4-1806010-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806010
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806010
    reference: chr 4
allele count: 3
allele frequency: 2.910135030265404e-5
allele num: 103088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-541C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-47C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-541C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-47C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-47C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-47C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1977
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25710
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3980
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

4-1806011-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
allele count: 1
allele frequency: 9.743549770052226e-6
allele num: 102632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-46G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-46G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-46G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-46G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-540G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-540G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25672
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

4-1806011-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
allele count: 2
allele frequency: 1.948709954010445e-5
allele num: 102632
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-45dupT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-45dupT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-45dupT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-539dupT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-539dupT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-45dupT
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25672
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

4-1806011-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
allele count: 3
allele frequency: 2.923064931015668e-5
allele num: 102632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-46G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-46G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-46G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-46G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-540G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-540G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25672
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

4-1806012-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
allele count: 1
allele frequency: 1.05572095183801e-5
allele num: 94722
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-45_1076-44insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-45_1076-44insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-45_1076-44insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-539_931-538insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-539_931-538insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-45_1082-44insC
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

4-1806012-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
allele count: 1896
allele frequency: 2.001646924684867e-2
allele num: 94722
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-34dupG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-34dupG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-528dupG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-528dupG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-34dupG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-34dupG
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 5.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 130
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 5.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 34658
  bin: 9.75e1
  variant carriers: 1149
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD

4-1806012-T-TGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
allele count: 4
allele frequency: 4.222883807352041e-5
allele num: 94722
alternate allele: TGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-35_1076-34dupGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-35_1076-34dupGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-529_931-528dupGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-529_931-528dupGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-35_1076-34dupGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-35_1082-34dupGG
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34658
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

4-1806012-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806011
    reference: chr 4
allele count: 44284
allele frequency: 4.675154663119444e-1
allele num: 94722
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-34delG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-34delG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-528delG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-34delG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-528delG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-34delG
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 3916
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 4579
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 2911
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 895
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 1108
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 1192
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 1763
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 1116
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 856
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 4617
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.25e1
  variant carriers: 3968
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 2805
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 2767
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 2181
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 1428
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 767
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 1809
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 5.25e1
  variant carriers: 4759
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.75e1
  variant carriers: 3339
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 8.75e1
  variant carriers: 872
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 864
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 4.75e1
  variant carriers: 703
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 572
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 3.25e1
  variant carriers: 643
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 506
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 557
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 633
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 839
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.75e1
  variant carriers: 690
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 811
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 598
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 396
num of homozygotes: 368
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: TG
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-1806012-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806010
    reference: chr 4
allele count: 159
allele frequency: 1.678596313422436e-3
allele num: 94722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-35_1076-34delGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-529_931-528delGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-529_931-528delGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-35_1076-34delGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-35_1082-34delGG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-35_1076-34delGG
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 7.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 2.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 6728
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 994
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 6
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: TGG
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

4-1806013-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
allele count: 3
allele frequency: 1.89873417721519e-3
allele num: 1580
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-538G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-44G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-44G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-538G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-44G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-44G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

4-1806013-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
allele count: 118
allele frequency: 7.468354430379746e-2
allele num: 1580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-538G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-44G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-44G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-44G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-538G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-44G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 7.5e0
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

4-1806013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806013
    reference: chr 4
allele count: 6
allele frequency: 3.79746835443038e-3
allele num: 1580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-44G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-538G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-44G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-44G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-538G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-44G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD

4-1806014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
allele count: 7
allele frequency: 1.471825063078217e-3
allele num: 4756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-43G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-537G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-43G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-43G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-43G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-537G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41980
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

4-1806014-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
allele count: 8
allele frequency: 1.682085786375105e-3
allele num: 4756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-537G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-43G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-537G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-43G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-43G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-43G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41980
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

4-1806014-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
allele count: 7
allele frequency: 1.471825063078217e-3
allele num: 4756
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-43_1076-42insA
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-43_1076-42insA
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-537_931-536insA
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-537_931-536insA
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-43_1076-42insA
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-43_1082-42insA
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41980
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-1806014-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
allele count: 1
allele frequency: 2.102607232968881e-4
allele num: 4756
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-43_1076-42insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-43_1076-42insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-537_931-536insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-537_931-536insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-43_1082-42insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-43_1076-42insT
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41980
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-1806014-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806014
    reference: chr 4
allele count: 72
allele frequency: 1.513877207737595e-2
allele num: 4756
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3174
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 9.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41980
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 520
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 18
  allele frequency: 3.703703703703703e-2
  allele num: 486
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 2
  allele frequency: 5.154639175257732e-3
  allele num: 388
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 2.081598667776853e-3
  allele num: 2402
  num of homozygotes: 0
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

4-1806015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
allele count: 27
allele frequency: 2.636615757196985e-4
allele num: 102404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-42G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-536G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-42G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-42G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-536G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-42G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum

4-1806015-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
allele count: 925
allele frequency: 9.032850279285966e-3
allele num: 102404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-42G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-536G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-42G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-536G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-42G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-42G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 8.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 8
num of homozygotes: 4
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-1806015-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
allele count: 2
allele frequency: 1.953048709034803e-5
allele num: 102404
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-536_931-535insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-42_1076-41insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-42_1082-41insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-536_931-535insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-42_1076-41insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-42_1076-41insT
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-1806015-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
allele count: 20
allele frequency: 1.953048709034803e-4
allele num: 102404
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37387
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.227295041728031e-4
  allele num: 8148
  num of homozygotes: 0
population: African
  type: Population
  allele count: 3
  allele frequency: 3.533568904593639e-4
  allele num: 8490
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 12
  allele frequency: 2.050510918970644e-4
  allele num: 58522
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 732
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

