4-1940143-CTTTTTTTTTTTTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940143
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940129
    reference: chr 4
allele count: 15
allele frequency: 1.716247139588101e-3
allele num: 8740
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12796
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12661
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5531
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1026
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 3.311258278145695e-3
  allele num: 302
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 96
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.336898395721925e-3
  allele num: 748
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CTTTTTTTTTTTTTT
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

4-1940143-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940143
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940145
    reference: chr 4
allele count: 36
allele frequency: 4.118993135011442e-3
allele num: 8740
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3178_160+3179dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1214_457-1213dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-11_1675-10dupTT
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

4-1940143-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940143
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940142
    reference: chr 4
allele count: 94
allele frequency: 1.075514874141876e-2
allele num: 8740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3179delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1213delT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-10delT
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 7.5e0
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.5e0
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: CT
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

4-1940143-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940143
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940141
    reference: chr 4
allele count: 33
allele frequency: 3.775743707093822e-3
allele num: 8740
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5652
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13344
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 12796
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 12661
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5531
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 1
  allele frequency: 9.746588693957114e-4
  allele num: 1026
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 19
  allele frequency: 4.812563323201621e-3
  allele num: 3948
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 96
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.336898395721925e-3
  allele num: 748
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
reference allele: CTT
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

4-1940149-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940149
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940149
    reference: chr 4
allele count: 3
allele frequency: 2.740226525392766e-4
allele num: 10948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1232T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3160T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-29T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

4-1940150-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940150
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940150
    reference: chr 4
allele count: 1
allele frequency: 8.722958827634333e-5
allele num: 11464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1231T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3161T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-28T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-1940153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940153
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940153
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 12458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1228T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-25T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3164T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

4-1940153-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940153
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940154
    reference: chr 4
allele count: 18
allele frequency: 1.444854711831755e-3
allele num: 12458
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1228_457-1227insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3164_160+3165insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-25_1675-24insC
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6302
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-1940154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940154
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940154
    reference: chr 4
allele count: 1
allele frequency: 7.862871520679352e-5
allele num: 12718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1227T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3165T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-24T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD

4-1940157-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940157
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940157
    reference: chr 4
allele count: 14
allele frequency: 1.014639802869981e-3
allele num: 13798
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3168T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1224T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-21T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7795
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-1940158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940158
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940158
    reference: chr 4
allele count: 1
allele frequency: 7.010656197420079e-5
allele num: 14264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3169T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1223T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-20T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

4-1940168-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940168
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940169
    reference: chr 4
allele count: 105
allele frequency: 1.330023053732931e-3
allele num: 78946
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1210dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3182dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-7dupA
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

4-1940168-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940168
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940167
    reference: chr 4
allele count: 11
allele frequency: 1.393357484863071e-4
allele num: 78946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1210delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3182delA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-7delA
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19175
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8708
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

4-1940169-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940169
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940169
    reference: chr 4
allele count: 7
allele frequency: 8.761828468432383e-5
allele num: 79892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3180A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1212A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-9A>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 13418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16592
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

4-1940170-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940170
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940170
    reference: chr 4
allele count: 7
allele frequency: 7.582486622327174e-5
allele num: 92318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1211A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3181A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-8A>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1675-8A>T
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

4-1940171-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940171
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940171
    reference: chr 4
allele count: 7
allele frequency: 7.161125319693094e-5
allele num: 97750
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3182A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1675-7A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1210A>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9819
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1675-7A>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-1940189-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940189
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940189
    reference: chr 4
allele count: 1
allele frequency: 8.37058242512514e-6
allele num: 119466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1686C>A
  hgvsp: ENST00000312087.6:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1686C>A
  hgvsp: ENST00000420906.2:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1192C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1686C>A
  hgvsp: ENST00000508803.1:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1686C>A
  hgvsp: ENST00000382891.5:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1686C>A
  hgvsp: ENST00000503128.1:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1686C>A
  hgvsp: ENST00000382895.3:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1686C>A
  hgvsp: ENST00000514045.1:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1686C>A
  hgvsp: ENST00000398261.1:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1686C>A
  hgvsp: ENST00000382892.2:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3200C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1686C>A
  hgvsp: ENST00000353275.5:c.1686C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile562Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-1940213-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940213
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940213
    reference: chr 4
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1710C>T
  hgvsp: ENST00000514045.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1710C>T
  hgvsp: ENST00000508803.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1710C>T
  hgvsp: ENST00000398261.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1168C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1710C>T
  hgvsp: ENST00000382892.2:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1710C>T
  hgvsp: ENST00000420906.2:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1710C>T
  hgvsp: ENST00000382895.3:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1710C>T
  hgvsp: ENST00000382891.5:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1710C>T
  hgvsp: ENST00000312087.6:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1710C>T
  hgvsp: ENST00000503128.1:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1710C>T
  hgvsp: ENST00000353275.5:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3224C>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser570Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

