4-113567775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567775
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567775
    reference: chr 4
allele count: 9
allele frequency: 1.24608866613131e-4
allele num: 72226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.335A>G
  hgvsp: ENSP00000344950.5:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.335A>G
  hgvsp: ENSP00000421541.1:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*94A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000426646
  ensembl transcript: ENST00000508577
  gene symbol: LARP7
  hgvsc: ENST00000508577.1:c.335A>G
  hgvsp: ENSP00000426646.1:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1100A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.497T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.356A>G
  hgvsp: ENSP00000422626.1:p.Lys119Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.335A>G
  hgvsp: ENSP00000421963.1:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.335A>G
  hgvsp: ENSP00000314311.6:p.Lys112Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*94A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24081
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys119Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

4-113567790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567790
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567790
    reference: chr 4
allele count: 1
allele frequency: 1.222165187846789e-5
allele num: 81822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.350A>G
  hgvsp: ENSP00000314311.6:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.350A>G
  hgvsp: ENSP00000421541.1:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.482T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.350A>G
  hgvsp: ENSP00000421963.1:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000426646
  ensembl transcript: ENST00000508577
  gene symbol: LARP7
  hgvsc: ENST00000508577.1:c.350A>G
  hgvsp: ENSP00000426646.1:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1085A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*109A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.350A>G
  hgvsp: ENSP00000344950.5:p.Glu117Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.371A>G
  hgvsp: ENSP00000422626.1:p.Glu124Gly
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*109A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu124Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

4-113567806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567806
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567806
    reference: chr 4
allele count: 1
allele frequency: 1.147078391337264e-5
allele num: 87178
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.387G>A
  hgvsp: ENST00000509061.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.366G>A
  hgvsp: ENST00000507443.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.366G>A
  hgvsp: ENST00000324052.6:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.366G>A
  hgvsp: ENST00000344442.5:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1069G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*125G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.366G>A
  hgvsp: ENST00000505034.1:c.366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*125G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.466C>T
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26745
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu129Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

4-113567813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567813
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567813
    reference: chr 4
allele count: 1
allele frequency: 1.13832984245515e-5
allele num: 87848
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.394C>T
  hgvsp: ENSP00000422626.1:p.Arg132Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.373C>T
  hgvsp: ENSP00000421963.1:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.373C>T
  hgvsp: ENSP00000421541.1:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.373C>T
  hgvsp: ENSP00000314311.6:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.373C>T
  hgvsp: ENSP00000344950.5:p.Arg125Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*132C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.459G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1062C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg132Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

4-113567814-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567814
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567814
    reference: chr 4
allele count: 2
allele frequency: 2.275727094806791e-5
allele num: 87884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.374G>A
  hgvsp: ENSP00000314311.6:p.Arg125His
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1061G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.374G>A
  hgvsp: ENSP00000421541.1:p.Arg125His
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.395G>A
  hgvsp: ENSP00000422626.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.374G>A
  hgvsp: ENSP00000344950.5:p.Arg125His
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.458C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.374G>A
  hgvsp: ENSP00000421963.1:p.Arg125His
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22163
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg132His
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

4-113567814-GCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567814
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567812
    reference: chr 4
allele count: 2
allele frequency: 2.275727094806791e-5
allele num: 87884
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.456_457delTG
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.377_378delCA
  hgvsp: ENSP00000421963.1:p.Thr126SerfsTer?
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.377_378delCA
  hgvsp: ENSP00000314311.6:p.Thr126SerfsTer11
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*136_*137delCA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.398_399delCA
  hgvsp: ENSP00000422626.1:p.Thr133SerfsTer11
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1058_31-1057delCA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*136_*137delCA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.377_378delCA
  hgvsp: ENSP00000344950.5:p.Thr126SerfsTer11
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.377_378delCA
  hgvsp: ENSP00000421541.1:p.Thr126SerfsTer11
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22163
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr133SerfsTer11
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: GCA
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

4-113567817-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567817
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567817
    reference: chr 4
allele count: 1
allele frequency: 1.1302500113025e-5
allele num: 88476
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.455G>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*136C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.377C>G
  hgvsp: ENSP00000421963.1:p.Thr126Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.377C>G
  hgvsp: ENSP00000314311.6:p.Thr126Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1058C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.398C>G
  hgvsp: ENSP00000422626.1:p.Thr133Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.377C>G
  hgvsp: ENSP00000421541.1:p.Thr126Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*136C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.377C>G
  hgvsp: ENSP00000344950.5:p.Thr126Arg
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6152
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr133Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-113567821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567821
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567821
    reference: chr 4
allele count: 1
allele frequency: 1.125239113311579e-5
allele num: 88870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.381G>A
  hgvsp: ENST00000344442.5:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.451C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.381G>A
  hgvsp: ENST00000324052.6:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.381G>A
  hgvsp: ENST00000507443.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.402G>A
  hgvsp: ENST00000509061.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.381G>A
  hgvsp: ENST00000505034.1:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1054G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21658
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val134Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