4-1806015-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806015
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
allele count: 1
allele frequency: 9.765243545174017e-6
allele num: 102404
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-42_1076-41insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-42_1082-41insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-536_931-535insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-42_1076-41insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-42_1076-41insC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-536_931-535insC
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

4-1806016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
allele count: 10
allele frequency: 9.339858781335226e-5
allele num: 107068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-41G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-41G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-41G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-41G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-535G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-535G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-1806016-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
allele count: 280
allele frequency: 2.615160458773863e-3
allele num: 107068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-41G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-41G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-535G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-41G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-535G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-41G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 9.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40118
  bin: 9.75e1
  variant carriers: 282
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-1806016-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
allele count: 1
allele frequency: 9.339858781335226e-6
allele num: 107068
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-41_1076-40insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-41_1076-40insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-41_1082-40insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-535_931-534insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-535_931-534insT
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-41_1076-40insT
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40118
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

4-1806016-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806016
    reference: chr 4
allele count: 21
allele frequency: 1.961370344080397e-4
allele num: 107068
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4493
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40118
  bin: 9.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 3
  allele frequency: 2.64456981664316e-4
  allele num: 11344
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8320
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6574
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 1.312335958005249e-3
  allele num: 762
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

4-1806017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
allele count: 2
allele frequency: 1.86633321513223e-5
allele num: 107162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-40G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-534G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-40G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-40G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-40G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-534G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-1806017-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
allele count: 199
allele frequency: 1.857001549056568e-3
allele num: 107162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-40G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-534G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-534G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-40G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-40G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-40G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 9.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 40103
  bin: 9.75e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 1
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

4-1806017-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806017
    reference: chr 4
allele count: 16
allele frequency: 1.493066572105784e-4
allele num: 107162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-534G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-40G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-40G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-534G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-40G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-40G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5762
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2322
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

4-1806018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
allele count: 5
allele frequency: 4.658008980641314e-5
allele num: 107342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-533G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-39G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-533G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-39G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-39G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-39G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-1806018-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
allele count: 101
allele frequency: 9.409178140895455e-4
allele num: 107342
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-39G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-533G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-39G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-39G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-533G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-39G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

4-1806018-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806018
    reference: chr 4
allele count: 11
allele frequency: 1.024761975741089e-4
allele num: 107342
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-39G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-533G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-39G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-533G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-39G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-39G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4535
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5752
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

4-1806019-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
allele count: 2
allele frequency: 1.861123001619177e-5
allele num: 107462
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-38G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-532G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-38G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-38G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-38G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-532G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

4-1806019-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
allele count: 1
allele frequency: 9.305615008095886e-6
allele num: 107462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-38G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-38G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-532G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-38G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-532G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-38G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-1806019-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806019
    reference: chr 4
allele count: 1
allele frequency: 9.305615008095886e-6
allele num: 107462
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-38G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-532G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-38G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-38G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-532G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-38G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

4-1806020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
allele count: 7
allele frequency: 6.507390536394906e-5
allele num: 107570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-37G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-531G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-37G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-531G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-37G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-37G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-1806020-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
allele count: 4
allele frequency: 3.718508877939946e-5
allele num: 107570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-37G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-531G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-37G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-37G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-37G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-531G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40078
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

4-1806020-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806020
    reference: chr 4
allele count: 2
allele frequency: 1.859254438969973e-5
allele num: 107570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-531G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-37G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-37G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-37G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-531G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-37G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

4-1806021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
allele count: 2
allele frequency: 1.857389624621557e-5
allele num: 107678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-530G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-36G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-36G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-530G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-36G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-36G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-1806021-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
allele count: 9
allele frequency: 8.358253310797005e-5
allele num: 107678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-36G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-36G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-530G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-530G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-36G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-36G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40085
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-1806021-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806021
    reference: chr 4
allele count: 14
allele frequency: 1.30017273723509e-4
allele num: 107678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-530G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-36G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-36G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-36G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-530G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-36G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4868
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

4-1806022-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
allele count: 1
allele frequency: 9.282637754344274e-6
allele num: 107728
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-35G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-529G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-35G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-35G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-35G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-529G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-1806022-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
allele count: 2
allele frequency: 1.856527550868855e-5
allele num: 107728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-35G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-529G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-35G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-35G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-529G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-35G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40097
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

4-1806022-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
allele count: 22
allele frequency: 2.04218030595574e-4
allele num: 107728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-35G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-529G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-35G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-35G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-529G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-35G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4041
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

4-1806023-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806023
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806022
    reference: chr 4
allele count: 1
allele frequency: 9.30682748864567e-6
allele num: 107448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-32delC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-526delC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-32delC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-526delC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-32delC
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-32delC
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4866
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: GC
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

4-1806024-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806024
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806024
    reference: chr 4
allele count: 9
allele frequency: 8.365556216537775e-5
allele num: 107584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-527C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-33C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-33C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-33C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-33C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-527C>G
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3225
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4869
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

4-1806029-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806029
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806029
    reference: chr 4
allele count: 2
allele frequency: 1.840231133030308e-5
allele num: 108682
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-28C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-28C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-522C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-28C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-522C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-28C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5731
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40152
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