4-1940215-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940215
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940215
    reference: chr 4
allele count: 1
allele frequency: 8.271024945411235e-6
allele num: 120904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1712C>G
  hgvsp: ENSP00000399251.2:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1712C>G
  hgvsp: ENSP00000381311.1:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1712C>G
  hgvsp: ENSP00000372347.5:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1712C>G
  hgvsp: ENSP00000372351.3:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1712C>G
  hgvsp: ENSP00000308780.6:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1712C>G
  hgvsp: ENSP00000425761.1:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1712C>G
  hgvsp: ENSP00000423972.1:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1166C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1712C>G
  hgvsp: ENSP00000372348.2:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1712C>G
  hgvsp: ENSP00000329167.5:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3226C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1712C>G
  hgvsp: ENSP00000421681.1:p.Ser571Cys
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser571Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-1940220-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940220
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940220
    reference: chr 4
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1717A>G
  hgvsp: ENSP00000421681.1:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1717A>G
  hgvsp: ENSP00000372348.2:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1717A>G
  hgvsp: ENSP00000423972.1:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3231A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1717A>G
  hgvsp: ENSP00000308780.6:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1717A>G
  hgvsp: ENSP00000329167.5:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1717A>G
  hgvsp: ENSP00000372351.3:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1717A>G
  hgvsp: ENSP00000425761.1:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1717A>G
  hgvsp: ENSP00000399251.2:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1717A>G
  hgvsp: ENSP00000381311.1:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1717A>G
  hgvsp: ENSP00000372347.5:p.Lys573Glu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1161A>G
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys573Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-1940221-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940221
    reference: chr 4
allele count: 1
allele frequency: 8.265282507356101e-6
allele num: 120988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1718A>C
  hgvsp: ENSP00000425761.1:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1718A>C
  hgvsp: ENSP00000372347.5:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1718A>C
  hgvsp: ENSP00000329167.5:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1160A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3232A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1718A>C
  hgvsp: ENSP00000381311.1:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1718A>C
  hgvsp: ENSP00000423972.1:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1718A>C
  hgvsp: ENSP00000372351.3:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1718A>C
  hgvsp: ENSP00000372348.2:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1718A>C
  hgvsp: ENSP00000308780.6:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1718A>C
  hgvsp: ENSP00000399251.2:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1718A>C
  hgvsp: ENSP00000421681.1:p.Lys573Thr
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys573Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-1940222-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940222
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940222
    reference: chr 4
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1719G>A
  hgvsp: ENST00000420906.2:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1719G>A
  hgvsp: ENST00000398261.1:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1719G>A
  hgvsp: ENST00000312087.6:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1719G>A
  hgvsp: ENST00000508803.1:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1719G>A
  hgvsp: ENST00000382891.5:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1719G>A
  hgvsp: ENST00000514045.1:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1719G>A
  hgvsp: ENST00000382892.2:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1719G>A
  hgvsp: ENST00000353275.5:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1719G>A
  hgvsp: ENST00000382895.3:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1719G>A
  hgvsp: ENST00000503128.1:c.1719G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1159G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3233G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys573Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-1940223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940223
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940223
    reference: chr 4
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1720G>A
  hgvsp: ENSP00000423972.1:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1720G>A
  hgvsp: ENSP00000425761.1:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1720G>A
  hgvsp: ENSP00000329167.5:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1720G>A
  hgvsp: ENSP00000372347.5:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1720G>A
  hgvsp: ENSP00000372348.2:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1720G>A
  hgvsp: ENSP00000372351.3:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1158G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1720G>A
  hgvsp: ENSP00000381311.1:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1720G>A
  hgvsp: ENSP00000308780.6:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1720G>A
  hgvsp: ENSP00000399251.2:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1720G>A
  hgvsp: ENSP00000421681.1:p.Ala574Thr
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3234G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala574Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/4-1940225-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940225
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940225
    reference: chr 4
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1722C>A
  hgvsp: ENST00000312087.6:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1722C>A
  hgvsp: ENST00000514045.1:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1722C>A
  hgvsp: ENST00000398261.1:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1722C>A
  hgvsp: ENST00000382891.5:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1722C>A
  hgvsp: ENST00000508803.1:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1722C>A
  hgvsp: ENST00000382895.3:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1156C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1722C>A
  hgvsp: ENST00000420906.2:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1722C>A
  hgvsp: ENST00000382892.2:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1722C>A
  hgvsp: ENST00000503128.1:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3236C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1722C>A
  hgvsp: ENST00000353275.5:c.1722C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala574Ala
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

4-1940235-G-GCCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940235
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940238
    reference: chr 4
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: GCCT
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1737_1739dupCTC
  hgvsp: ENSP00000372351.3:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1737_1739dupCTC
  hgvsp: ENSP00000421681.1:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1737_1739dupCTC
  hgvsp: ENSP00000329167.5:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1737_1739dupCTC
  hgvsp: ENSP00000381311.1:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3251_160+3253dupCTC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1737_1739dupCTC
  hgvsp: ENSP00000399251.2:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1737_1739dupCTC
  hgvsp: ENSP00000423972.1:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1141_457-1139dupCTC
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1737_1739dupCTC
  hgvsp: ENSP00000308780.6:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1737_1739dupCTC
  hgvsp: ENSP00000372347.5:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1737_1739dupCTC
  hgvsp: ENSP00000425761.1:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1737_1739dupCTC
  hgvsp: ENSP00000372348.2:p.Ser580dup
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser580dup
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

4-1940236-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940236
    reference: chr 4
allele count: 30
allele frequency: 2.478847170809096e-4
allele num: 121024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1145C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1733C>G
  hgvsp: ENSP00000372348.2:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1733C>G
  hgvsp: ENSP00000308780.6:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1733C>G
  hgvsp: ENSP00000425761.1:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1733C>G
  hgvsp: ENSP00000423972.1:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1733C>G
  hgvsp: ENSP00000372347.5:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1733C>G
  hgvsp: ENSP00000381311.1:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1733C>G
  hgvsp: ENSP00000421681.1:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1733C>G
  hgvsp: ENSP00000399251.2:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1733C>G
  hgvsp: ENSP00000329167.5:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1733C>G
  hgvsp: ENSP00000372351.3:p.Ala578Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3247C>G
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala578Gly
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-1940236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940236
    reference: chr 4
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1733C>T
  hgvsp: ENSP00000381311.1:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1145C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1733C>T
  hgvsp: ENSP00000372347.5:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3247C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1733C>T
  hgvsp: ENSP00000425761.1:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1733C>T
  hgvsp: ENSP00000399251.2:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1733C>T
  hgvsp: ENSP00000308780.6:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1733C>T
  hgvsp: ENSP00000421681.1:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1733C>T
  hgvsp: ENSP00000423972.1:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1733C>T
  hgvsp: ENSP00000372348.2:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1733C>T
  hgvsp: ENSP00000329167.5:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1733C>T
  hgvsp: ENSP00000372351.3:p.Ala578Val
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala578Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