4-113567823-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567823
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567823
    reference: chr 4
allele count: 1
allele frequency: 1.1212270709064e-5
allele num: 89188
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.449T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.383A>G
  hgvsp: ENSP00000344950.5:p.Tyr128Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.383A>G
  hgvsp: ENSP00000314311.6:p.Tyr128Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*142A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421963
  ensembl transcript: ENST00000507443
  gene symbol: LARP7
  hgvsc: ENST00000507443.1:c.383A>G
  hgvsp: ENSP00000421963.1:p.Tyr128Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.383A>G
  hgvsp: ENSP00000421541.1:p.Tyr128Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.404A>G
  hgvsp: ENSP00000422626.1:p.Tyr135Cys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1052A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*142A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr135Cys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

4-113567832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567832
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567832
    reference: chr 4
allele count: 1
allele frequency: 1.111012354457382e-5
allele num: 90008
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.440C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+5G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1043G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3322
  bin: 2.75e1
  variant carriers: 0
hgvs: c.408+5G>A
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-113567833-CTTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567830
    reference: chr 4
allele count: 2
allele frequency: 2.22000222000222e-5
allele num: 90090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+7_387+9delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+7_408+9delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1041_31-1039delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+7_*146+9delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+7_*146+9delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+7_387+9delTTA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.436_438delTAA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+7_387+9delTTA
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17966
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 4.25e1
  variant carriers: 0
hgvs: c.408+7_408+9delTTA
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: CTTA
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-113567833-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567833
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567834
    reference: chr 4
allele count: 1
allele frequency: 1.11000111000111e-5
allele num: 90090
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1040dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+8dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+8dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.438dupA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+8dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+8dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+8dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+8dupT
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17966
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

4-113567835-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567835
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567835
    reference: chr 4
allele count: 2
allele frequency: 2.211655424084928e-5
allele num: 90430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1040T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+8T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.437A>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+8T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+8T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+8T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+8T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+8T>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18010
  bin: 2.25e1
  variant carriers: 0
hgvs: c.408+8T>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

4-113567837-A-ACTGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567837
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567841
    reference: chr 4
allele count: 2
allele frequency: 2.204342554833021e-5
allele num: 90730
alternate allele: ACTGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+10_387+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1038_31-1037insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+10_*146+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+10_387+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.434_435insCCAG
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+10_408+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+10_*146+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+10_387+11insCTGG
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17974
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4738
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

4-113567843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567843
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567843
    reference: chr 4
allele count: 6
allele frequency: 6.596016006332175e-5
allele num: 90964
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+16C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+16C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+16C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+16C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.429G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1032C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+16C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+16C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9050
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17603
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

4-113567844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567844
    reference: chr 4
allele count: 7
allele frequency: 7.645426942484545e-5
allele num: 91558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+17G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.428C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+17G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+17G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+17G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1031G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+17G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+17G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13481
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17634
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5055
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-113567849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567849
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567849
    reference: chr 4
allele count: 3
allele frequency: 3.245348334054522e-5
allele num: 92440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.423G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+22C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1026C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17050
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5227
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

4-113567851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567851
    reference: chr 4
allele count: 1
allele frequency: 1.077702338614075e-5
allele num: 92790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+24C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+24C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+24C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+24C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1024C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.421G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+24C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+24C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5396
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

4-113567854-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567854
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567854
    reference: chr 4
allele count: 1
allele frequency: 1.070205479452055e-5
allele num: 93440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.418A>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+27T>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1021T>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3974
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

4-113567861-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567861
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567861
    reference: chr 4
allele count: 1
allele frequency: 1.062902574350035e-5
allele num: 94082
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.411G>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+34C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1014C>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

4-113567864-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567864
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567864
    reference: chr 4
allele count: 9
allele frequency: 9.573042312847023e-5
allele num: 94014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+37G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+37G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.408C>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1011G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+37G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+37G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+37G>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+37G>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12034
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10761
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-113567866-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567866
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567866
    reference: chr 4
allele count: 1
allele frequency: 1.054185114906178e-5
allele num: 94860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+39A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+39A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1009A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+39A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.406T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+39A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+39A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+39A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15381
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15455
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

4-113567869-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567869
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567869
    reference: chr 4
allele count: 4
allele frequency: 4.208754208754209e-5
allele num: 95040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+42G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+42G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.403C>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1006G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+42G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+42G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+42G>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+42G>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17254
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10343
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4794
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

4-113567874-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567874
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567874
    reference: chr 4
allele count: 1
allele frequency: 1.033997849284474e-5
allele num: 96712
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.398T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*146+47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-1001A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.387+47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*146+47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.408+47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.387+47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.387+47A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

4-113567896-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567896
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567896
    reference: chr 4
allele count: 4
allele frequency: 3.438257491103509e-5
allele num: 116338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.279T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-979A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-51A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-51A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-51A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.376T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-51A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.328T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-51A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-51A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12308
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6003
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

4-113567900-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567900
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567900
    reference: chr 4
allele count: 1
allele frequency: 8.593132368611007e-6
allele num: 116372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.275T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.324T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-975A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.372T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-47A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-47A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

4-113567901-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567901
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567901
    reference: chr 4
allele count: 2
allele frequency: 1.719306088062858e-5
allele num: 116326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.323G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.371G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-46C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.274G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-974C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7706
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/4-113567902-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567902
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567902
    reference: chr 4
allele count: 17
allele frequency: 1.457301078402798e-4
allele num: 116654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-973A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-45A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.370T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-45A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-45A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-45A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-45A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.273T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.322T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-45A>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