4-1806033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806033
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806033
    reference: chr 4
allele count: 1
allele frequency: 9.150972748403155e-6
allele num: 109278
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-24G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-518G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-24G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-24G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-518G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-24G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-1806033-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806033
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806033
    reference: chr 4
allele count: 15
allele frequency: 1.372645912260473e-4
allele num: 109278
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-24G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-24G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-24G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-518G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-24G>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-518G>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40165
  bin: 9.75e1
  variant carriers: 14
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-1806037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806037
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806037
    reference: chr 4
allele count: 1
allele frequency: 9.116435109214892e-6
allele num: 109692
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-20C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-20C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-20C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-514C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-20C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-514C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

4-1806039-A-ATTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806039
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806042
    reference: chr 4
allele count: 1
allele frequency: 9.095374092736435e-6
allele num: 109946
alternate allele: ATTG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-18_1076-17insTTG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-18_1076-17insTTG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-18_1076-17insTTG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-512_931-511insTTG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-512_931-511insTTG
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-18_1082-17insTTG
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-1806040-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806040
    reference: chr 4
allele count: 1
allele frequency: 9.095043201455207e-6
allele num: 109950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-511C>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-17C>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-17C>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-17C>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-17C>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-511C>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

4-1806040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806040
    reference: chr 4
allele count: 730
allele frequency: 6.639381537062301e-3
allele num: 109950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-17C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-17C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-511C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-511C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-17C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-17C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 8.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 9.75e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 40406
  bin: 9.75e1
  variant carriers: 706
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 21
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-1806041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806041
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806041
    reference: chr 4
allele count: 302
allele frequency: 2.737292437096657e-3
allele num: 110328
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-16G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-510G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-16G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-510G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-16G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-16G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 9.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-1806043-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806043
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806043
    reference: chr 4
allele count: 1
allele frequency: 9.026574234546504e-6
allele num: 110784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-14C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-508C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-14C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-508C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-14C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-14C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4053
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-1806044-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806044
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806044
    reference: chr 4
allele count: 1
allele frequency: 9.007223793482373e-6
allele num: 111022
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-13C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-13C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-13C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-507C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-507C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-13C>G
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

4-1806044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806044
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806044
    reference: chr 4
allele count: 728
allele frequency: 6.557258921655168e-3
allele num: 111022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1076-13C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-507C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-507C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1076-13C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1082-13C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1076-13C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6176
  bin: 9.75e1
  variant carriers: 462
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 7.5e0
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5078
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4134
  bin: 2.25e1
  variant carriers: 3
num of homozygotes: 8
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-1806058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806058
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806058
    reference: chr 4
allele count: 3
allele frequency: 2.655431242033706e-5
allele num: 112976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-493C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1083C>T
  hgvsp: ENST00000340107.4:c.1083C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-493C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1077C>T
  hgvsp: ENST00000440486.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1077C>T
  hgvsp: ENST00000481110.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1077C>T
  hgvsp: ENST00000260795.2:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1083C>T
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-1806059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806059
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806059
    reference: chr 4
allele count: 5
allele frequency: 4.405131096701438e-5
allele num: 113504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1078G>A
  hgvsp: ENSP00000420533.2:p.Glu360Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1084G>A
  hgvsp: ENSP00000339824.4:p.Glu362Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1078G>A
  hgvsp: ENSP00000260795.2:p.Glu360Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1078G>A
  hgvsp: ENSP00000414914.2:p.Glu360Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-492G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-492G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40324
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu362Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

4-1806059-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806059
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806059
    reference: chr 4
allele count: 3
allele frequency: 2.643078658020863e-5
allele num: 113504
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1078G>C
  hgvsp: ENSP00000260795.2:p.Glu360Gln
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-492G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1084G>C
  hgvsp: ENSP00000339824.4:p.Glu362Gln
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1078G>C
  hgvsp: ENSP00000420533.2:p.Glu360Gln
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1078G>C
  hgvsp: ENSP00000414914.2:p.Glu360Gln
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-492G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu362Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-1806063-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806063
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806063
    reference: chr 4
allele count: 1
allele frequency: 8.75825465501235e-6
allele num: 114178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1082A>C
  hgvsp: ENSP00000420533.2:p.Glu361Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-488A>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1082A>C
  hgvsp: ENSP00000414914.2:p.Glu361Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1082A>C
  hgvsp: ENSP00000260795.2:p.Glu361Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1088A>C
  hgvsp: ENSP00000339824.4:p.Glu363Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-488A>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40324
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu363Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

4-1806074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806074
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806074
    reference: chr 4
allele count: 1
allele frequency: 8.627681051886874e-6
allele num: 115906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1093G>A
  hgvsp: ENSP00000260795.2:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-477G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1093G>A
  hgvsp: ENSP00000420533.2:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1093G>A
  hgvsp: ENSP00000414914.2:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-477G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1099G>A
  hgvsp: ENSP00000339824.4:p.Glu367Lys
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4840
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu367Lys
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

4-1806082-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806082
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806082
    reference: chr 4
allele count: 1
allele frequency: 8.547592997811816e-6
allele num: 116992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1101C>G
  hgvsp: ENSP00000260795.2:p.Asp367Glu
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-469C>G
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1101C>G
  hgvsp: ENSP00000420533.2:p.Asp367Glu
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1107C>G
  hgvsp: ENSP00000339824.4:p.Asp369Glu
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1101C>G
  hgvsp: ENSP00000414914.2:p.Asp367Glu
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-469C>G
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40329
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8136
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp369Glu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