4-1940242-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940242
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940242
    reference: chr 4
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1739C>T
  hgvsp: ENSP00000423972.1:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1739C>T
  hgvsp: ENSP00000425761.1:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1739C>T
  hgvsp: ENSP00000372351.3:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1139C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1739C>T
  hgvsp: ENSP00000421681.1:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1739C>T
  hgvsp: ENSP00000372347.5:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1739C>T
  hgvsp: ENSP00000381311.1:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1739C>T
  hgvsp: ENSP00000308780.6:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3253C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1739C>T
  hgvsp: ENSP00000399251.2:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1739C>T
  hgvsp: ENSP00000329167.5:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1739C>T
  hgvsp: ENSP00000372348.2:p.Ser580Leu
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser580Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

4-1940243-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940243
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940243
    reference: chr 4
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1740G>A
  hgvsp: ENST00000353275.5:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1740G>A
  hgvsp: ENST00000382895.3:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1740G>A
  hgvsp: ENST00000312087.6:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1740G>A
  hgvsp: ENST00000508803.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1740G>A
  hgvsp: ENST00000514045.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1740G>A
  hgvsp: ENST00000503128.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1740G>A
  hgvsp: ENST00000382892.2:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1740G>A
  hgvsp: ENST00000398261.1:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1740G>A
  hgvsp: ENST00000420906.2:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1740G>A
  hgvsp: ENST00000382891.5:c.1740G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1138G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3254G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser580Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-1940267-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940267
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940267
    reference: chr 4
allele count: 5
allele frequency: 4.135854550267176e-5
allele num: 120894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3278G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1114G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+8G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1756+8G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

4-1940272-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940272
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940272
    reference: chr 4
allele count: 2
allele frequency: 1.654998924250699e-5
allele num: 120846
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3283G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1109G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+13G>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

4-1940273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940273
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940273
    reference: chr 4
allele count: 1
allele frequency: 8.275405494869249e-6
allele num: 120840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3284C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1108C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+14C>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

4-1940274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940274
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940274
    reference: chr 4
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1107G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3285G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+15G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

4-1940274-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940274
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940274
    reference: chr 4
allele count: 7
allele frequency: 5.792687972724715e-5
allele num: 120842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1107G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3285G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+15G>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

4-1940300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940300
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940300
    reference: chr 4
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3311C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1081C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+41C>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

4-1940301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940301
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940301
    reference: chr 4
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3312C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1080C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+42C>T
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35923
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS

4-1940302-CAGGCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940302
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940297
    reference: chr 4
allele count: 1
allele frequency: 8.318221896887321e-6
allele num: 120218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3314_160+3318delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1078_457-1074delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+44_1756+48delAGGCT
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: CAGGCT
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

4-1940308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1940308
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1940308
    reference: chr 4
allele count: 3
allele frequency: 2.510418235678064e-5
allele num: 119502
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+3319G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-1073G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1756+49G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10947
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-1941339-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941339
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941339
    reference: chr 4
allele count: 5
allele frequency: 4.256188498076203e-5
allele num: 117476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4350G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.332G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-42G>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18343
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

4-1941348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941348
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941348
    reference: chr 4
allele count: 1
allele frequency: 8.485794779539051e-6
allele num: 117844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.341T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4359T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-33T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-1941358-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941358
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941358
    reference: chr 4
allele count: 2
allele frequency: 1.687080338765732e-5
allele num: 118548
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4369T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.351T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-23T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

4-1941358-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941358
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941358
    reference: chr 4
allele count: 1
allele frequency: 8.43540169382866e-6
allele num: 118548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4369T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.351T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-23T>A
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-1941359-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941359
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941359
    reference: chr 4
allele count: 2
allele frequency: 1.686966496845373e-5
allele num: 118556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4370A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.352A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-22A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-22A>G
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-1941362-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941362
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941362
    reference: chr 4
allele count: 1
allele frequency: 8.41226845231085e-6
allele num: 118874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.457-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.355A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4373A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1757-19A>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3881
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-1941384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941384
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941384
    reference: chr 4
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1760C>G
  hgvsp: ENSP00000372348.2:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1760C>G
  hgvsp: ENSP00000423972.1:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1760C>G
  hgvsp: ENSP00000421681.1:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1760C>G
  hgvsp: ENSP00000381311.1:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1760C>G
  hgvsp: ENSP00000308780.6:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1760C>G
  hgvsp: ENSP00000425761.1:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1760C>G
  hgvsp: ENSP00000372351.3:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.377C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4395C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1760C>G
  hgvsp: ENSP00000372347.5:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.460C>G
  hgvsp: ENSP00000424482.1:p.Arg154Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1760C>G
  hgvsp: ENSP00000329167.5:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1760C>G
  hgvsp: ENSP00000399251.2:p.Thr587Arg
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr587Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-1941384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941384
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941384
    reference: chr 4
allele count: 4
allele frequency: 3.314770617873243e-5
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1760C>T
  hgvsp: ENSP00000329167.5:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1760C>T
  hgvsp: ENSP00000372348.2:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1760C>T
  hgvsp: ENSP00000421681.1:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4395C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1760C>T
  hgvsp: ENSP00000372347.5:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1760C>T
  hgvsp: ENSP00000425761.1:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.460C>T
  hgvsp: ENSP00000424482.1:p.Arg154Ter
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.377C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1760C>T
  hgvsp: ENSP00000372351.3:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1760C>T
  hgvsp: ENSP00000308780.6:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1760C>T
  hgvsp: ENSP00000381311.1:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1760C>T
  hgvsp: ENSP00000423972.1:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1760C>T
  hgvsp: ENSP00000399251.2:p.Thr587Met
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8678
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg154Ter
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