4-113567902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567902
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567902
    reference: chr 4
allele count: 2
allele frequency: 1.714471856944468e-5
allele num: 116654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-973A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-45A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-45A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-45A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.370T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-45A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-45A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.273T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.322T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-45A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14908
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-113567907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567907
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567907
    reference: chr 4
allele count: 3
allele frequency: 2.574665293511844e-5
allele num: 116520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-40G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-40G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-40G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.365C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-40G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.317C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-968G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-40G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.268C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-40G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8054
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

4-113567914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567914
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567914
    reference: chr 4
allele count: 1
allele frequency: 8.558712769599453e-6
allele num: 116840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-961A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.358T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.261T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-33A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.310T>C
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

4-113567921-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567921
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567922
    reference: chr 4
allele count: 12
allele frequency: 1.023017902813299e-4
allele num: 117300
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.350dupA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-953dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.253dupA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-25dupT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.302dupA
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

4-113567922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567922
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567922
    reference: chr 4
allele count: 1
allele frequency: 8.516581784734879e-6
allele num: 117418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.253A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-25T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.350A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.302A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-25T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-25T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-953T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-25T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-25T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-25T>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

4-113567923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567923
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567923
    reference: chr 4
allele count: 1
allele frequency: 8.512376996152406e-6
allele num: 117476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-24A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.349T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-952A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.301T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-24A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-24A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-24A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.252T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-24A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-24A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

4-113567937-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567937
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567937
    reference: chr 4
allele count: 1
allele frequency: 8.410994852471151e-6
allele num: 118892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-938T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-10T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-10T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.335A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.238A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-10T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.287A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-10T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-10T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-10T>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum

4-113567940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567940
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567940
    reference: chr 4
allele count: 1
allele frequency: 8.398844319021702e-6
allele num: 119064
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.332T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.284T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-7A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.235T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-935A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7316
  bin: 6.75e1
  variant carriers: 0
hgvs: c.409-7A>G
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

4-113567940-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567940
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567940
    reference: chr 4
allele count: 1
allele frequency: 8.398844319021702e-6
allele num: 119064
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.235T>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.284T>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-7A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-935A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.332T>A
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22759
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: c.409-7A>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-113567944-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567944
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567944
    reference: chr 4
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.280A>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.328A>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-931T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-3T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.231A>T
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: c.409-3T>A
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-113567946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567946
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567946
    reference: chr 4
allele count: 1
allele frequency: 8.367780697203488e-6
allele num: 119506
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.388-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.388-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.278C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.229C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.409-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*147-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.388-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-929G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*147-1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.326C>T
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7419
  bin: 6.75e1
  variant carriers: 0
hgvs: c.409-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/4-113567963-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567963
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567963
    reference: chr 4
allele count: 1
allele frequency: 8.329446258412741e-6
allele num: 120056
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.425A>C
  hgvsp: ENSP00000422626.1:p.Asn142Thr
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*163A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.404A>C
  hgvsp: ENSP00000314311.6:p.Asn135Thr
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.404A>C
  hgvsp: ENSP00000421541.1:p.Asn135Thr
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.309T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.212T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.404A>C
  hgvsp: ENSP00000344950.5:p.Asn135Thr
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.261T>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*163A>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-912A>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3410
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn142Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-113567964-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567964
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567964
    reference: chr 4
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.405T>C
  hgvsp: ENST00000505034.1:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.260A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.405T>C
  hgvsp: ENST00000344442.5:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.426T>C
  hgvsp: ENST00000509061.1:c.426T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.211A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.405T>C
  hgvsp: ENST00000324052.6:c.405T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.308A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-911T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*164T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*164T>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23706
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn142Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-113567965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567965
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567965
    reference: chr 4
allele count: 1
allele frequency: 8.328891257995735e-6
allele num: 120064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.406G>A
  hgvsp: ENSP00000421541.1:p.Val136Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*165G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.210C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-910G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.259C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.406G>A
  hgvsp: ENSP00000344950.5:p.Val136Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.427G>A
  hgvsp: ENSP00000422626.1:p.Val143Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.307C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.406G>A
  hgvsp: ENSP00000314311.6:p.Val136Ile
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26315
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val143Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

4-113567967-T-TACTCTTTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567967
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567975
    reference: chr 4
allele count: 3
allele frequency: 2.497876804715991e-5
allele num: 120102
alternate allele: TACTCTTTC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.409_410insCTCTTTCA
  hgvsp: ENSP00000314311.6:p.Asn137ThrfsTer21
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.430_431insCTCTTTCA
  hgvsp: ENSP00000422626.1:p.Asn144ThrfsTer21
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.409_410insCTCTTTCA
  hgvsp: ENSP00000421541.1:p.Asn137ThrfsTer21
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.256_257insGAAAGAGT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.207_208insGAAAGAGT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.409_410insCTCTTTCA
  hgvsp: ENSP00000344950.5:p.Asn137ThrfsTer21
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.304_305insGAAAGAGT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn144ThrfsTer21
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP

4-113567968-AATCACAGCTGGATTGAAAGAGTATTTGGGAAATG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567968
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567934
    reference: chr 4
allele count: 1
allele frequency: 8.32514693884347e-6
allele num: 120118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsp: ENSP00000421541.1:p.Asn137MetfsTer7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsp: ENSP00000314311.6:p.Asn137MetfsTer7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsp: ENSP00000344950.5:p.Asn137MetfsTer7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsp: ENSP00000422626.1:p.Asn144MetfsTer7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7605
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn144MetfsTer7
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: AATCACAGCTGGATTGAAAGAGTATTTGGGAAATG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

