frequency: 8.254775387561705e-6
allele num: 121142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5160G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2947G>A
  hgvsp: ENSP00000353508.4:p.Ala983Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2935G>A
  hgvsp: ENSP00000392164.1:p.Ala979Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5160G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5160G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5160G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1425G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5160G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala983Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-210559841-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559841
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559841
    reference: chr 2
allele count: 2
allele frequency: 1.650955077512341e-5
allele num: 121142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5160G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5160G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5160G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1425G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2935G>C
  hgvsp: ENSP00000392164.1:p.Ala979Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5160G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5160G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2947G>C
  hgvsp: ENSP00000353508.4:p.Ala983Pro
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala983Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

2-210559846-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559846
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559846
    reference: chr 2
allele count: 7
allele frequency: 5.78368999421631e-5
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5155T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2940T>G
  hgvsp: ENST00000447185.1:c.2940T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5155T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5155T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5155T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1420T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2952T>G
  hgvsp: ENST00000360351.4:c.2952T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5155T>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 11975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8140
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9884
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Gly984Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

2-210559854-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559854
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559854
    reference: chr 2
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2960T>C
  hgvsp: ENSP00000353508.4:p.Ile987Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5147T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5147T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2948T>C
  hgvsp: ENSP00000392164.1:p.Ile983Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5147T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5147T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5147T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1412T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8181
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile987Thr
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/2-210559858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559858
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559858
    reference: chr 2
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5143A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2964A>C
  hgvsp: ENSP00000353508.4:p.Glu988Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1408A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5143A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5143A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2952A>C
  hgvsp: ENSP00000392164.1:p.Glu984Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5143A>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5143A>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu988Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

2-210559859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559859
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559859
    reference: chr 2
allele count: 4
allele frequency: 3.300221114814693e-5
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1407A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5142A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5142A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5142A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2965A>G
  hgvsp: ENSP00000353508.4:p.Thr989Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2953A>G
  hgvsp: ENSP00000392164.1:p.Thr985Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5142A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5142A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr989Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-210559860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559860
    reference: chr 2
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2954C>T
  hgvsp: ENSP00000392164.1:p.Thr985Ile
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2966C>T
  hgvsp: ENSP00000353508.4:p.Thr989Ile
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1406C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5141C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5141C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5141C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5141C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5141C>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9979
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr989Ile
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-210559864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559864
    reference: chr 2
allele count: 5
allele frequency: 4.125004125004125e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5137C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1402C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5137C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2958C>T
  hgvsp: ENST00000447185.1:c.2958C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5137C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5137C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2970C>T
  hgvsp: ENST00000360351.4:c.2970C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5137C>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe990Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

2-210559865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559865
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559865
    reference: chr 2
allele count: 2891
allele frequency: 2.384919980201287e-2
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1401G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2959G>A
  hgvsp: ENSP00000392164.1:p.Gly987Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5136G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5136G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5136G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2971G>A
  hgvsp: ENSP00000353508.4:p.Gly991Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5136G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5136G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 4.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.25e1
  variant carriers: 193
genotype depth: GenotypeDepth
  all individuals: 21568
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 6.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 4.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 8.75e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 5.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 9.75e1
  variant carriers: 1158
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 5.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11438
  bin: 9.75e1
  variant carriers: 2839
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly991Arg
num of homozygotes: 49
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-210559880-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559880
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559880
    reference: chr 2
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2986T>A
  hgvsp: ENSP00000353508.4:p.Tyr996Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2974T>A
  hgvsp: ENSP00000392164.1:p.Tyr992Asn
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5121T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5121T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1386T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5121T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5121T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5121T>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr996Asn
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

2-210559881-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559881
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559881
    reference: chr 2
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5120A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2987A>G
  hgvsp: ENSP00000353508.4:p.Tyr996Cys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1385A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2975A>G
  hgvsp: ENSP00000392164.1:p.Tyr992Cys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5120A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5120A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5120A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5120A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9077
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr996Cys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