4-1806082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806082
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806082
    reference: chr 4
allele count: 3
allele frequency: 2.564277899343545e-5
allele num: 116992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-469C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1107C>T
  hgvsp: ENST00000340107.4:c.1107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1101C>T
  hgvsp: ENST00000260795.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1101C>T
  hgvsp: ENST00000481110.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1101C>T
  hgvsp: ENST00000440486.2:c.1101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-469C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40329
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp369Asp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

4-1806083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806083
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806083
    reference: chr 4
allele count: 3
allele frequency: 2.559202893605405e-5
allele num: 117224
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1108G>A
  hgvsp: ENSP00000339824.4:p.Glu370Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-468G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1102G>A
  hgvsp: ENSP00000260795.2:p.Glu368Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-468G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1102G>A
  hgvsp: ENSP00000420533.2:p.Glu368Lys
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1102G>A
  hgvsp: ENSP00000414914.2:p.Glu368Lys
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8272
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu370Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-1806084-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806084
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806084
    reference: chr 4
allele count: 1
allele frequency: 8.521662064969151e-6
allele num: 117348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1103A>C
  hgvsp: ENSP00000420533.2:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1103A>C
  hgvsp: ENSP00000414914.2:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1103A>C
  hgvsp: ENSP00000260795.2:p.Glu368Ala
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-467A>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-467A>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1109A>C
  hgvsp: ENSP00000339824.4:p.Glu370Ala
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40328
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu370Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

4-1806085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806085
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806085
    reference: chr 4
allele count: 1
allele frequency: 8.514116404999489e-6
allele num: 117452
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-466G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1104G>A
  hgvsp: ENST00000440486.2:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1104G>A
  hgvsp: ENST00000260795.2:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1104G>A
  hgvsp: ENST00000481110.2:c.1104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1110G>A
  hgvsp: ENST00000340107.4:c.1110G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-466G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu370Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

4-1806087-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806087
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806087
    reference: chr 4
allele count: 6
allele frequency: 5.099092361559642e-5
allele num: 117668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1106C>T
  hgvsp: ENSP00000414914.2:p.Ala369Val
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1106C>T
  hgvsp: ENSP00000260795.2:p.Ala369Val
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1112C>T
  hgvsp: ENSP00000339824.4:p.Ala371Val
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-464C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1106C>T
  hgvsp: ENSP00000420533.2:p.Ala369Val
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-464C>T
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4066
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala371Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

4-1806088-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806088
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806088
    reference: chr 4
allele count: 5
allele frequency: 4.241313789359392e-5
allele num: 117888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-463G>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1107G>A
  hgvsp: ENST00000481110.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1107G>A
  hgvsp: ENST00000440486.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1113G>A
  hgvsp: ENST00000340107.4:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1107G>A
  hgvsp: ENST00000260795.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-463G>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40332
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala371Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

4-1806093-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806093
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806093
    reference: chr 4
allele count: 1
allele frequency: 8.441383036196651e-6
allele num: 118464
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1112G>C
  hgvsp: ENSP00000420533.2:p.Ser371Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1118G>C
  hgvsp: ENSP00000339824.4:p.Ser373Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1112G>C
  hgvsp: ENSP00000414914.2:p.Ser371Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1112G>C
  hgvsp: ENSP00000260795.2:p.Ser371Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-458G>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-458G>C
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1381
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser373Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

4-1806108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806108
    reference: chr 4
allele count: 2
allele frequency: 1.678302900107411e-5
allele num: 119168
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1133T>C
  hgvsp: ENSP00000339824.4:p.Ile378Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1127T>C
  hgvsp: ENSP00000260795.2:p.Ile376Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-443T>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-443T>C
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1127T>C
  hgvsp: ENSP00000414914.2:p.Ile376Thr
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1127T>C
  hgvsp: ENSP00000420533.2:p.Ile376Thr
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile378Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

4-1806108-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806108
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806108
    reference: chr 4
allele count: 1
allele frequency: 8.391514500537057e-6
allele num: 119168
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1133T>A
  hgvsp: ENSP00000339824.4:p.Ile378Asn
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1127T>A
  hgvsp: ENSP00000260795.2:p.Ile376Asn
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-443T>A
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1127T>A
  hgvsp: ENSP00000414914.2:p.Ile376Asn
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1127T>A
  hgvsp: ENSP00000420533.2:p.Ile376Asn
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-443T>A
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile378Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-1806109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1806109
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 1806109
    reference: chr 4
allele count: 1
allele frequency: 8.389261744966442e-6
allele num: 119200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000231803
  ensembl transcript: ENST00000352904
  gene symbol: FGFR3
  hgvsc: ENST00000352904.1:c.931-442C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000420533
  ensembl transcript: ENST00000481110
  gene symbol: FGFR3
  hgvsc: ENST00000481110.2:c.1128C>T
  hgvsp: ENST00000481110.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000414914
  ensembl transcript: ENST00000440486
  gene symbol: FGFR3
  hgvsc: ENST00000440486.2:c.1128C>T
  hgvsp: ENST00000440486.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000412903
  ensembl transcript: ENST00000412135
  gene symbol: FGFR3
  hgvsc: ENST00000412135.2:c.931-442C>T
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000260795
  ensembl transcript: ENST00000260795
  gene symbol: FGFR3
  hgvsc: ENST00000260795.2:c.1128C>T
  hgvsp: ENST00000260795.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068078
  ensembl protein: ENSP00000339824
  ensembl transcript: ENST00000340107
  gene symbol: FGFR3
  hgvsc: ENST00000340107.4:c.1134C>T
  hgvsp: ENST00000340107.4:c.1134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/3690
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40336
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile378Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 995
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.700275444622029e-5
allele num: 58814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.161227577263886e-4
allele num: 9254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11210
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