4-113567970-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567970
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567970
    reference: chr 4
allele count: 1
allele frequency: 8.322375538873816e-6
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.411T>A
  hgvsp: ENSP00000314311.6:p.Asn137Lys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.302A>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.411T>A
  hgvsp: ENSP00000421541.1:p.Asn137Lys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-905T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*170T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.432T>A
  hgvsp: ENSP00000422626.1:p.Asn144Lys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*170T>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.411T>A
  hgvsp: ENSP00000344950.5:p.Asn137Lys
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.254A>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.205A>T
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn144Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/4-113567971-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567971
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567970
    reference: chr 4
allele count: 3
allele frequency: 2.496421795426555e-5
allele num: 120172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*172delA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.413delA
  hgvsp: ENSP00000344950.5:p.His138ProfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.434delA
  hgvsp: ENSP00000422626.1:p.His145ProfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.252delT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.300delT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.413delA
  hgvsp: ENSP00000314311.6:p.His138ProfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.203delT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.413delA
  hgvsp: ENSP00000421541.1:p.His138ProfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*172delA
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-903delA
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His145ProfsTer17
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CA
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

4-113567975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567975
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567975
    reference: chr 4
allele count: 1
allele frequency: 8.315178526882972e-6
allele num: 120262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*175G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.297C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*175G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.249C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.416G>A
  hgvsp: ENSP00000344950.5:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.416G>A
  hgvsp: ENSP00000421541.1:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.437G>A
  hgvsp: ENSP00000422626.1:p.Ser146Asn
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.416G>A
  hgvsp: ENSP00000314311.6:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.200C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-900G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7643
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser146Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/4-113567976-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567976
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567976
    reference: chr 4
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.248G>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.417C>A
  hgvsp: ENSP00000314311.6:p.Ser139Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.296G>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*176C>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.417C>A
  hgvsp: ENSP00000344950.5:p.Ser139Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.417C>A
  hgvsp: ENSP00000421541.1:p.Ser139Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*176C>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.438C>A
  hgvsp: ENSP00000422626.1:p.Ser146Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.199G>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-899C>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser146Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

4-113567978-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567978
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567979
    reference: chr 4
allele count: 3
allele frequency: 2.493931433511788e-5
allele num: 120292
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.440_441insT
  hgvsp: ENSP00000422626.1:p.Trp147CysfsTer3
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.419_420insT
  hgvsp: ENSP00000314311.6:p.Trp140CysfsTer3
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*178_*179insT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.293_294insA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.245_246insA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-897_31-896insT
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.419_420insT
  hgvsp: ENSP00000344950.5:p.Trp140CysfsTer3
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.419_420insT
  hgvsp: ENSP00000421541.1:p.Trp140CysfsTer3
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.196_197insA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*178_*179insT
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Trp147CysfsTer3
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

4-113567981-TTGAAAGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567981
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567973
    reference: chr 4
allele count: 3
allele frequency: 2.493102416647276e-5
allele num: 120332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.235_242delCTCTTTCA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.424_431delGAAAGAGT
  hgvsp: ENSP00000421541.1:p.Glu142IlefsTer16
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.445_452delGAAAGAGT
  hgvsp: ENSP00000422626.1:p.Glu149IlefsTer16
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.186_193delCTCTTTCA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.424_431delGAAAGAGT
  hgvsp: ENSP00000314311.6:p.Glu142IlefsTer16
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.424_431delGAAAGAGT
  hgvsp: ENSP00000344950.5:p.Glu142IlefsTer16
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.283_290delCTCTTTCA
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26864
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu149IlefsTer16
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: TTGAAAGAG
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

4-113567985-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567985
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567983
    reference: chr 4
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*188_*189delAG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.429_430delAG
  hgvsp: ENSP00000314311.6:p.Arg143SerfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-887_31-886delAG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*188_*189delAG
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.188_189delCT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.429_430delAG
  hgvsp: ENSP00000421541.1:p.Arg143SerfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.285_286delCT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.237_238delCT
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.450_451delAG
  hgvsp: ENSP00000422626.1:p.Arg150SerfsTer17
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.429_430delAG
  hgvsp: ENSP00000344950.5:p.Arg143SerfsTer17
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg150SerfsTer17
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: AAG
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

4-113567997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113567997
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113567997
    reference: chr 4
allele count: 1
allele frequency: 8.303992559622666e-6
allele num: 120424
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.275C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.438G>A
  hgvsp: ENST00000324052.6:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.459G>A
  hgvsp: ENST00000509061.1:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.438G>A
  hgvsp: ENST00000344442.5:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*197G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.178C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.438G>A
  hgvsp: ENST00000505034.1:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.227C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-878G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*197G>A
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly153Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-113568006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568006
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568006
    reference: chr 4
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.447C>T
  hgvsp: ENST00000344442.5:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.266G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.218G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.447C>T
  hgvsp: ENST00000324052.6:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*206C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.447C>T
  hgvsp: ENST00000505034.1:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-869C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.468C>T
  hgvsp: ENST00000509061.1:c.468C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*206C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.169G>A
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3427
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly156Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