2-210559890-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559890
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559890
    reference: chr 2
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5111C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1376C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5111C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5111C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.2996C>G
  hgvsp: ENSP00000353508.4:p.Ala999Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2984C>G
  hgvsp: ENSP00000392164.1:p.Ala995Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5111C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5111C>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9078
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31471
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala999Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-210559896-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559896
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559896
    reference: chr 2
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5105C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1370C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2990C>A
  hgvsp: ENSP00000392164.1:p.Ala997Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3002C>A
  hgvsp: ENSP00000353508.4:p.Ala1001Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5105C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5105C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5105C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5105C>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala1001Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-210559898-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559898
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559898
    reference: chr 2
allele count: 10
allele frequency: 8.246606521416437e-5
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5103A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5103A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5103A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5103A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2992A>G
  hgvsp: ENSP00000392164.1:p.Lys998Glu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3004A>G
  hgvsp: ENSP00000353508.4:p.Lys1002Glu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1368A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5103A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3067
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys1002Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

2-210559902-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559902
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559902
    reference: chr 2
allele count: 10
allele frequency: 8.246470510621453e-5
allele num: 121264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5099A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2996A>T
  hgvsp: ENSP00000392164.1:p.Asp999Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5099A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3008A>T
  hgvsp: ENSP00000353508.4:p.Asp1003Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5099A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5099A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1364A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5099A>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9046
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9078
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp1003Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

2-210559904-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559904
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559904
    reference: chr 2
allele count: 8
allele frequency: 6.597067603450266e-5
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1362T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5097T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5097T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5097T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3010T>G
  hgvsp: ENSP00000353508.4:p.Leu1004Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5097T>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.2998T>G
  hgvsp: ENSP00000392164.1:p.Leu1000Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5097T>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8371
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu1004Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-210559913-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559913
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559913
    reference: chr 2
allele count: 11
allele frequency: 9.072763563781528e-5
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5088C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5088C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3019C>A
  hgvsp: ENSP00000353508.4:p.Pro1007Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5088C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3007C>A
  hgvsp: ENSP00000392164.1:p.Pro1003Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5088C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1353C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5088C>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9072
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8368
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1007Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-210559914-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559914
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559914
    reference: chr 2
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3008C>A
  hgvsp: ENSP00000392164.1:p.Pro1003Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3020C>A
  hgvsp: ENSP00000353508.4:p.Pro1007Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5087C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5087C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5087C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5087C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1352C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5087C>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro1007Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

2-210559926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559926
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559926
    reference: chr 2
allele count: 1
allele frequency: 8.248511143738554e-6
allele num: 121234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5075C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5075C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1340C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3032C>T
  hgvsp: ENSP00000353508.4:p.Ser1011Phe
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3020C>T
  hgvsp: ENSP00000392164.1:p.Ser1007Phe
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5075C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5075C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5075C>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser1011Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

2-210559946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559946
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559946
    reference: chr 2
allele count: 5
allele frequency: 4.127115146512587e-5
allele num: 121150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1320G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5055G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5055G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5055G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3052G>A
  hgvsp: ENSP00000353508.4:p.Gly1018Ser
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3040G>A
  hgvsp: ENSP00000392164.1:p.Gly1014Ser
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5055G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5055G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly1018Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-210559946-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559946
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559946
    reference: chr 2
allele count: 1
allele frequency: 8.254230293025175e-6
allele num: 121150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5055G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5055G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3052G>C
  hgvsp: ENSP00000353508.4:p.Gly1018Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5055G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3040G>C
  hgvsp: ENSP00000392164.1:p.Gly1014Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5055G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5055G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1320G>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly1018Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-210559952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559952
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559952
    reference: chr 2
allele count: 4
allele frequency: 3.302128221638846e-5
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5049A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3058A>G
  hgvsp: ENSP00000353508.4:p.Ser1020Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5049A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1314A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5049A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3046A>G
  hgvsp: ENSP00000392164.1:p.Ser1016Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5049A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5049A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9074
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser1020Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