DP
type: SiteQuality
SIO_000300: 3.458694e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.26e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

FS
type: SiteQuality
SIO_000300: 4.751e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

GenotypeQuality
all individuals: 1347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.70695070326369e-5
allele num: 58584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.031e0

QD
type: SiteQuality
SIO_000300: 1.613e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 3.455001e6

GenotypeQuality
all individuals: 663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2875
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.202212070209185e-4
allele num: 8318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.094570928196147e-4
allele num: 9136
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

DP
type: SiteQuality
SIO_000300: 3.455001e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.031e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

GenotypeQuality
all individuals: 3883
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1426
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.942944017170452e-5
allele num: 11182
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.189141856392294e-4
allele num: 9136
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.031e0

DP
type: SiteQuality
SIO_000300: 3.455001e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34658
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.836007784673007e-5
allele num: 54466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.485e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 2.974803e6

QD
type: SiteQuality
SIO_000300: 5.26e0

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 44

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 41

GenotypeQuality
all individuals: 947
bin: 8.75e1
variant carriers: 41

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 63

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 25

GenotypeQuality
all individuals: 870
bin: 4.75e1
variant carriers: 63

GenotypeQuality
all individuals: 893
bin: 4.25e1
variant carriers: 55

European (Non-Finnish)
type: Population
allele count: 801
allele frequency: 1.470642235523079e-2
allele num: 54466
num of homozygotes: 0

East Asian
type: Population
allele count: 70
allele frequency: 9.28135773004508e-3
allele num: 7542
num of homozygotes: 0

African
type: Population
allele count: 460
allele frequency: 6.083046813012431e-2
allele num: 7562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 51
allele frequency: 9.454949944382647e-3
allele num: 5394
num of homozygotes: 0

South Asian
type: Population
allele count: 338
allele frequency: 3.868162050812543e-2
allele num: 8738
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.880877742946709e-2
allele num: 638
num of homozygotes: 0

Latino
type: Population
allele count: 164
allele frequency: 1.579657098824889e-2
allele num: 10382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.485e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

DP
type: SiteQuality
SIO_000300: 2.974803e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

QD
type: SiteQuality
SIO_000300: 5.26e0

GenotypeQuality
all individuals: 1043
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 884
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1037
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1035
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.672015569346014e-5
allele num: 54466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.322401481089659e-4
allele num: 7562
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.144426642252232e-4
allele num: 8738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.485e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.26e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.974803e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

GenotypeQuality
all individuals: 826
bin: 7.75e1
variant carriers: 743

GenotypeQuality
all individuals: 34658
bin: 9.75e1
variant carriers: 33439

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 866

GenotypeQuality
all individuals: 1035
bin: 6.25e1
variant carriers: 920

GenotypeQuality
all individuals: 910
bin: 5.25e1
variant carriers: 790

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 794

GenotypeQuality
all individuals: 893
bin: 4.25e1
variant carriers: 724

South Asian
type: Population
allele count: 4034
allele frequency: 4.616617074845503e-1
allele num: 8738
num of homozygotes: 68

Latino
type: Population
allele count: 4867
allele frequency: 4.687921402427278e-1
allele num: 10382
num of homozygotes: 28

East Asian
type: Population
allele count: 3604
allele frequency: 4.778573322726067e-1
allele num: 7542
num of homozygotes: 6

African
type: Population
allele count: 3233
allele frequency: 4.275323988362867e-1
allele num: 7562
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 2468
allele frequency: 4.575454208379681e-1
allele num: 5394
num of homozygotes: 19

Other
type: Population
allele count: 298
allele frequency: 4.670846394984326e-1
allele num: 638
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 25780
allele frequency: 4.733228068887012e-1
allele num: 54466
num of homozygotes: 231

QD
type: SiteQuality
SIO_000300: 5.26e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 2.974803e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.485e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

GenotypeQuality
all individuals: 870
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 895
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 884
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 34658
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 893
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 947
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 910
bin: 5.25e1
variant carriers: 11

African
type: Population
allele count: 4
allele frequency: 5.289605924358636e-4
allele num: 7562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 88
allele frequency: 1.615686850512246e-3
allele num: 54466
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 4.577706569008927e-3
allele num: 8738
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.977724741447892e-4
allele num: 7542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.112347052280311e-3
allele num: 5394
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.733769986515122e-3
allele num: 10382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 5.26e0

DP
type: SiteQuality
SIO_000300: 2.974803e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.485e-1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.31578947368421e-3
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 8.771929824561403e-3
allele num: 228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.754e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.16e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.46024e5

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
all individuals: 310
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.026315789473684e-2
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 2.73972602739726e-2
allele num: 146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.136363636363636e-2
allele num: 88
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 3.947368421052632e-1
allele num: 228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.754e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.46024e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 82
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.947368421052632e-3
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.84931506849315e-3
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.272727272727273e-2
allele num: 88
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

VQSLOD
type: SiteQuality
SIO_000300: 8.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.89e-1