4-113568009-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568009
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568009
    reference: chr 4
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*209T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-866T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.471T>C
  hgvsp: ENST00000509061.1:c.471T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.450T>C
  hgvsp: ENST00000344442.5:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.450T>C
  hgvsp: ENST00000324052.6:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*209T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.450T>C
  hgvsp: ENST00000505034.1:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.215A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.263A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.166A>G
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn157Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

4-113568010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568010
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568010
    reference: chr 4
allele count: 22
allele frequency: 1.826544675622271e-4
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.451G>A
  hgvsp: ENSP00000314311.6:p.Val151Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.451G>A
  hgvsp: ENSP00000344950.5:p.Val151Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-865G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.262C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*210G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.165C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.214C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*210G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.472G>A
  hgvsp: ENSP00000422626.1:p.Val158Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.451G>A
  hgvsp: ENSP00000421541.1:p.Val151Ile
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7692
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val158Ile
num of homozygotes: 2
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

4-113568012-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568012
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568012
    reference: chr 4
allele count: 2
allele frequency: 1.660412446451699e-5
allele num: 120452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.453T>C
  hgvsp: ENST00000324052.6:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*212T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.453T>C
  hgvsp: ENST00000344442.5:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.474T>C
  hgvsp: ENST00000509061.1:c.474T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.163A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.212A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-863T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.453T>C
  hgvsp: ENST00000505034.1:c.453T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.260A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*212T>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3431
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val158Val
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

4-113568013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568013
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568013
    reference: chr 4
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*213G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.259C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*213G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.454G>A
  hgvsp: ENSP00000344950.5:p.Val152Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-862G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.454G>A
  hgvsp: ENSP00000421541.1:p.Val152Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.475G>A
  hgvsp: ENSP00000422626.1:p.Val159Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.162C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.211C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.454G>A
  hgvsp: ENSP00000314311.6:p.Val152Ile
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val159Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

4-113568019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568019
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568019
    reference: chr 4
allele count: 1
allele frequency: 8.302062232258493e-6
allele num: 120452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.460A>G
  hgvsp: ENSP00000421541.1:p.Ile154Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.460A>G
  hgvsp: ENSP00000314311.6:p.Ile154Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.253T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.205T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.156T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*219A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.481A>G
  hgvsp: ENSP00000422626.1:p.Ile161Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*219A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.460A>G
  hgvsp: ENSP00000344950.5:p.Ile154Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-856A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile161Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

4-113568027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568027
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568027
    reference: chr 4
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.468A>G
  hgvsp: ENSP00000344950.5:p.Ile156Met
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.468A>G
  hgvsp: ENSP00000314311.6:p.Ile156Met
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-848A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.489A>G
  hgvsp: ENSP00000422626.1:p.Ile163Met
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.245T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.468A>G
  hgvsp: ENSP00000421541.1:p.Ile156Met
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.148T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.197T>C
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile163Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

4-113568027-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568027
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568027
    reference: chr 4
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.468A>T
  hgvsp: ENST00000344442.5:c.468A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.148T>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*227A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.489A>T
  hgvsp: ENST00000509061.1:c.489A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-848A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.468A>T
  hgvsp: ENST00000505034.1:c.468A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*227A>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.245T>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.468A>T
  hgvsp: ENST00000324052.6:c.468A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.197T>A
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile163Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

4-113568028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568028
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568028
    reference: chr 4
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.469C>T
  hgvsp: ENSP00000421541.1:p.Pro157Ser
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-847C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.147G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.469C>T
  hgvsp: ENSP00000314311.6:p.Pro157Ser
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.469C>T
  hgvsp: ENSP00000344950.5:p.Pro157Ser
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.244G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.196G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.490C>T
  hgvsp: ENSP00000422626.1:p.Pro164Ser
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9588
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26842
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro164Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-113568030-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568030
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568030
    reference: chr 4
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.242T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*230A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.471A>G
  hgvsp: ENST00000344442.5:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.145T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.471A>G
  hgvsp: ENST00000505034.1:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.194T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-845A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.471A>G
  hgvsp: ENST00000324052.6:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*230A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.492A>G
  hgvsp: ENST00000509061.1:c.492A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3635
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro164Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

4-113568040-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568040
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568040
    reference: chr 4
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.135A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.481T>C
  hgvsp: ENSP00000421541.1:p.Ser161Pro
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*240T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-835T>C
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.232A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.481T>C
  hgvsp: ENSP00000314311.6:p.Ser161Pro
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.184A>G
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.481T>C
  hgvsp: ENSP00000344950.5:p.Ser161Pro
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.502T>C
  hgvsp: ENSP00000422626.1:p.Ser168Pro
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*240T>C
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser168Pro
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

4-113568043-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568043
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568043
    reference: chr 4
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.484A>G
  hgvsp: ENSP00000344950.5:p.Thr162Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.132T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.484A>G
  hgvsp: ENSP00000421541.1:p.Thr162Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*243A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.229T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.484A>G
  hgvsp: ENSP00000314311.6:p.Thr162Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-832A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*243A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.181T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.505A>G
  hgvsp: ENSP00000422626.1:p.Thr169Ala
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr169Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-113568044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568044
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568044
    reference: chr 4
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.485C>T
  hgvsp: ENSP00000344950.5:p.Thr162Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.485C>T
  hgvsp: ENSP00000314311.6:p.Thr162Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.485C>T
  hgvsp: ENSP00000421541.1:p.Thr162Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.506C>T
  hgvsp: ENSP00000422626.1:p.Thr169Ile
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.180G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.228G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.131G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*244C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-831C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr169Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