2-210559959-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559959
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559959
    reference: chr 2
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1307T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3065T>C
  hgvsp: ENSP00000353508.4:p.Val1022Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5042T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5042T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5042T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5042T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3053T>C
  hgvsp: ENSP00000392164.1:p.Val1018Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5042T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2294
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8282
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val1022Ala
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-210559960-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559960
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559960
    reference: chr 2
allele count: 12120
allele frequency: 1.001073758982407e-1
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5041G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3054G>T
  hgvsp: ENST00000447185.1:c.3054G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5041G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3066G>T
  hgvsp: ENST00000360351.4:c.3066G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5041G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1306G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5041G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5041G>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 3.75e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 6.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 8.25e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 2.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 4.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 3.25e1
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.25e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20938
  bin: 2.75e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.75e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 9.75e1
  variant carriers: 5043
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 505
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 8.75e1
  variant carriers: 571
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.25e1
  variant carriers: 579
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 5.25e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 498
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28650
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 7.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val1022Val
num of homozygotes: 780
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

2-210559968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559968
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559968
    reference: chr 2
allele count: 4
allele frequency: 3.306440946964687e-5
allele num: 120976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5033T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1298T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3074T>C
  hgvsp: ENSP00000353508.4:p.Ile1025Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5033T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3062T>C
  hgvsp: ENSP00000392164.1:p.Ile1021Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5033T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5033T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5033T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1025Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-210559974-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559974
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559974
    reference: chr 2
allele count: 21
allele frequency: 1.736599242511949e-4
allele num: 120926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5027A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3080A>G
  hgvsp: ENSP00000353508.4:p.Glu1027Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1292A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3068A>G
  hgvsp: ENSP00000392164.1:p.Glu1023Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5027A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5027A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5027A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5027A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu1027Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-210559983-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559983
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559983
    reference: chr 2
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5018C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5018C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1283C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3089C>A
  hgvsp: ENSP00000353508.4:p.Pro1030Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5018C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3077C>A
  hgvsp: ENSP00000392164.1:p.Pro1026Gln
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5018C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5018C>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24951
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2956
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro1030Gln
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

2-210559994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559994
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559994
    reference: chr 2
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5007G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3100G>A
  hgvsp: ENSP00000353508.4:p.Val1034Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5007G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5007G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3088G>A
  hgvsp: ENSP00000392164.1:p.Val1030Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5007G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1272G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5007G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12789
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val1034Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

2-210559999-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210559999
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210559999
    reference: chr 2
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3105A>T
  hgvsp: ENSP00000353508.4:p.Glu1035Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5002A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3093A>T
  hgvsp: ENSP00000392164.1:p.Glu1031Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5002A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5002A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1267A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5002A>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5002A>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu1035Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

2-210560000-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560000
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560000
    reference: chr 2
allele count: 10
allele frequency: 8.277597510098668e-5
allele num: 120808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1266C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3106C>G
  hgvsp: ENSP00000353508.4:p.Gln1036Glu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-5001C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-5001C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-5001C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-5001C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3094C>G
  hgvsp: ENSP00000392164.1:p.Gln1032Glu
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-5001C>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9423
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln1036Glu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-210560002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560002
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560002
    reference: chr 2
allele count: 12
allele frequency: 9.931472837421789e-5
allele num: 120828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4999A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3108A>G
  hgvsp: ENST00000360351.4:c.3108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4999A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4999A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1264A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3096A>G
  hgvsp: ENST00000447185.1:c.3096A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4999A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4999A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8830
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5178
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Gln1036Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-210560004-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560004
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560004
    reference: chr 2
allele count: 2
allele frequency: 1.655437283758505e-5
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3110G>A
  hgvsp: ENSP00000353508.4:p.Gly1037Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4997G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4997G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4997G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4997G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3098G>A
  hgvsp: ENSP00000392164.1:p.Gly1033Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4997G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1262G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly1037Asp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-210560015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560015
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560015
    reference: chr 2
allele count: 3
allele frequency: 2.484266313348791e-5
allele num: 120760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4986G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1251G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3121G>C
  hgvsp: ENSP00000353508.4:p.Ala1041Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4986G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3109G>C
  hgvsp: ENSP00000392164.1:p.Ala1037Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4986G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4986G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4986G>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala1041Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-210560015-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560015
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560015
    reference: chr 2
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1251G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4986G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4986G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4986G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4986G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4986G>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3121G>T
  hgvsp: ENSP00000353508.4:p.Ala1041Ser
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3109G>T
  hgvsp: ENSP00000392164.1:p.Ala1037Ser
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5169
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala1041Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-210560022-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560022
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560022
    reference: chr 2
allele count: 1
allele frequency: 8.281436332317477e-6
allele num: 120752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4979A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1244A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3128A>G
  hgvsp: ENSP00000353508.4:p.Gln1043Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3116A>G
  hgvsp: ENSP00000392164.1:p.Gln1039Arg
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4979A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4979A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4979A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4979A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5167
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34899
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1043Arg
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-210560030-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560030
    reference: chr 2
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4971C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3124C>A
  hgvsp: ENSP00000392164.1:p.Leu1042Ile
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3136C>A
  hgvsp: ENSP00000353508.4:p.Leu1046Ile
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4971C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4971C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4971C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1236C>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4971C>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu1046Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