DP
type: SiteQuality
SIO_000300: 1.46024e5

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.754e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.818181818181818e-2
allele num: 220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.154639175257732e-3
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.163197335553705e-4
allele num: 2402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

FS
type: SiteQuality
SIO_000300: 8.35e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

DP
type: SiteQuality
SIO_000300: 2.904884e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.658e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.545454545454545e-3
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.248959200666112e-3
allele num: 2402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.172839506172839e-3
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.428571428571429e-3
allele num: 700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 2.904884e6

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.658e-1

FS
type: SiteQuality
SIO_000300: 8.35e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
all individuals: 42
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 8.571428571428572e-3
allele num: 700
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.577319587628866e-3
allele num: 388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.658e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

QD
type: SiteQuality
SIO_000300: 1.237e1

DP
type: SiteQuality
SIO_000300: 2.904884e6

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

FS
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.428571428571429e-3
allele num: 700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.237e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.658e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 8.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

DP
type: SiteQuality
SIO_000300: 2.904884e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 6.714285714285714e-2
allele num: 700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 2.904884e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.116e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.658e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 37387
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.65697568111172e-4
allele num: 10938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.478082487583676e-4
allele num: 9262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.392262738799084e-4
allele num: 58522
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.454590083456063e-4
allele num: 8148
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

DP
type: SiteQuality
SIO_000300: 3.418257e6

FS
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
all individuals: 1223
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37387
bin: 9.75e1
variant carriers: 916

GenotypeQuality
all individuals: 958
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1141
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2459
bin: 2.25e1
variant carriers: 5

African
type: Population
allele count: 85
allele frequency: 1.001177856301531e-2
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 106
allele frequency: 1.679340937896071e-2
allele num: 6312
num of homozygotes: 1

Latino
type: Population
allele count: 52
allele frequency: 4.754068385445237e-3
allele num: 10938
num of homozygotes: 1

South Asian
type: Population
allele count: 86
allele frequency: 9.285251565536601e-3
allele num: 9262
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.46448087431694e-3
allele num: 732
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.595483554246441e-3
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 579
allele frequency: 9.893715184033355e-3
allele num: 58522
num of homozygotes: 2

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

FS
type: SiteQuality
SIO_000300: 8.0e-1

QD
type: SiteQuality
SIO_000300: 1.53e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 3.418257e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
all individuals: 1223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37387
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.417518198284406e-5
allele num: 58522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

QD
type: SiteQuality
SIO_000300: 1.53e1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 3.418257e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

FS
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.584283903675539e-4
allele num: 6312
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.159360829194558e-4
allele num: 9262
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.142439202779301e-5
allele num: 10938
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

DP
type: SiteQuality
SIO_000300: 3.418257e6

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.53e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

FS
type: SiteQuality
SIO_000300: 8.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
all individuals: 1822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37387
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.079680414597279e-4
allele num: 9262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58522
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

DP
type: SiteQuality
SIO_000300: 3.418257e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.83e-2

QD
type: SiteQuality
SIO_000300: 1.53e1

FS
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

GenotypeQuality
all individuals: 1275
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40118
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 8
allele frequency: 8.771929824561404e-4
allele num: 9120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.639183031177261e-5
allele num: 61006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.005833836250251e-4
allele num: 9942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.396591e6

MQ
type: SiteQuality
SIO_000300: 5.877e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 8.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 1.799e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 275
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2659
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2141
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.606202668589975e-4
allele num: 61006
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.023335345001006e-4
allele num: 9942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.624671916010499e-3
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 29
allele frequency: 2.556417489421721e-3
allele num: 11344
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201923076923077e-4
allele num: 8320
num of homozygotes: 0

African
type: Population
allele count: 222
allele frequency: 2.434210526315789e-2
allele num: 9120
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

DP
type: SiteQuality
SIO_000300: 3.396591e6

FS
type: SiteQuality
SIO_000300: 8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

GenotypeQuality
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.096491228070175e-4
allele num: 9120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

QD
type: SiteQuality
SIO_000300: 1.799e1

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 3.396591e6

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.311346424941809e-4
allele num: 61006
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.482456140350877e-4
allele num: 9120
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.023335345001006e-4
allele num: 9942
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.36e-1

QD
type: SiteQuality
SIO_000300: 1.799e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

DP
type: SiteQuality
SIO_000300: 3.396591e6

MQ
type: SiteQuality
SIO_000300: 5.877e1

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40103
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.637840670859539e-5
allele num: 61056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.006441223832528e-4
allele num: 9936
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

FS
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 3.397342e6

QD
type: SiteQuality
SIO_000300: 1.606e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.166e0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1014
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 954
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1455
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1024
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1350
bin: 9.25e1
variant carriers: 3

Other
type: Population
allele count: 4
allele frequency: 5.263157894736842e-3
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 1.939009342499559e-3
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 2.314814814814815e-3
allele num: 9936
num of homozygotes: 1

African
type: Population
allele count: 8
allele frequency: 8.722197993894462e-4
allele num: 9172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.088280060882801e-4
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201634222542658e-4
allele num: 8322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 137
allele frequency: 2.243841719077568e-3
allele num: 61056
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.166e0

DP
type: SiteQuality
SIO_000300: 3.397342e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

GenotypeQuality
all individuals: 262
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40103
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2717
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.813678829543451e-5
allele num: 11346
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.03220611916264e-4
allele num: 9936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.637840670859539e-4
allele num: 61056
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.397342e6