4-113568046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568046
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568046
    reference: chr 4
allele count: 2
allele frequency: 1.660770929865644e-5
allele num: 120426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174720
  ensembl transcript: ENST00000503316
  gene symbol: LARP7
  hgvsc: ENST00000503316.1:n.1G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.487G>A
  hgvsp: ENSP00000421541.1:p.Gly163Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.487G>A
  hgvsp: ENSP00000314311.6:p.Gly163Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.129C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.226C>T
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.508G>A
  hgvsp: ENSP00000422626.1:p.Gly170Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.487G>A
  hgvsp: ENSP00000344950.5:p.Gly163Arg
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-829G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*246G>A
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.178C>T
  variant of: http://identifiers.org/hgnc/31763
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23586
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly170Arg
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS

4-113568052-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568052
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568052
    reference: chr 4
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.493C>G
  hgvsp: ENSP00000344950.5:p.Pro165Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.514C>G
  hgvsp: ENSP00000422626.1:p.Pro172Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.220G>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.172G>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.493C>G
  hgvsp: ENSP00000314311.6:p.Pro165Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*252C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.123G>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000424116
  ensembl transcript: ENST00000505216
  gene symbol: LARP7
  hgvsc: ENST00000505216.1:c.*252C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.493C>G
  hgvsp: ENSP00000421541.1:p.Pro165Ala
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-823C>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174720
  ensembl transcript: ENST00000503316
  gene symbol: LARP7
  hgvsc: ENST00000503316.1:n.7C>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro172Ala
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

4-113568060-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568060
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568060
    reference: chr 4
allele count: 3
allele frequency: 2.491735743118657e-5
allele num: 120398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.522A>G
  hgvsp: ENST00000509061.1:c.522A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.501A>G
  hgvsp: ENST00000324052.6:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.501A>G
  hgvsp: ENST00000344442.5:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*260A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.501A>G
  hgvsp: ENST00000505034.1:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.164T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.212T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.115T>C
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-815A>G
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174720
  ensembl transcript: ENST00000503316
  gene symbol: LARP7
  hgvsc: ENST00000503316.1:n.15A>G
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly174Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

4-113568065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 113568065
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 113568065
    reference: chr 4
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000510655
  gene symbol: MIR302B
  hgvsc: ENST00000510655.1:n.207G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000344950
  ensembl transcript: ENST00000344442
  gene symbol: LARP7
  hgvsc: ENST00000344442.5:c.506C>T
  hgvsp: ENSP00000344950.5:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422626
  ensembl transcript: ENST00000509061
  gene symbol: LARP7
  hgvsc: ENST00000509061.1:c.527C>T
  hgvsp: ENSP00000422626.1:p.Ala176Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422451
  ensembl transcript: ENST00000509622
  gene symbol: LARP7
  hgvsc: ENST00000509622.1:c.*265C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000314311
  ensembl transcript: ENST00000324052
  gene symbol: LARP7
  hgvsc: ENST00000324052.6:c.506C>T
  hgvsp: ENSP00000314311.6:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000509938
  gene symbol: MIR302B
  hgvsc: ENST00000509938.1:n.159G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000421541
  ensembl transcript: ENST00000505034
  gene symbol: LARP7
  hgvsc: ENST00000505034.1:c.506C>T
  hgvsp: ENSP00000421541.1:p.Ala169Val
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000249532
  ensembl transcript: ENST00000505215
  gene symbol: MIR302B
  hgvsc: ENST00000505215.1:n.110G>A
  variant of: http://identifiers.org/hgnc/31763
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174720
  ensembl transcript: ENST00000503316
  gene symbol: LARP7
  hgvsc: ENST00000503316.1:n.20C>T
  variant of: http://identifiers.org/hgnc/24912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174720
  ensembl protein: ENSP00000422013
  ensembl transcript: ENST00000513553
  gene symbol: LARP7
  hgvsc: ENST00000513553.1:c.31-810C>T
  variant of: http://identifiers.org/hgnc/24912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala176Val
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

GenotypeQuality
all individuals: 686
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 591
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23818
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.179558011049724e-4
allele num: 11584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.665689149560117e-4
allele num: 5456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.591210613598673e-5
allele num: 38592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.621e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.88565e5

QD
type: SiteQuality
SIO_000300: 1.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26683
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.264287655103704e-5
allele num: 44164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 3.424e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 1.057348e6

GenotypeQuality
all individuals: 1009
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.422070534698521e-4
allele num: 7032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13000
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

FS
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 1.083274e6

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.792e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.91e-1

QD
type: SiteQuality
SIO_000300: 1.671e1

GenotypeQuality
all individuals: 23223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 978
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2468
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2339
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101193477895445e-5
allele num: 47592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.704e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 2.162e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

DP
type: SiteQuality
SIO_000300: 1.068903e6

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.199916001679967e-5
allele num: 47620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13134
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.068992e6

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 2.625e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
all individuals: 22906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2536
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.099958000839983e-5
allele num: 47620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.613826709304096e-5
allele num: 13134
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 1.068992e6