2-210560030-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560030
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560030
    reference: chr 2
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3136C>G
  hgvsp: ENSP00000353508.4:p.Leu1046Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1236C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3124C>G
  hgvsp: ENSP00000392164.1:p.Leu1042Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4971C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4971C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4971C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4971C>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4971C>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8877
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1046Val
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-210560044-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560044
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560044
    reference: chr 2
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4957T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3138T>C
  hgvsp: ENST00000447185.1:c.3138T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1222T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3150T>C
  hgvsp: ENST00000360351.4:c.3150T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4957T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4957T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4957T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4957T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile1050Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-210560063-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560063
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560063
    reference: chr 2
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3169G>A
  hgvsp: ENSP00000353508.4:p.Ala1057Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1203G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4938G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4938G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4938G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3157G>A
  hgvsp: ENSP00000392164.1:p.Ala1053Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4938G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4938G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8818
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34881
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala1057Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

2-210560064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560064
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560064
    reference: chr 2
allele count: 1
allele frequency: 8.285553309249991e-6
allele num: 120692
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3170C>T
  hgvsp: ENSP00000353508.4:p.Ala1057Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4937C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4937C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4937C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4937C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1202C>T
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3158C>T
  hgvsp: ENSP00000392164.1:p.Ala1053Val
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4937C>T
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1057Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

2-210560066-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560066
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560066
    reference: chr 2
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4935T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3160T>A
  hgvsp: ENSP00000392164.1:p.Ser1054Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4935T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4935T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4935T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4935T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3172T>A
  hgvsp: ENSP00000353508.4:p.Ser1058Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1200T>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8816
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser1058Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

2-210560071-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560071
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560071
    reference: chr 2
allele count: 4
allele frequency: 3.315484972564362e-5
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4930G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4930G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3177G>A
  hgvsp: ENST00000360351.4:c.3177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4930G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4930G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3165G>A
  hgvsp: ENST00000447185.1:c.3165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1195G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4930G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24848
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5167
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8791
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly1059Gly
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

2-210560075-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560075
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560075
    reference: chr 2
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4926A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4926A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3169A>G
  hgvsp: ENSP00000392164.1:p.Asn1057Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4926A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1191A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3181A>G
  hgvsp: ENSP00000353508.4:p.Asn1061Asp
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4926A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4926A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn1061Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-210560079-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560079
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560079
    reference: chr 2
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4922T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1187T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4922T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4922T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3173T>A
  hgvsp: ENSP00000392164.1:p.Ile1058Lys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4922T>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3185T>A
  hgvsp: ENSP00000353508.4:p.Ile1062Lys
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4922T>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5163
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1062Lys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-210560079-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560079
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560079
    reference: chr 2
allele count: 1
allele frequency: 8.290911502810618e-6
allele num: 120614
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3185T>C
  hgvsp: ENSP00000353508.4:p.Ile1062Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4922T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4922T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4922T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1187T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3173T>C
  hgvsp: ENSP00000392164.1:p.Ile1058Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4922T>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4922T>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile1062Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