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.606e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.166e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 1.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 921
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40092
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 786
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61158
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.017501508750754e-4
allele num: 9942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.762114537444934e-4
allele num: 11350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.397475e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

QD
type: SiteQuality
SIO_000300: 1.378e1

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 1.722e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.372e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.675e0

GenotypeQuality
all individuals: 40092
bin: 9.75e1
variant carriers: 100

GenotypeQuality
all individuals: 1277
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 20
allele frequency: 1.762114537444934e-3
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.6103500761035e-4
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.312335958005249e-3
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.247456159341849e-4
allele num: 9238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 72
allele frequency: 1.177278524477583e-3
allele num: 61158
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.675e0

FS
type: SiteQuality
SIO_000300: 1.722e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
type: SiteQuality
SIO_000300: 3.397475e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.372e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 887
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40092
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.144576343242094e-4
allele num: 61158
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.023335345001006e-4
allele num: 9942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.397475e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.722e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.675e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.372e0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40070
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633559853633037e-5
allele num: 61216
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.997e1

QD
type: SiteQuality
SIO_000300: 1.315e1

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

FS
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

DP
type: SiteQuality
SIO_000300: 3.39846e6

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40070
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.633559853633037e-5
allele num: 61216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 3.39846e6

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.997e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
all individuals: 40070
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9298
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

FS
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

DP
type: SiteQuality
SIO_000300: 3.39846e6

MQ
type: SiteQuality
SIO_000300: 5.997e1

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40078
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1022
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 7.035175879396985e-4
allele num: 9950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 3.400743e6

QD
type: SiteQuality
SIO_000300: 1.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.406e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

FS
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

GenotypeQuality
all individuals: 1353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.263920621450486e-5
allele num: 61276
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.761493746697199e-4
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.400743e6

FS
type: SiteQuality
SIO_000300: 7.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40078
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2711
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.402113860196973e-4
allele num: 8326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.983e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.28e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.413e1

FS
type: SiteQuality
SIO_000300: 7.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.406e0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

DP
type: SiteQuality
SIO_000300: 3.400743e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.630417060684123e-5
allele num: 61334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

DP
type: SiteQuality
SIO_000300: 3.402818e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.358e1

FS
type: SiteQuality
SIO_000300: 4.009e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.315e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.60317079029546e-4
allele num: 8326
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.066780456582035e-4
allele num: 9374
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.807468733485996e-5
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.003814495081309e-4
allele num: 9962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.891251182052369e-5
allele num: 61334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

DP
type: SiteQuality
SIO_000300: 3.402818e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 4.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.358e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.315e0

GenotypeQuality
all individuals: 747
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 811
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variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.133560913164071e-4
allele num: 9374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.201056930098487e-4
allele num: 8326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.642240620045799e-4
allele num: 11354
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 7.026701465569163e-4
allele num: 9962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61334
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.402818e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.315e0

FS
type: SiteQuality
SIO_000300: 4.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 40097
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.200480192076831e-4
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 3.405162e6

FS
type: SiteQuality
SIO_000300: 7.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

GenotypeQuality
all individuals: 2137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1023
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2809
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.259239945244769e-5
allele num: 61364
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

FS
type: SiteQuality
SIO_000300: 7.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

DP
type: SiteQuality
SIO_000300: 3.405162e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.144e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40097
bin: 9.75e1
variant carriers: 20

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.200480192076831e-4
allele num: 8330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.518479890489538e-5
allele num: 61364
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.012653143201446e-4
allele num: 9958
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.233480176211454e-3
allele num: 11350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.405162e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.49e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 7.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.144e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 440
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40046
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61190
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.815e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 3.407401e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 708
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.060445387062566e-4
allele num: 9430
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.050826946349334e-4
allele num: 9916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.263601057406742e-5
allele num: 61282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

QD
type: SiteQuality
SIO_000300: 2.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e-1

FS
type: SiteQuality
SIO_000300: 2.948e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 3.410181e6

VQSLOD
type: SiteQuality
SIO_000300: -2.891e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 1810
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3877
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GenotypeQuality
all individuals: 1381
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GenotypeQuality
all individuals: 1360
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GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.9147332936744e-5
allele num: 10086
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038421599169263e-4
allele num: 9630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.21e-1

FS
type: SiteQuality
SIO_000300: 7.793e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 3.425574e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 3849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.75609756097561e-5
allele num: 10250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 3.435074e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.695e0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1144
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.125691496204812e-4
allele num: 62184
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.022471910112359e-4
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.695e0

DP
type: SiteQuality
SIO_000300: 3.435074e6

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.602358671965133e-5
allele num: 62408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 4.216e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 1.018e1

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.037e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

DP
type: SiteQuality
SIO_000300: 3.442883e6

MQ
type: SiteQuality
SIO_000300: 6.051e1

GenotypeQuality
all individuals: 40185
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599027791103009e-5
allele num: 62538
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.445883e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 1.693e0

MQRankSum
type: SiteQuality
SIO_000300: 6.18e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.753e1

GenotypeQuality
all individuals: 1152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40406
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1391
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598976654940838e-5
allele num: 62540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.332e0

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

DP
type: SiteQuality
SIO_000300: 3.474888e6

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

QD
type: SiteQuality
SIO_000300: 1.464e1

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1391
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1363
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1990
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4683
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1279
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4163
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 20
allele frequency: 3.197953309881676e-4
allele num: 62540
num of homozygotes: 0