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

FS
type: SiteQuality
SIO_000300: 2.625e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 2675
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 657
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.085766727849157e-5
allele num: 47944
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.919e1

DP
type: SiteQuality
SIO_000300: 1.063773e6

FS
type: SiteQuality
SIO_000300: 1.808e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
all individuals: 586
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.07546386617409e-5
allele num: 48182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13258
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.335e0

QD
type: SiteQuality
SIO_000300: 7.71e0

DP
type: SiteQuality
SIO_000300: 1.057011e6

VQSLOD
type: SiteQuality
SIO_000300: -3.896e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 489
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variant carriers: 0

GenotypeQuality
all individuals: 21810
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variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.070136214962944e-5
allele num: 48306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.054441e6

QD
type: SiteQuality
SIO_000300: 1.642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
type: SiteQuality
SIO_000300: 2.632e0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.106e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
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variant carriers: 0

GenotypeQuality
all individuals: 18018
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variant carriers: 0

GenotypeQuality
all individuals: 129
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variant carriers: 0

GenotypeQuality
all individuals: 4412
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
all individuals: 3388
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variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
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variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.200768491834774e-4
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 9.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

FS
type: SiteQuality
SIO_000300: 4.242e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.528e0

DP
type: SiteQuality
SIO_000300: 1.046409e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.761e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.509e0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2079
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variant carriers: 0

GenotypeQuality
all individuals: 644
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variant carriers: 0

GenotypeQuality
all individuals: 301
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3526
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variant carriers: 0

GenotypeQuality
all individuals: 1063
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variant carriers: 2

GenotypeQuality
all individuals: 18285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
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variant carriers: 0

GenotypeQuality
all individuals: 4557
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.102900750830838e-5
allele num: 48746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13518
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.67e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

DP
type: SiteQuality
SIO_000300: 1.043008e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4557
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18285
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.101723413198823e-4
allele num: 4758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6756
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

MQ
type: SiteQuality
SIO_000300: 5.67e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

DP
type: SiteQuality
SIO_000300: 1.043008e6

QD
type: SiteQuality
SIO_000300: 1.394e1

GenotypeQuality
all individuals: 682
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 1060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.474926253687316e-4
allele num: 13560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.042993e6

QD
type: SiteQuality
SIO_000300: 1.597e1

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

FS
type: SiteQuality
SIO_000300: 1.2304e1

VQSLOD
type: SiteQuality
SIO_000300: -1.272e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.074481522226297e-5
allele num: 49086
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

FS
type: SiteQuality
SIO_000300: 1.205e0

DP
type: SiteQuality
SIO_000300: 1.042592e6

QD
type: SiteQuality
SIO_000300: 1.108e1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.635e1

GenotypeQuality
all individuals: 1183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 7.095553453169347e-4
allele num: 8456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6712
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 5.201e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.044638e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.344809037116729e-4
allele num: 7436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4886
num of homozygotes: 0

South Asian
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allele count: 6
allele frequency: 4.356665698518733e-4
allele num: 13772
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.483511379470506e-4
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49984
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4978
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 8680
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 7.174630506528914e-5
allele num: 13938
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50158
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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QD
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SIO_000300: 2.97e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.046731e6

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.979962776699798e-5
allele num: 50506
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8744
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14046
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 3.256e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

DP
type: SiteQuality
SIO_000300: 1.048163e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7706
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 6794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50770
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.049203440011279e-5
allele num: 14186
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

South Asian
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allele frequency: 2.817695125387433e-4
allele num: 14196
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 7.892971309049292e-5
allele num: 50678
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East Asian
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 8872
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Other
type: Population
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allele num: 718
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VQSLOD
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ClippingRankSum
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QD
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MQ
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DP
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 51106
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European (Finnish)
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African
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Other
type: Population
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Latino
type: Population
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South Asian
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ClippingRankSum
type: SiteQuality
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MQ
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QD
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VQSLOD
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FS
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele num: 51170
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East Asian
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Latino
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Other
type: Population
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
type: Population
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Other
type: Population
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South Asian
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allele frequency: 6.845564074479737e-5
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European (Non-Finnish)
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European (Finnish)
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African
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allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: -1.094e0

VQSLOD
type: SiteQuality
SIO_000300: -4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.182e0

FS
type: SiteQuality
SIO_000300: 6.557e0

QD
type: SiteQuality
SIO_000300: 1.562e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.096828e6

GenotypeQuality
all individuals: 2941
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63818
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.53045013239188e-4
allele num: 11330
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.672853e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

VQSLOD
type: SiteQuality
SIO_000300: -1.975e0

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

QD
type: SiteQuality
SIO_000300: 2.226e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2967
bin: 7.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565974505935043e-5
allele num: 63858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

DP
type: SiteQuality
SIO_000300: 1.681271e6

QD
type: SiteQuality
SIO_000300: 1.555e1

FS
type: SiteQuality
SIO_000300: 2.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.153e0

GenotypeQuality
all individuals: 280
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 13576
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GenotypeQuality
all individuals: 550
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.760873393203029e-4
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.347e0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.637e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.685288e6

GenotypeQuality
all individuals: 9469
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 4116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1323
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variant carriers: 0

GenotypeQuality
all individuals: 2269
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.689551678859501e-5
allele num: 63972
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.017762427531763e-4
allele num: 16214
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.674e-1