2-210560080-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560080
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560080
    reference: chr 2
allele count: 3
allele frequency: 2.487603442843165e-5
allele num: 120598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3174A>G
  hgvsp: ENSP00000392164.1:p.Ile1058Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4921A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1186A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4921A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4921A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4921A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3186A>G
  hgvsp: ENSP00000353508.4:p.Ile1062Met
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4921A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34169
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile1062Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

2-210560082-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560082
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560082
    reference: chr 2
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3188A>G
  hgvsp: ENSP00000353508.4:p.Asp1063Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4919A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3176A>G
  hgvsp: ENSP00000392164.1:p.Asp1059Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1184A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4919A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4919A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4919A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4919A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5160
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8752
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp1063Gly
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

2-210560098-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560098
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560098
    reference: chr 2
allele count: 5
allele frequency: 4.149377593360996e-5
allele num: 120500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3192A>G
  hgvsp: ENST00000447185.1:c.3192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3204A>G
  hgvsp: ENST00000360351.4:c.3204A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4903A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1168A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4903A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4903A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4903A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4903A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12687
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1068Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-210560100-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560100
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560100
    reference: chr 2
allele count: 2
allele frequency: 1.659723490066555e-5
allele num: 120502
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4901A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4901A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4901A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3206A>G
  hgvsp: ENSP00000353508.4:p.Glu1069Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3194A>G
  hgvsp: ENSP00000392164.1:p.Glu1065Gly
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1166A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4901A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4901A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu1069Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ

2-210560114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560114
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560114
    reference: chr 2
allele count: 6
allele frequency: 4.984547901505333e-5
allele num: 120372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1152G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3220G>A
  hgvsp: ENSP00000353508.4:p.Ala1074Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3208G>A
  hgvsp: ENSP00000392164.1:p.Ala1070Thr
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4887G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4887G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4887G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4887G>A
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4887G>A
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala1074Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-210560114-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560114
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560114
    reference: chr 2
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3208G>C
  hgvsp: ENSP00000392164.1:p.Ala1070Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4887G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1152G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4887G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3220G>C
  hgvsp: ENSP00000353508.4:p.Ala1074Pro
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4887G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4887G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4887G>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2047
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1074Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

2-210560117-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560117
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560117
    reference: chr 2
allele count: 1
allele frequency: 8.307165761185599e-6
allele num: 120378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4884A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4884A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3223A>G
  hgvsp: ENSP00000353508.4:p.Thr1075Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3211A>G
  hgvsp: ENSP00000392164.1:p.Thr1071Ala
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1149A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4884A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4884A>G
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4884A>G
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8608
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr1075Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD

2-210560123-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 210560123
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 210560123
    reference: chr 2
allele count: 6
allele frequency: 4.985707638104102e-5
allele num: 120344
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000353508
  ensembl transcript: ENST00000360351
  gene symbol: MAP2
  hgvsc: ENST00000360351.4:c.3229G>C
  hgvsp: ENSP00000353508.4:p.Asp1077His
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000388824
  ensembl transcript: ENST00000452717
  gene symbol: MAP2
  hgvsc: ENST00000452717.1:c.233-4878G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000471619
  gene symbol: MAP2
  hgvsc: ENST00000471619.1:n.407-4878G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000199940
  ensembl transcript: ENST00000199940
  gene symbol: MAP2
  hgvsc: ENST00000199940.6:c.455-4878G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000392164
  ensembl transcript: ENST00000447185
  gene symbol: MAP2
  hgvsc: ENST00000447185.1:c.3217G>C
  hgvsp: ENSP00000392164.1:p.Asp1073His
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl transcript: ENST00000482864
  gene symbol: MAP2
  hgvsc: ENST00000482864.1:n.357-1143G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000376032
  ensembl transcript: ENST00000392194
  gene symbol: MAP2
  hgvsc: ENST00000392194.1:c.455-4878G>C
  variant of: http://identifiers.org/hgnc/6839
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000078018
  ensembl protein: ENSP00000355290
  ensembl transcript: ENST00000361559
  gene symbol: MAP2
  hgvsc: ENST00000361559.4:c.455-4878G>C
  variant of: http://identifiers.org/hgnc/6839
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp1077His
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10068
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3100
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