4-1941385-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941385
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941385
    reference: chr 4
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.378G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1761G>A
  hgvsp: ENST00000503128.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1761G>A
  hgvsp: ENST00000382891.5:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1761G>A
  hgvsp: ENST00000382895.3:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1761G>A
  hgvsp: ENST00000420906.2:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1761G>A
  hgvsp: ENST00000382892.2:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1761G>A
  hgvsp: ENST00000398261.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1761G>A
  hgvsp: ENST00000312087.6:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.461G>A
  hgvsp: ENSP00000424482.1:p.Arg154Gln
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1761G>A
  hgvsp: ENST00000514045.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4396G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1761G>A
  hgvsp: ENST00000353275.5:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1761G>A
  hgvsp: ENST00000508803.1:c.1761G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg154Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-1941392-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941392
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941392
    reference: chr 4
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1768C>A
  hgvsp: ENSP00000372347.5:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1768C>A
  hgvsp: ENSP00000329167.5:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1768C>A
  hgvsp: ENSP00000425761.1:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1768C>A
  hgvsp: ENSP00000372351.3:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4403C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1768C>A
  hgvsp: ENSP00000423972.1:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1768C>A
  hgvsp: ENSP00000308780.6:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.385C>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.468C>A
  hgvsp: ENST00000511904.1:c.468C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.5C>A
  hgvsp: ENSP00000425094.1:p.Leu3Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1768C>A
  hgvsp: ENSP00000372348.2:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1768C>A
  hgvsp: ENSP00000399251.2:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1768C>A
  hgvsp: ENSP00000421681.1:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1768C>A
  hgvsp: ENSP00000381311.1:p.Leu590Met
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14744
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu590Met
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

4-1941393-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941393
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941393
    reference: chr 4
allele count: 1
allele frequency: 8.261595148791329e-6
allele num: 121042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.469T>G
  hgvsp: ENSP00000424482.1:p.Cys157Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1769T>G
  hgvsp: ENSP00000399251.2:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1769T>G
  hgvsp: ENSP00000372348.2:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1769T>G
  hgvsp: ENSP00000421681.1:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4404T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1769T>G
  hgvsp: ENSP00000372351.3:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.6T>G
  hgvsp: ENSP00000425094.1:p.Leu3Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1769T>G
  hgvsp: ENSP00000308780.6:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.386T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1769T>G
  hgvsp: ENSP00000425761.1:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1769T>G
  hgvsp: ENSP00000381311.1:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1769T>G
  hgvsp: ENSP00000423972.1:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1769T>G
  hgvsp: ENSP00000372347.5:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1769T>G
  hgvsp: ENSP00000329167.5:p.Leu590Arg
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu590Arg
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

4-1941403-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941403
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941403
    reference: chr 4
allele count: 2
allele frequency: 1.649783878311941e-5
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1779A>G
  hgvsp: ENST00000508803.1:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1779A>G
  hgvsp: ENST00000382891.5:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1779A>G
  hgvsp: ENST00000312087.6:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1779A>G
  hgvsp: ENST00000420906.2:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1779A>G
  hgvsp: ENST00000503128.1:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1779A>G
  hgvsp: ENST00000382895.3:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4414A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1779A>G
  hgvsp: ENST00000353275.5:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1779A>G
  hgvsp: ENST00000398261.1:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1779A>G
  hgvsp: ENST00000382892.2:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.479A>G
  hgvsp: ENSP00000424482.1:p.His160Arg
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.16A>G
  hgvsp: ENST00000514329.1:c.16A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.396A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1779A>G
  hgvsp: ENST00000514045.1:c.1779A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His160Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

4-1941421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941421
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941421
    reference: chr 4
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1797G>A
  hgvsp: ENST00000508803.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1797G>A
  hgvsp: ENST00000514045.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1797G>A
  hgvsp: ENST00000503128.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4432G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1797G>A
  hgvsp: ENST00000382891.5:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.414G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1797G>A
  hgvsp: ENST00000420906.2:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1797G>A
  hgvsp: ENST00000312087.6:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.34G>A
  hgvsp: ENST00000514329.1:c.34G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1797G>A
  hgvsp: ENST00000398261.1:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1797G>A
  hgvsp: ENST00000382895.3:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*5G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1797G>A
  hgvsp: ENST00000353275.5:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1797G>A
  hgvsp: ENST00000382892.2:c.1797G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys599Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

4-1941432-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941432
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941432
    reference: chr 4
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.45C>G
  hgvsp: ENSP00000425094.1:p.Ala16Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4443C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*16C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1808C>G
  hgvsp: ENSP00000399251.2:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1808C>G
  hgvsp: ENSP00000423972.1:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1808C>G
  hgvsp: ENSP00000308780.6:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1808C>G
  hgvsp: ENSP00000372347.5:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1808C>G
  hgvsp: ENSP00000425761.1:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1808C>G
  hgvsp: ENSP00000329167.5:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1808C>G
  hgvsp: ENSP00000372348.2:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1808C>G
  hgvsp: ENSP00000372351.3:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.425C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1808C>G
  hgvsp: ENSP00000421681.1:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1808C>G
  hgvsp: ENSP00000381311.1:p.Ala603Gly
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala603Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-1941437-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941437
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941437
    reference: chr 4
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1813A>G
  hgvsp: ENSP00000399251.2:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1813A>G
  hgvsp: ENSP00000372348.2:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1813A>G
  hgvsp: ENSP00000308780.6:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4448A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1813A>G
  hgvsp: ENSP00000381311.1:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.430A>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1813A>G
  hgvsp: ENSP00000372347.5:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1813A>G
  hgvsp: ENSP00000423972.1:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1813A>G
  hgvsp: ENSP00000329167.5:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.50A>G
  hgvsp: ENSP00000425094.1:p.Thr18Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1813A>G
  hgvsp: ENSP00000421681.1:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1813A>G
  hgvsp: ENSP00000425761.1:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1813A>G
  hgvsp: ENSP00000372351.3:p.Thr605Ala
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr605Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

4-1941439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941439
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941439
    reference: chr 4
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1815G>A
  hgvsp: ENST00000312087.6:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1815G>A
  hgvsp: ENST00000353275.5:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1815G>A
  hgvsp: ENST00000382891.5:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1815G>A
  hgvsp: ENST00000420906.2:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1815G>A
  hgvsp: ENST00000508803.1:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.52G>A
  hgvsp: ENST00000514329.1:c.52G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.432G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1815G>A
  hgvsp: ENST00000503128.1:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1815G>A
  hgvsp: ENST00000514045.1:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1815G>A
  hgvsp: ENST00000382895.3:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1815G>A
  hgvsp: ENST00000398261.1:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1815G>A
  hgvsp: ENST00000382892.2:c.1815G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*23G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4450G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr605Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