FS
type: SiteQuality
SIO_000300: 4.707e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
SIO_000300: 1.693e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 1.690505e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9469
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.757469244288225e-4
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 1.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

FS
type: SiteQuality
SIO_000300: 4.707e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.674e-1

DP
type: SiteQuality
SIO_000300: 1.690505e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.626692456479691e-4
allele num: 8272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 1.361e0

QD
type: SiteQuality
SIO_000300: 1.246e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.617e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.74e-1

DP
type: SiteQuality
SIO_000300: 1.715478e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64154
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05977108944468e-4
allele num: 9436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.598e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

FS
type: SiteQuality
SIO_000300: 4.63e0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.740887e6

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6981
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GenotypeQuality
all individuals: 9546
bin: 9.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55048375093029e-5
allele num: 64496
num of homozygotes: 0

South Asian
type: Population
allele count: 11
allele frequency: 6.80187979223349e-4
allele num: 16172
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 1.2549e1

QD
type: SiteQuality
SIO_000300: 1.391e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.762946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9541
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 384
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7011
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.529987760097919e-4
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.765927e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.186e0

QD
type: SiteQuality
SIO_000300: 1.62e1

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4441
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.171315724512466e-5
allele num: 16204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64594
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 4.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.768898e6

VQSLOD
type: SiteQuality
SIO_000300: -2.588e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 452
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9570
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525180733916969e-5
allele num: 65566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.723e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.332e1

DP
type: SiteQuality
SIO_000300: 1.798519e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

GenotypeQuality
all individuals: 224
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
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variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 513
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variant carriers: 0

GenotypeQuality
all individuals: 94
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GenotypeQuality
all individuals: 129
bin: 5.75e1
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GenotypeQuality
all individuals: 3346
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variant carriers: 0

GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 1658
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variant carriers: 0

GenotypeQuality
all individuals: 9572
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variant carriers: 1

GenotypeQuality
all individuals: 3612
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variant carriers: 0

GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4560
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65680
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

DP
type: SiteQuality
SIO_000300: 1.802665e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

GenotypeQuality
all individuals: 2448
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3612
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.802665e6

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.54e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518695137138171e-5
allele num: 65846
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.050000000000001e0

FS
type: SiteQuality
SIO_000300: 1.2945e1

VQSLOD
type: SiteQuality
SIO_000300: -1.886e0

QD
type: SiteQuality
SIO_000300: 1.544e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.344e0

DP
type: SiteQuality
SIO_000300: 1.80897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.129704548240775e-5
allele num: 16314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.443e0

VQSLOD
type: SiteQuality
SIO_000300: -3.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.957e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 3636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.527071889901611e-5
allele num: 66268
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
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SIO_000300: -6.75e-1

ReadPosRankSum
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SIO_000300: -1.788e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -3.0e-4

BaseQRankSum
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SIO_000300: -1.347e0

VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -2.318e0

MQ
type: SiteQuality
SIO_000300: 5.761e1

DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.029654036243822e-4
allele num: 9712
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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DP
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SIO_000300: 1.82978e6

ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.338e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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allele num: 11572
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East Asian
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African
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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allele num: 66316
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Other
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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Latino
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African
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European (Finnish)
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InbreedingCoeff
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.506795648374167e-5
allele num: 66366
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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MQ
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.519297399897563e-5
allele num: 66382
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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DP
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.517255917605252e-5
allele num: 66412
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.596e1

ClippingRankSum
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SIO_000300: -9.73e-1

BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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SIO_000300: -3.134e0

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 1.027326895418122e-4
allele num: 9734
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

ClippingRankSum
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SIO_000300: -1.95e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.836496e6

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9738
num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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MQ
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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Other
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African
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European (Non-Finnish)
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East Asian
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Latino
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FS
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BaseQRankSum
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MQ
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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Latino
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European (Finnish)
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East Asian
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South Asian
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allele frequency: 1.332848661092936e-3
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FS
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MQ
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.727712508638562e-4
allele num: 11576
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Other
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66490
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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FS
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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East Asian
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South Asian
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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MQ
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QD
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66486
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African
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Latino
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66476
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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African
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East Asian
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allele num: 8626
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Other
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BaseQRankSum
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FS
type: SiteQuality
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QD
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele num: 66476
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South Asian
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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VQSLOD
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ClippingRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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Latino
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European (Finnish)
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Other
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European (Non-Finnish)
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QD
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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FS
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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MQRankSum
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DP
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MQ
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FS
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66458
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African
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allele frequency: 0.0e0
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East Asian
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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VQSLOD
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SIO_000300: 4.06e-1

MQ
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SIO_000300: 5.961e1

FS
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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SIO_000300: 1.837936e6

BaseQRankSum
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SIO_000300: -1.352e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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African
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East Asian
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Latino
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Other
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQ
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DP
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QD
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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African
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allele count: 1
allele frequency: 1.026904908605463e-4
allele num: 9738
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Latino
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BaseQRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.515624059244988e-5
allele num: 66436
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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SIO_000300: 5.954e1

FS
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SIO_000300: 5.534e0

ClippingRankSum
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SIO_000300: -3.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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BaseQRankSum
type: SiteQuality
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DP
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VQSLOD
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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MQRankSum
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