African
type: Population
allele count: 651
allele frequency: 6.606454231784047e-2
allele num: 9854
num of homozygotes: 21

South Asian
type: Population
allele count: 2
allele frequency: 1.928268414963363e-4
allele num: 10372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.512562814070352e-3
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 40
allele frequency: 3.503240497460151e-3
allele num: 11418
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.669051025274201e-3
allele num: 8388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

DP
type: SiteQuality
SIO_000300: 3.474888e6

QD
type: SiteQuality
SIO_000300: 1.464e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.332e0

GenotypeQuality
all individuals: 509
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40307
bin: 9.75e1
variant carriers: 300

GenotypeQuality
all individuals: 1165
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.115770282588879e-4
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Latino
type: Population
allele count: 67
allele frequency: 5.866900175131348e-3
allele num: 11420
num of homozygotes: 1

African
type: Population
allele count: 10
allele frequency: 1.012145748987854e-3
allele num: 9880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 218
allele frequency: 3.477095827485007e-3
allele num: 62696
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.246882793017456e-3
allele num: 802
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

FS
type: SiteQuality
SIO_000300: 6.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 3.468052e6

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.266e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

GenotypeQuality
all individuals: 1181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40267
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.366804046459348e-5
allele num: 10676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 9.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 6.017e1

DP
type: SiteQuality
SIO_000300: 3.461642e6

MQRankSum
type: SiteQuality
SIO_000300: -1.004e0

VQSLOD
type: SiteQuality
SIO_000300: -2.74e0

QD
type: SiteQuality
SIO_000300: 2.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

GenotypeQuality
all individuals: 40504
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5078
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.586445410413428e-5
allele num: 63034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

DP
type: SiteQuality
SIO_000300: 3.497145e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

QD
type: SiteQuality
SIO_000300: 1.346e1

FS
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 59
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variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 7.25e1
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GenotypeQuality
all individuals: 40504
bin: 9.75e1
variant carriers: 717

GenotypeQuality
all individuals: 1360
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GenotypeQuality
all individuals: 1056
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1290
bin: 8.25e1
variant carriers: 2

Other
type: Population
allele count: 3
allele frequency: 3.676470588235294e-3
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.516990291262136e-3
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 2.012882447665056e-3
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 520
allele frequency: 8.249516134149823e-3
allele num: 63034
num of homozygotes: 4

Latino
type: Population
allele count: 27
allele frequency: 2.359727320398532e-3
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 148
allele frequency: 1.374187558031569e-2
allele num: 10770
num of homozygotes: 4

DP
type: SiteQuality
SIO_000300: 3.497145e6

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

FS
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40323
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567889620570712e-5
allele num: 63780
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.709986320109439e-4
allele num: 11696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 3.490013e6

FS
type: SiteQuality
SIO_000300: 1.303e0

QD
type: SiteQuality
SIO_000300: 1.063e1

VQSLOD
type: SiteQuality
SIO_000300: 6.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.616e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

GenotypeQuality
all individuals: 1325
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.812744148254633e-5
allele num: 63998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

DP
type: SiteQuality
SIO_000300: 3.494655e6

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 1.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.301e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40324
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.68764648895278e-5
allele num: 63998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 1.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

DP
type: SiteQuality
SIO_000300: 3.494655e6

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64212
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 3.50073e6

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

FS
type: SiteQuality
SIO_000300: 3.719e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40327
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 318
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7527
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543638665061283e-5
allele num: 64782
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.41e1

FS
type: SiteQuality
SIO_000300: 1.2448e1

VQSLOD
type: SiteQuality
SIO_000300: -1.555e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 3.516563e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.791e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.52e0

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeQuality
all individuals: 2365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535579374097847e-5
allele num: 65122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 3.528084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.051e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.189e1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.071158748195694e-5
allele num: 65122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
type: SiteQuality
SIO_000300: 3.528084e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.189e1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40328
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.602638846271863e-5
allele num: 65180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

FS
type: SiteQuality
SIO_000300: 1.886e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.844e0

DP
type: SiteQuality
SIO_000300: 3.529976e6

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533177971298908e-5
allele num: 65224
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.567e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.26e-1

DP
type: SiteQuality
SIO_000300: 3.530995e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.988e0

QD
type: SiteQuality
SIO_000300: 1.334e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 2409
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40329
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.742790335151988e-5
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65258
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.184e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

FS
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.917e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.531884e6

VQSLOD
type: SiteQuality
SIO_000300: -4.741e-1

GenotypeQuality
all individuals: 1375
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40331
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.654389026667891e-5
allele num: 65322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.321e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 1.178e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 3.535209e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

FS
type: SiteQuality
SIO_000300: 1.182e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.97e0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.115646882549002e-5
allele num: 65406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.284e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 3.537064e6

GenotypeQuality
all individuals: 1275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40333
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.714113065664025e-5
allele num: 14894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.667e0

MQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.304e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 3.540934e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e0

QD
type: SiteQuality
SIO_000300: 1.211e1

GenotypeQuality
all individuals: 1382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40336
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9221
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.67305088024763e-5
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.394e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 3.548221e6

MQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

GenotypeQuality
all individuals: 9221
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

DP
type: SiteQuality
SIO_000300: 3.548221e6

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

QD
type: SiteQuality
SIO_000300: 1.394e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 5.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 9.25e1
variant carriers: 0