4-1941466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941466
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941466
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1842C>T
  hgvsp: ENST00000312087.6:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1842C>T
  hgvsp: ENST00000353275.5:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1842C>T
  hgvsp: ENST00000382895.3:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*50C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1842C>T
  hgvsp: ENST00000382892.2:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1842C>T
  hgvsp: ENST00000514045.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4477C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.79C>T
  hgvsp: ENST00000514329.1:c.79C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1842C>T
  hgvsp: ENST00000503128.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1842C>T
  hgvsp: ENST00000382891.5:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1842C>T
  hgvsp: ENST00000398261.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1842C>T
  hgvsp: ENST00000508803.1:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.459C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1842C>T
  hgvsp: ENST00000420906.2:c.1842C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser614Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-1941469-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941469
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941469
    reference: chr 4
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1845A>C
  hgvsp: ENSP00000381311.1:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1845A>C
  hgvsp: ENSP00000329167.5:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*53A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1845A>C
  hgvsp: ENSP00000372347.5:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.82A>C
  hgvsp: ENSP00000425094.1:p.Lys28Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1845A>C
  hgvsp: ENSP00000308780.6:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1845A>C
  hgvsp: ENSP00000399251.2:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1845A>C
  hgvsp: ENSP00000372348.2:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1845A>C
  hgvsp: ENSP00000423972.1:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1845A>C
  hgvsp: ENSP00000421681.1:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.462A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1845A>C
  hgvsp: ENSP00000425761.1:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4480A>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1845A>C
  hgvsp: ENSP00000372351.3:p.Lys615Asn
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys615Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

4-1941477-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941477
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941477
    reference: chr 4
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1853C>G
  hgvsp: ENSP00000381311.1:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1853C>G
  hgvsp: ENSP00000372347.5:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.90C>G
  hgvsp: ENSP00000425094.1:p.Ser31Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1853C>G
  hgvsp: ENSP00000308780.6:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1853C>G
  hgvsp: ENSP00000372348.2:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.470C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1853C>G
  hgvsp: ENSP00000421681.1:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1853C>G
  hgvsp: ENSP00000329167.5:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1853C>G
  hgvsp: ENSP00000425761.1:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1853C>G
  hgvsp: ENSP00000423972.1:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*61C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1853C>G
  hgvsp: ENSP00000372351.3:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4488C>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1853C>G
  hgvsp: ENSP00000399251.2:p.Ser618Cys
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser618Cys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

4-1941482-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941482
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941482
    reference: chr 4
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*66T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.95T>G
  hgvsp: ENSP00000425094.1:p.Ser33Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.4T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1858T>G
  hgvsp: ENSP00000425761.1:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1858T>G
  hgvsp: ENSP00000372347.5:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1858T>G
  hgvsp: ENSP00000423972.1:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1858T>G
  hgvsp: ENSP00000372348.2:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1858T>G
  hgvsp: ENSP00000421681.1:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1858T>G
  hgvsp: ENSP00000399251.2:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1858T>G
  hgvsp: ENSP00000308780.6:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1858T>G
  hgvsp: ENSP00000329167.5:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1858T>G
  hgvsp: ENSP00000372351.3:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1858T>G
  hgvsp: ENSP00000381311.1:p.Ser620Ala
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.475T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4493T>G
  variant of: http://identifiers.org/hgnc/12766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27258
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser620Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-1941509-AAAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941509
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941506
    reference: chr 4
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: stop_lost
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*7_*9delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: stop_lost
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*7_*9delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+16_27+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4532_160+4534delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+16_118+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+16_*89+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+16_498+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+16_1881+18delTAA
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: stop lost
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9029
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: AAAT
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-1941514-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941514
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941514
    reference: chr 4
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.1890A>T
  hgvsp: ENSP00000421681.1:p.Ter630TyrextTer1
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.1890A>T
  hgvsp: ENSP00000399251.2:p.Ter630TyrextTer1
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+9A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4525A>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+9A>T
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9020
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter630TyrextTer1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

4-1941515-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941515
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941515
    reference: chr 4
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4526T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*1T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*1T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+10T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-1941521-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941521
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941521
    reference: chr 4
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*7T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*7T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+16T>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4532T>A
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-1941521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941521
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941521
    reference: chr 4
allele count: 1
allele frequency: 8.253957772752034e-6
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*7T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*7T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+16T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4532T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

4-1941524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941524
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941524
    reference: chr 4
allele count: 9
allele frequency: 7.430279213381107e-5
allele num: 121126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4535C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+19C>T
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+19C>T
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4074
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-1941525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941525
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941525
    reference: chr 4
allele count: 2
allele frequency: 1.651391297167864e-5
allele num: 121110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4536G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*11G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*11G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+20G>A
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

4-1941527-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941527
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941527
    reference: chr 4
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*13T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372347
  ensembl transcript: ENST00000382891
  gene symbol: WHSC1
  hgvsc: ENST00000382891.5:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4538T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*13T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000502425
  gene symbol: WHSC1
  hgvsc: ENST00000502425.1:n.27+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425094
  ensembl transcript: ENST00000514329
  gene symbol: WHSC1
  hgvsc: ENST00000514329.1:c.118+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+22T>C
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-1941539-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1941539
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1941539
    reference: chr 4
allele count: 1
allele frequency: 8.260639703938672e-6
allele num: 121056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000329167
  ensembl transcript: ENST00000353275
  gene symbol: WHSC1
  hgvsc: ENST00000353275.5:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000482415
  gene symbol: WHSC1
  hgvsc: ENST00000482415.2:n.498+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl transcript: ENST00000513726
  gene symbol: WHSC1
  hgvsc: ENST00000513726.1:n.160+4550T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372351
  ensembl transcript: ENST00000382895
  gene symbol: WHSC1
  hgvsc: ENST00000382895.3:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000399251
  ensembl transcript: ENST00000420906
  gene symbol: WHSC1
  hgvsc: ENST00000420906.2:c.*25T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000372348
  ensembl transcript: ENST00000382892
  gene symbol: WHSC1
  hgvsc: ENST00000382892.2:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000421681
  ensembl transcript: ENST00000514045
  gene symbol: WHSC1
  hgvsc: ENST00000514045.1:c.*25T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000424482
  ensembl transcript: ENST00000511904
  gene symbol: WHSC1
  hgvsc: ENST00000511904.1:c.*89+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000423972
  ensembl transcript: ENST00000508803
  gene symbol: WHSC1
  hgvsc: ENST00000508803.1:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000308780
  ensembl transcript: ENST00000312087
  gene symbol: WHSC1
  hgvsc: ENST00000312087.6:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000381311
  ensembl transcript: ENST00000398261
  gene symbol: WHSC1
  hgvsc: ENST00000398261.1:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109685
  ensembl protein: ENSP00000425761
  ensembl transcript: ENST00000503128
  gene symbol: WHSC1
  hgvsc: ENST00000503128.1:c.1881+34T>G
  variant of: http://identifiers.org/hgnc/12766
canonical: false
consequence: 3' UTR
filter: PASS
num of homozygotes: 0
reference allele: T