DP
type: SiteQuality
SIO_000300: 2.041812e6

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-1

FS
type: SiteQuality
SIO_000300: 2.412e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 8144
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.491e0

MQRankSum
type: SiteQuality
SIO_000300: -2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.712e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 2.041744e6

QD
type: SiteQuality
SIO_000300: 1.974e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818622696411251e-4
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.791e0

DP
type: SiteQuality
SIO_000300: 2.04195e6

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201995312218282e-4
allele num: 66556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.093e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.297e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 2.042358e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.701202949165696e-5
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.04199e6

FS
type: SiteQuality
SIO_000300: 1.206e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.923e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 1.648e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2350
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GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 2.0419e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.778e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.748e0

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.507211538461539e-5
allele num: 66560
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.778e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.0419e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

South Asian
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allele num: 16496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.005e1

MQ
type: SiteQuality
SIO_000300: 5.801e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.041713e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.929e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.69e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 9.379999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.511793515819838e-5
allele num: 66562
num of homozygotes: 0

African
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allele count: 0
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Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
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Other
type: Population
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South Asian
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
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FS
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502268425322237e-5
allele num: 66566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.0421e6

VQSLOD
type: SiteQuality
SIO_000300: -3.699e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 2.042139e6

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

FS
type: SiteQuality
SIO_000300: 5.287e0

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.032e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.145e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.005e1

DP
type: SiteQuality
SIO_000300: 2.042473e6

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29800
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10073
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variant carriers: 8

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 294
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.201814740257789e-4
allele num: 66566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

FS
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

DP
type: SiteQuality
SIO_000300: 2.042719e6

GenotypeQuality
all individuals: 10070
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1611
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 29820
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.510439510920179e-5
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 1.201e0

DP
type: SiteQuality
SIO_000300: 2.04293e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.432e1

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10084
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.304097080379671e-4
allele num: 66584
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.497e1

DP
type: SiteQuality
SIO_000300: 2.045143e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2352
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variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.298e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 2.04408e6

VQSLOD
type: SiteQuality
SIO_000300: -2.591e0

QD
type: SiteQuality
SIO_000300: 3.321e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 9.545e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 255
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 10337
bin: 9.75e1
variant carriers: 481

GenotypeQuality
all individuals: 1364
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 466
allele frequency: 4.511132623426912e-2
allele num: 10330
num of homozygotes: 13

Latino
type: Population
allele count: 22
allele frequency: 1.905091790786283e-3
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505722267279445e-5
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

QD
type: SiteQuality
SIO_000300: 1.462e1

VQSLOD
type: SiteQuality
SIO_000300: 6.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

DP
type: SiteQuality
SIO_000300: 2.06041e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 3078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 3358
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 8170
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2334
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GenotypeQuality
all individuals: 30107
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.498e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.018e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.299e1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 2.043012e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9975
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.743e0

DP
type: SiteQuality
SIO_000300: 2.044878e6

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9975
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

FS
type: SiteQuality
SIO_000300: 1.743e0

DP
type: SiteQuality
SIO_000300: 2.044878e6

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.267e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1368
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.84402247626429e-4
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005530175522962e-5
allele num: 66544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.4357e2

DP
type: SiteQuality
SIO_000300: 2.050345e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.701e2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.57e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeQuality
all individuals: 30317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9980
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3093
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 2.046609e6

FS
type: SiteQuality
SIO_000300: 2.078e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9982
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2334
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8187
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.046855e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.901e1

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
all individuals: 30371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8188
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9982
bin: 9.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.002220821704031e-5
allele num: 66642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.047048e6

QD
type: SiteQuality
SIO_000300: 1.51e1

FS
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30369
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.047002e6

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.748e0

FS
type: SiteQuality
SIO_000300: 1.3364e1

VQSLOD
type: SiteQuality
SIO_000300: -2.051e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3090
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9984
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 30347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