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 3.933910306845004e-3
allele num: 2542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.598784194528875e-4
allele num: 3948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 1.539e0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.008e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.811e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

QD
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 6.74489e5

GenotypeDepth
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 385
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 12796
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2062
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 12661
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 988
bin: 3.25e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 7.081038552321007e-3
allele num: 2542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 6.684491978609625e-3
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 3.292806484295846e-3
allele num: 3948
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

FS
type: SiteQuality
SIO_000300: 1.539e0

MQ
type: SiteQuality
SIO_000300: 5.008e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.811e-1

QD
type: SiteQuality
SIO_000300: 2.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.74489e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeDepth
all individuals: 392
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 24

GenotypeQuality
all individuals: 988
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 12796
bin: 2.5e0
variant carriers: 62

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 5531
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 2062
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12661
bin: 7.5e0
variant carriers: 52

GenotypeQuality
all individuals: 73
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2499
bin: 1.25e1
variant carriers: 56

GenotypeQuality
all individuals: 1085
bin: 2.75e1
variant carriers: 22

European (Non-Finnish)
type: Population
allele count: 49
allele frequency: 1.24113475177305e-2
allele num: 3948
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 2.13903743315508e-2
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.041666666666667e-2
allele num: 96
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 2.649006622516556e-2
allele num: 302
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 6.294256490952006e-3
allele num: 2542
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.898635477582846e-3
allele num: 1026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.008e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.811e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 1.539e0

DP
type: SiteQuality
SIO_000300: 6.74489e5

QD
type: SiteQuality
SIO_000300: 2.15e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 3.540519276160504e-3
allele num: 2542
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 9.933774834437087e-3
allele num: 302
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.811e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

FS
type: SiteQuality
SIO_000300: 1.539e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 6.74489e5

MQ
type: SiteQuality
SIO_000300: 5.008e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeDepth
all individuals: 624
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7460
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3136
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 7.142857142857143e-3
allele num: 420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 7.70027e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.234e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

FS
type: SiteQuality
SIO_000300: 3.078e0

MQ
type: SiteQuality
SIO_000300: 4.282e1

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

GenotypeDepth
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7756
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7053
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.021148036253776e-4
allele num: 3310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 4.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.199e-1

DP
type: SiteQuality
SIO_000300: 7.69399e5

GenotypeDepth
all individuals: 545
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9860
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5988
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.608e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 7.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.480000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.791e0

MQ
type: SiteQuality
SIO_000300: 5.308e1

DP
type: SiteQuality
SIO_000300: 7.63423e5

GenotypeDepth
all individuals: 564
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5988
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 9860
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.546099290780142e-3
allele num: 282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 1.585471317382531e-3
allele num: 6938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.47945205479452e-4
allele num: 3650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 2.061855670103093e-2
allele num: 194
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.791e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 3.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.480000000000001e-2

DP
type: SiteQuality
SIO_000300: 7.63423e5

QD
type: SiteQuality
SIO_000300: 7.04e0

MQ
type: SiteQuality
SIO_000300: 5.308e1

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e0

GenotypeDepth
all individuals: 255
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5588
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10875
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 671
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.663825253063399e-4
allele num: 3754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7050
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.075e-1

QD
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 7.59929e5

MQ
type: SiteQuality
SIO_000300: 5.492e1

FS
type: SiteQuality
SIO_000300: 2.544e0

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

GenotypeDepth
all individuals: 557
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 607
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16256
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3838
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.640371229698376e-4
allele num: 4310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.628222523744912e-3
allele num: 7370
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.992e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

QD
type: SiteQuality
SIO_000300: 6.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

DP
type: SiteQuality
SIO_000300: 7.51773e5

MQ
type: SiteQuality
SIO_000300: 5.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.660000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.515e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e0

GenotypeDepth
all individuals: 623
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3468
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19013
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.182453077258839e-4
allele num: 4582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.31e-2

MQ
type: SiteQuality
SIO_000300: 5.58e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

DP
type: SiteQuality
SIO_000300: 7.47689e5

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

QD
type: SiteQuality
SIO_000300: 1.62e0

GenotypeDepth
all individuals: 6425
bin: 2.25e1
variant carriers: 17

GenotypeDepth
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 29800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2328
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 5013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8875
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 863
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 966
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2909
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.873563218390805e-4
allele num: 3480
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.846829880728185e-4
allele num: 12744
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.008064516129032e-3
allele num: 8928
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.043115438108484e-3
allele num: 5752
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 3.757985719654265e-3
allele num: 5322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 1.400693224443284e-3
allele num: 42122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

FS
type: SiteQuality
SIO_000300: 3.82e0

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

DP
type: SiteQuality
SIO_000300: 9.89248e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeDepth
all individuals: 1058
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5013
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 111
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 21
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 598
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.354048964218456e-4
allele num: 12744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.899245050092588e-4
allele num: 42122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

FS
type: SiteQuality
SIO_000300: 3.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 9.89248e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

MQ
type: SiteQuality
SIO_000300: 5.801e1

GenotypeDepth
all individuals: 160
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1127
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3547
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 757
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.388274530454625e-4
allele num: 11394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.574356159370569e-5
allele num: 43722
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.565e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.215e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.106e0

VQSLOD
type: SiteQuality
SIO_000300: -1.182e2

FS
type: SiteQuality
SIO_000300: 1.5772e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

DP
type: SiteQuality
SIO_000300: 1.047662e6

QD
type: SiteQuality
SIO_000300: 5.24e0

MQ
type: SiteQuality
SIO_000300: 5.469e1

GenotypeDepth
all individuals: 80
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12291
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 13185
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 692
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1190
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 857
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1461
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20083
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6280
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3557
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.654436485893875e-4
allele num: 13682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.007052412245552e-5
allele num: 49912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.463e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.65e0

QD
type: SiteQuality
SIO_000300: 6.09e0

DP
type: SiteQuality
SIO_000300: 1.116632e6

FS
type: SiteQuality
SIO_000300: 1.1517e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 5.512e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.33e0

GenotypeDepth
all individuals: 174
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1710
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 450
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8276
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20384
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 945
bin: 4.75e1
variant carriers: 1

South Asian
type: Population
allele count: 5
allele frequency: 3.533069530808366e-4
allele num: 14152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.779146668682211e-5
allele num: 52922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.483e1

QD
type: SiteQuality
SIO_000300: 6.47e0

MQ
type: SiteQuality
SIO_000300: 5.568e1

FS
type: SiteQuality
SIO_000300: 6.877200000000001e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.579e0

DP
type: SiteQuality
SIO_000300: 1.196505e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.427e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.347e0

GenotypeDepth
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12362
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2938
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37312
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.809691975671964e-5
allele num: 10194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 1.487441e6

MQ
type: SiteQuality
SIO_000300: 5.805e1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.737e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2164
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.500857e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.559e0

FS
type: SiteQuality
SIO_000300: 1.025e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.471e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38395
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12463
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2648
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

QD
type: SiteQuality
SIO_000300: 1.337e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 3.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.500837e6

GenotypeDepth
all individuals: 1260
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5025
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.774e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.011e0

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.502075e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.439e1

VQSLOD
type: SiteQuality
SIO_000300: -1.739e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

DP
type: SiteQuality
SIO_000300: 1.504072e6

GenotypeDepth
all individuals: 40610
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 381
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5035
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12388
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505525277769414e-5
allele num: 66422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.504013e6

FS
type: SiteQuality
SIO_000300: 1.128e0

MQ
type: SiteQuality
SIO_000300: 5.764e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.166e1

VQSLOD
type: SiteQuality
SIO_000300: -1.52e0

MQRankSum
type: SiteQuality
SIO_000300: -4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.322e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5038
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.695e0

DP
type: SiteQuality
SIO_000300: 1.503861e6

VQSLOD
type: SiteQuality
SIO_000300: -4.531e-1

QD
type: SiteQuality
SIO_000300: 9.029999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

GenotypeDepth
all individuals: 5062
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1266
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.503199e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.521e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.67e-1

QD
type: SiteQuality
SIO_000300: 8.66e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

GenotypeDepth
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1250
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12386
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.938e0

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

DP
type: SiteQuality
SIO_000300: 1.503139e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.05e-1

QD
type: SiteQuality
SIO_000300: 1.732e1

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 11

GenotypeDepth
all individuals: 5090
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 38342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 2.892402622445044e-3
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.505324e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.854e1

GenotypeDepth
all individuals: 50
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1251
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12376
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.854e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

DP
type: SiteQuality
SIO_000300: 1.505324e6

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.223e0

FS
type: SiteQuality
SIO_000300: 3.271e0

DP
type: SiteQuality
SIO_000300: 1.503801e6

MQ
type: SiteQuality
SIO_000300: 5.7e1

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeDepth
all individuals: 5099
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.098e1

VQSLOD
type: SiteQuality
SIO_000300: 5.580000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 1.503972e6

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

GenotypeDepth
all individuals: 2163
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39908
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12358
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.530347299617458e-5
allele num: 66398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

VQSLOD
type: SiteQuality
SIO_000300: -3.341e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

MQ
type: SiteQuality
SIO_000300: 5.86e1

DP
type: SiteQuality
SIO_000300: 1.500087e6

FS
type: SiteQuality
SIO_000300: 4.853e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

GenotypeDepth
all individuals: 9885
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12342
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

DP
type: SiteQuality
SIO_000300: 1.498007e6

FS
type: SiteQuality
SIO_000300: 1.584e0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.211e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.061e0

MQ
type: SiteQuality
SIO_000300: 5.662e1

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 728
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 723
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507113576079093e-5
allele num: 66352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: -8.911e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 6.36e-1

QD
type: SiteQuality
SIO_000300: 9.17e0

DP
type: SiteQuality
SIO_000300: 1.498159e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507068149621726e-5
allele num: 66354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498334e6

MQ
type: SiteQuality
SIO_000300: 5.815e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.553e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.11e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.132e0

FS
type: SiteQuality
SIO_000300: 2.044e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

GenotypeDepth
all individuals: 294
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 722
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.116883116883117e-4
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.553e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

MQ
type: SiteQuality
SIO_000300: 5.815e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.498334e6

FS
type: SiteQuality
SIO_000300: 2.044e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.132e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

GenotypeDepth
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 717
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.463e0

FS
type: SiteQuality
SIO_000300: 2.917e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.324e1

DP
type: SiteQuality
SIO_000300: 1.472137e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31733
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 625
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.470373e6

MQRankSum
type: SiteQuality
SIO_000300: -1.165e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.87e-1

QD
type: SiteQuality
SIO_000300: 7.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.795e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.788566953797964e-5
allele num: 10216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 5.454e0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.21e-1

QD
type: SiteQuality
SIO_000300: 7.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.459e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.659e1

DP
type: SiteQuality
SIO_000300: 1.47121e6

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2772
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10783
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25930
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.580432392817882e-5
allele num: 65496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 4.894e0