FS
type: SiteQuality
SIO_000300: 7.491e0

DP
type: SiteQuality
SIO_000300: 2.047485e6

QD
type: SiteQuality
SIO_000300: 1.299e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 1436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29958
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2173
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7964
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 116
allele frequency: 1.003633846686278e-2
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.874015748031496e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2387
allele frequency: 3.581287883334334e-2
allele num: 66652
num of homozygotes: 45

African
type: Population
allele count: 67
allele frequency: 6.463438163225931e-3
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 21
allele frequency: 2.317880794701987e-2
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 287
allele frequency: 4.340592861464005e-2
allele num: 6612
num of homozygotes: 4

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

DP
type: SiteQuality
SIO_000300: 2.182041e6

GenotypeQuality
all individuals: 3075
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8359
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.912e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 4.879e0

QD
type: SiteQuality
SIO_000300: 1.445e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 2.032532e6

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8358
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.281e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

DP
type: SiteQuality
SIO_000300: 2.032579e6

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.072e0

FS
type: SiteQuality
SIO_000300: 1.5546e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.613e1

DP
type: SiteQuality
SIO_000300: 2.03283e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.669e1

QD
type: SiteQuality
SIO_000300: 8.83e0

VQSLOD
type: SiteQuality
SIO_000300: -2.339e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.033119e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

GenotypeQuality
all individuals: 2298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.19994000299985e-4
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.033571e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 7.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

GenotypeQuality
all individuals: 3372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 31459
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.628345850182939e-4
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

QD
type: SiteQuality
SIO_000300: 1.378e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 3.215e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.24e-1

DP
type: SiteQuality
SIO_000300: 2.033266e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9077
bin: 9.75e1
variant carriers: 8

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847309743092584e-4
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.194e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.033155e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.229e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 2294
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.500060002400096e-4
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.374e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.54e0

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

DP
type: SiteQuality
SIO_000300: 2.033363e6

FS
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.355e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -4.615e-1

FS
type: SiteQuality
SIO_000300: 9.234999999999999e0

DP
type: SiteQuality
SIO_000300: 2.032542e6

QD
type: SiteQuality
SIO_000300: 1.227e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.445e0

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 8354
bin: 6.75e1
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GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.041e0

FS
type: SiteQuality
SIO_000300: 5.794e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

QD
type: SiteQuality
SIO_000300: 1.275e1

DP
type: SiteQuality
SIO_000300: 2.03164e6

GenotypeQuality
all individuals: 3059
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.816955684007707e-4
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.339e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 1.768e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

DP
type: SiteQuality
SIO_000300: 2.028299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
all individuals: 3360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.028299e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.31e0

FS
type: SiteQuality
SIO_000300: 1.768e0

QD
type: SiteQuality
SIO_000300: 1.339e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002732486562772e-5
allele num: 66606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.026609e6

MQRankSum
type: SiteQuality
SIO_000300: -2.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 2.452e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.343e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

GenotypeQuality
all individuals: 313
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9072
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 30624
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.025278e6

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

FS
type: SiteQuality
SIO_000300: 5.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.353e0

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

QD
type: SiteQuality
SIO_000300: 1.928e1

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15179
bin: 9.75e1
variant carriers: 11255

GenotypeQuality
all individuals: 7265
bin: 6.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2405
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 779
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 926
bin: 9.25e1
variant carriers: 15

African
type: Population
allele count: 1579
allele frequency: 1.521487762574677e-1
allele num: 10378
num of homozygotes: 104

South Asian
type: Population
allele count: 2381
allele frequency: 1.449531230975283e-1
allele num: 16426
num of homozygotes: 190

East Asian
type: Population
allele count: 1996
allele frequency: 2.316620241411328e-1
allele num: 8616
num of homozygotes: 245

Other
type: Population
allele count: 81
allele frequency: 8.960176991150443e-2
allele num: 904
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 4817
allele frequency: 7.236209590193486e-2
allele num: 66568
num of homozygotes: 178

Latino
type: Population
allele count: 701
allele frequency: 6.059820193637621e-2
allele num: 11568
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 565
allele frequency: 8.547655068078669e-2
allele num: 6610
num of homozygotes: 30

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

DP
type: SiteQuality
SIO_000300: 2.583705e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.029e0