VQSLOD
type: SiteQuality
SIO_000300: -1.78e-2

DP
type: SiteQuality
SIO_000300: 1.485617e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e-2

QD
type: SiteQuality
SIO_000300: 1.523e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.079e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6661
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 17023
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64456
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032204789430223e-4
allele num: 9688
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.822763443453099e-4
allele num: 8294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.52051e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

FS
type: SiteQuality
SIO_000300: 9.007999999999999e0

QD
type: SiteQuality
SIO_000300: 1.546e1

VQSLOD
type: SiteQuality
SIO_000300: -9.45e-2

GenotypeDepth
all individuals: 1096
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2139
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6698
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4483
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.819e1

FS
type: SiteQuality
SIO_000300: 5.561e0

MQ
type: SiteQuality
SIO_000300: 5.751e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e0

DP
type: SiteQuality
SIO_000300: 1.56388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.808999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6730
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.074179962495004e-5
allele num: 65058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 1.422e0

DP
type: SiteQuality
SIO_000300: 1.607471e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.504e1

GenotypeDepth
all individuals: 36
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3721
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537089981247502e-5
allele num: 65058
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.607471e6

FS
type: SiteQuality
SIO_000300: 1.422e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

GenotypeDepth
all individuals: 57
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 629
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2236
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6729
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4702
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.024291497975708e-4
allele num: 9880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65062
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 1.610633e6

FS
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.529e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.35e0

GenotypeDepth
all individuals: 2155
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6754
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1655
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7592
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4786
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004419445560466e-4
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65214
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.02e-1

QD
type: SiteQuality
SIO_000300: 1.345e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.621169e6

GenotypeDepth
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2179
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3977
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.667107e6

QD
type: SiteQuality
SIO_000300: 1.102e1

FS
type: SiteQuality
SIO_000300: 3.932e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

GenotypeDepth
all individuals: 3977
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 628
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14578
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1105
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6811
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3662
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528575310207409e-5
allele num: 66246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

FS
type: SiteQuality
SIO_000300: 3.932e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.475e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 1.102e1

DP
type: SiteQuality
SIO_000300: 1.667107e6

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14652
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 628
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8716
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

DP
type: SiteQuality
SIO_000300: 1.669507e6

QD
type: SiteQuality
SIO_000300: 1.014e1

FS
type: SiteQuality
SIO_000300: 1.4057e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.868e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6822
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1736
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28060
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 9.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.674063e6

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

FS
type: SiteQuality
SIO_000300: 1.124e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.103e0

GenotypeDepth
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14767
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2190
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27892
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28136
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.656237929702588e-5
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.31e-1

QD
type: SiteQuality
SIO_000300: 5.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.369e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

DP
type: SiteQuality
SIO_000300: 1.674285e6

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

GenotypeDepth
all individuals: 2194
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4027
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4030
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002552169343942e-5
allele num: 66610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.679206e6

GenotypeDepth
all individuals: 629
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15203
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8997
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6837
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3782
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.845e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -2.138e0

MQRankSum
type: SiteQuality
SIO_000300: -5.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

FS
type: SiteQuality
SIO_000300: 1.5156e1

DP
type: SiteQuality
SIO_000300: 1.683767e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.621e0

GenotypeDepth
all individuals: 15313
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9048
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4076
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6848
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.535e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

FS
type: SiteQuality
SIO_000300: 1.874e0

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

DP
type: SiteQuality
SIO_000300: 1.686386e6

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27331
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15326
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9063
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4076
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 6.812e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.686812e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

VQSLOD
type: SiteQuality
SIO_000300: 4.78e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeDepth
all individuals: 2214
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 631
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9074
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28144
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 1.687031e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.28e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeDepth
all individuals: 63
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27289
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6851
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28160
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.091e1

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.813e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

DP
type: SiteQuality
SIO_000300: 1.68764e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1113
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6852
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3803
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5238
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

VQSLOD
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 1.881e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.06e1

DP
type: SiteQuality
SIO_000300: 1.687792e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27278
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9090
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4083
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 630
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.403e0

QD
type: SiteQuality
SIO_000300: 1.607e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.107e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.687445e6

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9085
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 630
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2218
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6850
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5236
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 5.848e1

DP
type: SiteQuality
SIO_000300: 1.68729e6

QD
type: SiteQuality
SIO_000300: 1.223e1

VQSLOD
type: SiteQuality
SIO_000300: -1.475e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

GenotypeDepth
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4071
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2219
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6849
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27777
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -6.37e-1

DP
type: SiteQuality
SIO_000300: 1.682741e6

FS
type: SiteQuality
SIO_000300: 9.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.996e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.977e0

GenotypeDepth
all individuals: 242
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15231
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8315
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27840
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6852
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.681914e6

QD
type: SiteQuality
SIO_000300: 1.248e1

MQRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 1.798e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeDepth
all individuals: 2210
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27069
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 633
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6854
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.681421e6

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: -4.488e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 9008
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15113
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6855
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 4.153e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 1.594e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.678909e6

GenotypeDepth
all individuals: 2212
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1111
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 237
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6855
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4070
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.594e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.678909e6

FS
type: SiteQuality
SIO_000300: 4.153e0

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 490
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8979
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27445
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6858
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.933488012374323e-4
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424830261881668e-4
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.507753335737469e-5
allele num: 66552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

DP
type: SiteQuality
SIO_000300: 1.677428e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

FS
type: SiteQuality
SIO_000300: 3.706e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeDepth
all individuals: 8956
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 543
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 635
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6857
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5208
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8251
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502765087761481e-5
allele num: 66544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.121e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.146e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.6758e6

MQRankSum
type: SiteQuality
SIO_000300: 3.08e0

VQSLOD
type: SiteQuality
SIO_000300: -2.372e0

GenotypeDepth
all individuals: 572
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8934
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4069
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14960
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2212
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 363
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6856
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5209
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

FS
type: SiteQuality
SIO_000300: 1.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 1.674917e6

MQ
type: SiteQuality
SIO_000300: 6.016e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

QD
type: SiteQuality
SIO_000300: 1.538e1