GenotypeQuality
all individuals: 2053
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 1111
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 5201
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
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GenotypeQuality
all individuals: 34437
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.459010722933241e-4
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

FS
type: SiteQuality
SIO_000300: 1.723e0

VQSLOD
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 1.912696e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
SIO_000300: 1.648e1

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5205
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variant carriers: 21

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 34520
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 19
allele frequency: 1.835039598222909e-3
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.91188e6

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.393e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

GenotypeQuality
all individuals: 2050
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 289
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 201
bin: 4.75e1
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GenotypeQuality
all individuals: 241
bin: 3.75e1
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GenotypeQuality
all individuals: 5181
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 4.25e1
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GenotypeQuality
all individuals: 8860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3203
bin: 7.75e1
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GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.245e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.90937e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

FS
type: SiteQuality
SIO_000300: 6.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

QD
type: SiteQuality
SIO_000300: 1.114e1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 3189
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GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 246
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GenotypeQuality
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GenotypeQuality
all individuals: 5180
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.103e0

QD
type: SiteQuality
SIO_000300: 1.013e1

FS
type: SiteQuality
SIO_000300: 3.189e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

DP
type: SiteQuality
SIO_000300: 1.90757e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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GenotypeQuality
all individuals: 3188
bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.136e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.23e-2

BaseQRankSum
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FS
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QD
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SIO_000300: 1.189e1

MQRankSum
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SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 9
allele frequency: 5.511328842620943e-4
allele num: 16330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 2.448e0

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

InbreedingCoeff
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.908241e6

BaseQRankSum
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SIO_000300: 8.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 12
allele frequency: 1.037882719252724e-3
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908478e6

VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
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SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: -1.69e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.223840411210378e-4
allele num: 16342
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.31e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.595e1

DP
type: SiteQuality
SIO_000300: 1.907461e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 3
allele frequency: 4.53857791225416e-4
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.136e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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QD
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.908064e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

Other
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allele count: 0
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allele num: 906
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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QD
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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African
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allele frequency: 9.699321047526673e-5
allele num: 10310
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
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Latino
type: Population
allele count: 0
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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MQ
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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African
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Other
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South Asian
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allele count: 1
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European (Non-Finnish)
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allele count: 0
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allele num: 66402
num of homozygotes: 0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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African
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European (Finnish)
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8870
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

DP
type: SiteQuality
SIO_000300: 1.907924e6

FS
type: SiteQuality
SIO_000300: 2.105e0

QD
type: SiteQuality
SIO_000300: 1.731e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.639e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 1.905949e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5164
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140243153628883e-5
allele num: 16286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.176e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.905998e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506250941406838e-5
allele num: 66390
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.77e-1

DP
type: SiteQuality
SIO_000300: 1.905357e6

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.485e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 2049
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147792942333702e-5
allele num: 16266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.520523175215478e-5
allele num: 66364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

FS
type: SiteQuality
SIO_000300: 1.775e0

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.339e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.004e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 1.903546e6

GenotypeQuality
all individuals: 2923
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.154603643525357e-5
allele num: 16248
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.901655e6

MQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 5.278e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 3.375e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.900078e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.375e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.03e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.899164e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506704836522525e-5
allele num: 66370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.087e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

FS
type: SiteQuality
SIO_000300: 9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.451e1

MQRankSum
type: SiteQuality
SIO_000300: -1.549e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

DP
type: SiteQuality
SIO_000300: 1.899003e6

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5161
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.636068613815484e-4
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 1.889769e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 1104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5158
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33431
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014681498899641e-5
allele num: 66342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.497e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 1.888684e6

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.045953443492944e-5
allele num: 66328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.884527e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.894e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
all individuals: 220
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8593
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66328
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.884527e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.894e0

GenotypeQuality
all individuals: 563
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2894
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5152
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.268e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

DP
type: SiteQuality
SIO_000300: 1.883706e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.651e0

QD
type: SiteQuality
SIO_000300: 9.01e0

VQSLOD
type: SiteQuality
SIO_000300: -2.704e-1